BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480337
Length=1908
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14170.1 | Symbols: ALDH6B2 | aldehyde dehydrogenase 6B2 | ... 2974 0.0
> AT2G14170.1 | Symbols: ALDH6B2 | aldehyde dehydrogenase 6B2
| chr2:5977356-5981899 REVERSE LENGTH=2195
Length=2195
Score = 2974 bits (1610), Expect = 0.0
Identities = 1832/1935 (95%), Gaps = 32/1935 (2%)
Strand=Plus/Plus
Query 1 TGGTGAAAGTCAAACAAAAGAATCTTGAATCTTTATATATCTAACGGTACATATTTAACC 60
|||||| |||||||||||||||||||||||| ||||| |||||||||||||||| | ||
Sbjct 2 TGGTGAGAGTCAAACAAAAGAATCTTGAATC-TTATAGATCTAACGGTACATATCCACCC 60
Query 61 ACGTGGCAAAATCCAACCA---C-TTCGCAACCCGATCAACATCGAGTCAGCACTCACTC 116
||||||| ||||||||||| | ||||| ||||||||||||||||||||||| ||||||
Sbjct 61 ACGTGGCGAAATCCAACCACTTCATTCGC-ACCCGATCAACATCGAGTCAGCATTCACTC 119
Query 117 ATCACTCAAATCCAAAACC-AAA--A-A-G--------AAGCAGCAGACG---GCACCAA 160
||||||||||||||||||| ||| | | | ||| |||||||| ||||||
Sbjct 120 ATCACTCAAATCCAAAACCAAAAGGAGACGCTTATACAAAGAAGCAGACGACAACACCAA 179
Query 161 ACTCCGATCATCATCAACAACAACAA-ATC-A-AACAACGATGCTGCTACGAGTTTCTGG 217
|||||||||||||||| ||||||||| | | | ||||||||||||||| ||| |||||||
Sbjct 180 ACTCCGATCATCATCATCAACAACAACAACAACAACAACGATGCTGCTTCGAATTTCTGG 239
Query 218 TAACAATCTGAGACCTTTGAGACCTCAATTTCTCGCTCTTCGAAGCTCTTGGTTATCAAC 277
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 TAACAATCTGAGACCTTTGAGACCACAATTTCTCGCTCTTCGAAGCTCTTGGTTATCAAC 299
Query 278 GTCGCCGGAGCAATCTACTCAACCAAAAATGCCTCCGAGAGTACCAAATCTTATTGGAGG 337
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 TTCGCCGGAGCAATCTACTCAACCACAAATGCCTCCGAGAGTACCAAATCTTATTGGAGG 359
Query 338 TTCTTTTGTTGATTCTCAATCATCTTCACATATCGATGTTATAAACCCTGCTACACAAGA 397
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 TTCTTTTGTTGAGTCTCAATCATCTTCGTTTATCGATGTTATAAACCCTGCTACACAAGA 419
Query 398 AGTTGTGTCTAAAGTTCCATTGACTACTAATGAAGAGTTTAAGGCGGCGGTATCCGCTGC 457
||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 420 GGTTGTATCTAAAGTTCCATTGACTACTAATGAAGAGTTTAAAGCTGCGGTATCCGCTGC 479
Query 458 GAAGCAAGCGTTTCCGTTATGGAGAAACACGCCGATTACTACCCGGCAGCGTGTTATGCT 517
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GAAGCAAGCGTTTCCGTTGTGGAGAAACACGCCGATTACTACCCGGCAGCGTGTTATGCT 539
Query 518 AAAGTTTCAAGAGCTTATACGCAAGAATATGGATAAACTTGCTATGAACATCACTACCGA 577
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 AAAGTTTCAAGAGCTTATACGCAAGAATATGGATAAACTTGCTATGAACATCACAACCGA 599
Query 578 GCAAGGAAAGACGTTGAAGGATTCACATGGTGATATCTTCCGTGGGTTAGAGGTTGTGGA 637
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCAAGGGAAGACTTTAAAGGATTCACATGGTGATATCTTCCGTGGGTTAGAGGTTGTGGA 659
Query 638 GCATGCGTGTGGAATGGCAACCTTACAGATGGGTGAATATGTCCCCAATGTGTCGAATGG 697
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 660 GCATGCGTGTGGAATGGCAACCTTACAGATGGGTGAATATCTCCCCAATGTGTCGAACGG 719
Query 698 AGTTGATACATATAGTATTAGAGAGCCATTAGGTGTTTGTGCTGGCATTTGTCCATTCAA 757
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 720 AGTTGATACATATAGTATTAGAGAGCCATTAGGTGTTTGTGCTGGCATTTGTCCTTTTAA 779
Query 758 CTTTCCAGCAATGATTCCTTTATGGATGTTTCCTGTTGCAGTGACATGTGGTAATACCTT 817
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTTTCCAGCCATGATTCCTTTATGGATGTTTCCTGTTGCAGTGACATGTGGTAATACCTT 839
Query 818 TATTCTGAAGCCATCAGAGAAGGATCCTGGTGCTTCTGTATTACTTGCGGAGTTGGCAAT 877
||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||
Sbjct 840 TATTCTGAAGCCATCAGAGAAGGATCCCGGTGCTTCTGTAATACTTGCCGAGTTGGCAAT 899
Query 878 GGAAGCTGGATTACCTGATGGGGTTCTCAATATCGTTCACGGCACCAATGATACTGTGAA 937
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 900 GGAAGCTGGTTTACCTGATGGGGTTCTCAATATCGTTCACGGAACCAATGATACTGTGAA 959
Query 938 TGCTATCTGTGATGATGAAGATATAAGGGCTGTTTCTTTTGTTGGCTCCAACACTGCTGG 997
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 960 TGCTATCTGTGATGATGAAGATATAAGGGCTGTTTCTTTTGTTGGCTCCAACACGGCTGG 1019
Query 998 AATGCATATATATGCAAGAGCAGCAGCTAAAGGAAAACGTATTCAGTCAAATATGGGGGC 1057
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1020 AATGCATATATACGCAAGAGCAGCAGCAAAAGGAAAACGTATTCAGTCAAATATGGGGGC 1079
Query 1058 GAAAAATCATGGACTTGTCTTACCTGATGCCAACGTCGATGCAACTTTAAATGCGCTACT 1117
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1080 GAAAAATCATGGACTTGTCTTGCCTGATGCCAACATCGATGCAACTTTAAATGCGCTACT 1139
Query 1118 TGCTGCTGGGTTTGGTGCCGCTGGCCAGAGATGCATGGCACTGAGTACAGTGGTTTTTGT 1177
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1140 TGCTGCTGGGTTTGGTGCCGCTGGACAGAGATGCATGGCACTGAGTACAGTGGTTTTTGT 1199
Query 1178 TGGGGATTCAAAATCATGGGAGGATAAACTCGTTGAGCGAGCGAAGGCCCTTAAAGTCAC 1237
||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1200 TGGCGATGCAAAATCATGGGAGGATAAACTCGTTGAGCGAGCTAAGGCCCTTAAAGTCAC 1259
Query 1238 ATGTGGGTCAGAACCAGATGCAGACCTGGGACCTGTGATTAGTAAACAGGCGAAAGAACG 1297
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1260 ATGTGGGTCAGAACCAGATGCAGACCTGGGTCCTGTGATTAGTAAACAGGCGAAAGAACG 1319
Query 1298 GATATGCCGATTGATTCAGTCTGGTGTAGACGATGGTGCTAAATTGCTGCTTGACGGAAG 1357
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1320 GATATGCCGGTTGATTCAGTCTGGTGTAGATGATGGTGCTAAATTGCTGCTTGACGGAAG 1379
Query 1358 AGATATTGTGGTTCCAGGATACGAGAAAGGGAATTTTATCGGTCCAACCATTTTATCTGG 1417
||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||
Sbjct 1380 AGATATTGTGGTTCCAGGATATGAGAAAGGGAATTTTATCGGTCCTACCATTCTATCTGG 1439
Query 1418 TGTTACCCCAGACATGGAGTGTTACAAGGAGGAAATATTTGGCCCTGTTCTTGTGTGCAT 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TGTTACCCCAGACATGGAGTGTTACAAGGAGGAAATATTTGGCCCTGTTCTTGTGTGCAT 1499
Query 1478 GGAGGCAAGCAGTTTTGATGAAGCCATATCCATAATAAATAAAAACAAGTATGGGAACGG 1537
| |||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1500 GCAGGCAAACAGTTTTGATGAGGCCATATCTATAATAAATAAAAACAAGTATGGGAACGG 1559
Query 1538 TGCTGCAATATTCACCTCGTCGGGGGCAGCAGCAAGAAAGTTCCAGATGGACATAGAAGC 1597
|||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TGCTGCGATTTTCACGTCGTCCGGGGCAGCAGCAAGAAAGTTCCAGATGGACATAGAAGC 1619
Query 1598 AGGACAGATCGGTATTAATGTTCCAATCCCGGTTCCATTACCGTTCTTCTCCTTCACCGG 1657
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1620 AGGACAGATCGGTATTAATGTTCCAATCCCGGTTCCATTACCGTTCTTTTCCTTCACCGG 1679
Query 1658 GAACAAGGCCTCATTCGCAGGAGATCTTAACTTCTATGGCAAAGCAGGAGTGGACTTTTT 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 GAACAAGGCCTCATTCGCAGGAGATCTTAACTTCTATGGCAAAGCAGGAGTGGACTTTTT 1739
Query 1718 CACTCAAATCAAGACTGTTACACAACAGTGGAAAGATATTCCAACTTCAGTATCTCTCGC 1777
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1740 CACTCAGATCAAAACTGTTACACAACAGTGGAAAGATATTCCAACTTCAGTATCTCTGGC 1799
Query 1778 AATGCCAACATCGCAAAAGCAATAATGAGACCTTAACTTCAAATACTTTT---ACTTTTG 1834
||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1800 AATGCCAACGTCTCAAAAGCAATAATGAGACCTTAACTTCAAATACTTTTTTTACTTTTG 1859
Query 1835 GATTTTCGAATCAGCTTCAAGAAGAACCCTTTGTTTCtttttttCAGCTGC-CTAGTATT 1893
|||| ||||||||||||||||||||||||||||||| ||||| ||||| | ||||||||
Sbjct 1860 GATTATCGAATCAGCTTCAAGAAGAACCCTTTGTTTATTTTT--CAGCT-CTCTAGTATT 1916
Query 1894 TTCTTATGCTTAGTT 1908
|||| ||||||||||
Sbjct 1917 TTCTCATGCTTAGTT 1931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94477425690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5