BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480339

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G14247.1 | Symbols:  | Expressed protein | chr2:6034348-6034...   370    5e-102


> AT2G14247.1 | Symbols:  | Expressed protein | chr2:6034348-6034835 
FORWARD LENGTH=488
Length=488

 Score =  370 bits (200),  Expect = 5e-102
 Identities = 318/370 (86%), Gaps = 27/370 (7%)
 Strand=Plus/Plus

Query  1    AATCTTTGTTTATTTTTTGCATGTCTATCTGTCACACAACAA---TT-GTTTATGTATAT  56
            ||||||| |||||||||||||| ||||||||||||||| |||   ||  |||||||||||
Sbjct  1    AATCTTTCTTTATTTTTTGCATCTCTATCTGTCACACACCAATTCTTATTTTATGTATAT  60

Query  57   ATATTGACGCATACATTCACTCTCCAAATTAATCA-TAAGCTTATCTAGTTCTTGATTGT  115
            |||||||||||||||| |  || | |||||||||| || ||||||||||||||||| |||
Sbjct  61   ATATTGACGCATACAT-C--TC-C-AAATTAATCAATA-GCTTATCTAGTTCTTGACTGT  114

Query  116  TCAAACCATCAATGGCACCATCGGCTGCAATGCTCATACTCTCACATCCTCTAATTAGCC  175
            |||| | ||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct  115  TCAA-CGATCAATGGCACCATCCGCTGCAATGCTCATACTCTCACATCCTCTAGTTAGCC  173

Query  176  ACAAAACGATGAATCAGTCTC---C-T-G---T--T-----AAGTCAACACGTGTCTTTG  220
            ||||| | | |||||||||||   | | |   |  |     ||||| ||||||||||| |
Sbjct  174  ACAAAGCTAAGAATCAGTCTCTGTCATCGCCGTCGTCTGTTAAGTCGACACGTGTCTTCG  233

Query  221  ATTTTCTTTTGCCTTGGAAGGCATCAGACGGTGAGGATCGTTCCGCGGTTGGTCTTGGCC  280
             |||||||| |||||||||||||| ||||  |||||||| ||||||||||| ||| ||||
Sbjct  234  GTTTTCTTTGGCCTTGGAAGGCATTAGACAATGAGGATCATTCCGCGGTTGTTCTCGGCC  293

Query  281  GGCTATTTGGCGATCCGGCTACTATCGAGAAGCGCTTCCAAGAAGCTCTTGAACTTAGCT  340
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct  294  GGCTCTTTGGCGATCCGGCTACTATCGAGAAGCGCTTCCAAGAAGCTCTTGAACAAAGCT  353

Query  341  GCTGGTAATT  350
            | ||||||||
Sbjct  354  GTTGGTAATT  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16387286174


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5