BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480347
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14530.1 | Symbols: TBL13 | TRICHOME BIREFRINGENCE-LIKE 13 |... 2194 0.0
> AT2G14530.1 | Symbols: TBL13 | TRICHOME BIREFRINGENCE-LIKE 13
| chr2:6187421-6190380 FORWARD LENGTH=1545
Length=1545
Score = 2194 bits (1188), Expect = 0.0
Identities = 1396/1495 (93%), Gaps = 20/1495 (1%)
Strand=Plus/Plus
Query 1 CCAAAATCTCCGCCATGGCTAAGAGCTTCT--GAGAG----AGCCATGGCTACGATTTCA 54
|||||||||||||||||||| ||||||||| ||||| |||||||||||| | ||||
Sbjct 19 CCAAAATCTCCGCCATGGCTGAGAGCTTCTGAGAGAGACACAGCCATGGCTACAACTTCA 78
Query 55 CCCAACAAActctcaatcttccctctactctcccttctctgtttcatctccattttcttc 114
| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 79 CACAACAAACCCTCACTCTTCCCTCTACTCTCCCTTCTCTGTTTCATCTCCATTTTCCTC 138
Query 115 ctcctctctctatccaaacgcgcttctctctcctctccCAACACTCACCGCTCCGCCACC 174
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 139 CTCCTCTCTCTATCCAAACGCGCTTCCCTCTCCTCTCCCAAAACTCACCGCTCCGCCACC 198
Query 175 GTCTTCCCTCCAAAATCCGACGGTTCCCTCTCACCTCTCTCCGCCACTTGCGACTTCTCC 234
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 GTCTTCCCTCCAAAACCCGACGGTTCCCTCTCACCTCTCTCCGCCACTTGCGACTTCTCC 258
Query 235 GACGGCTCATGGATCTACGACCCCAACCCCAGATCCACCAGGTACACTAGTAATTGTAAA 294
|| ||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 259 GAAGGCTCCTGGATCTACGACCCCAACCCCAGATCCACCAGGTACACCAGTAGTTGTAAA 318
Query 295 GAGATCTTCAAAGGATGGAATTGCATTCGTAACAACAAAACCAATGGTCTCGAGATCTCT 354
|| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||
Sbjct 319 GAAATCTTCAAAGGATGGAATTGTATTCGTAACAACAAAACCAATGGTTTCGAGATATCT 378
Query 355 AAATGGCGATGGAAGCCTAAGGACTGTGATCTTCCTTCGTTTGATCCACTCAAATTTCTT 414
|| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 379 AATTGGCGATGGAAACCTAAACACTGTGATCTTCCTTCGTTTGATCCACTCAAATTTCTT 438
Query 415 CAGACTCATCGAAATACCAACATCGGATTTGTGGGTGATTCATTGAATAGGAACATGTTT 474
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 CAGTCTCATCGCAATACCAACATCGGATTTGTGGGTGATTCATTGAATAGGAACATGTTT 498
Query 475 GTATCTTTATTCTGTATGTTAAAGAGTGTGACGGGTGAACTGAAGAAGTGGCGACCAGCG 534
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 499 GTATCTTTATTCTGTATGTTAAAGAGTGTGACGGGTGAATTGAAGAAGTGGCGACCTGCC 558
Query 535 GGTGCAGATCGCGGATTTACGTTTTTGCAGTATAATCTGACTATAGCGTATCATCGAACA 594
||||||||||||||||| ||||||| |||||||||| ||||||| |||||||||||||||
Sbjct 559 GGTGCAGATCGCGGATTCACGTTTTCGCAGTATAATTTGACTATCGCGTATCATCGAACA 618
Query 595 AATCTCTTGGCTCGTTATGGTAGGTGGTCAGCTAATGCCAATGGTGGTGAGTTAGAATCT 654
||||| ||||||||||||||||| |||||||| ||||| || ||||||||||||||||||
Sbjct 619 AATCTATTGGCTCGTTATGGTAGATGGTCAGCCAATGCTAAGGGTGGTGAGTTAGAATCT 678
Query 655 CTTGGATTTAAAGAGGGCTATAGAGTTGATGTCGATATTCCAGACAGCTCATGGGAAAAG 714
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||
Sbjct 679 CTTGGATTTAAAGAGGGCTATAGAGTTGATGTTGATATTCCAGACAGCTCGTGGGCGAAG 738
Query 715 GCTTCGAGTTTCCATGACATTCTCATTTTAAACACTGGGCATTGGTGGTGGGCGCCATCA 774
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 739 GCTTCGAGTTTCCATGACATTCTCATTTTGAACACTGGGCATTGGTGGTGGGCGCCATCA 798
Query 775 AAATTTGACCCTCTAAAATCTCCTATGCTATTCTTTGAAGGTGGCCGGCCAATACTTCCA 834
|||||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 799 AAATTTGACCCTGTAAAATCTCCTATGCTTTTCTTTGAAGGCGGTCGGCCAATACTTCCA 858
Query 835 CCAATACCTCCTGCTGCTGGCCTGGATCGGGTTCTAAACAATATGGTAAATTTTGTGGAG 894
|| |||||||||||| ||||||| || |||||||||||||||||||||||||||||||||
Sbjct 859 CCTATACCTCCTGCTACTGGCCTAGACCGGGTTCTAAACAATATGGTAAATTTTGTGGAG 918
Query 895 AAAACAAAGCGACCTGGAGGGATCATATTCTTCCGAACACAATCACCTAGGCACTTTGAA 954
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 919 AAAACAAAGCGACCTGGAGGGATCATATTCTTCCGGACACAATCACCTAGGCACTTTGAA 978
Query 955 GGAGGTGACTGGAACCAAGGTGGTACTTGTCAAAGACTGCAACCTTTGTTACCTGGACAA 1014
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 979 GGAGGTGACTGGGACCAAGGTGGTACTTGTCAACGACTGCAACCTTTGTTACCTGGAAAA 1038
Query 1015 GTTGAAGAATTGTTCTCAGTGGGGAACAACGGAACAAATGTAGAGGTTCGTCTGGTGAAT 1074
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1039 GTTGAGGAATTTTTCTCAGTGGGGAACAACGGAACAAATGTAGAGGTTCGTCTCGTGAAT 1098
Query 1075 CAACACCTCTATAACTCCCTCAAGAGTAGAAGCGCCTTCCACGTTTTGGACATAACTCGA 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 CAACACCTCTATAACTCCCTCAAGAGTAGAAGCGCCTTCCACGTTTTGGACATAACTCGA 1158
Query 1135 ATGAGCGAGTACAGAGCTGACGCTCATCCAGCAGCAGCTGGTGGAAAGAATCACGATGAC 1194
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1159 ATGAGCGAGTACAGAGCCGACGCTCATCCGGCAGCAGCTGGTGGAAAGAATCACGATGAC 1218
Query 1195 TGCATGCATTGGTGCCTTCCGGGCATCACCGACACTTGGAATGATTTATTCATCGCAACT 1254
||||||||||||||||| |||||| | |||||||||||||||||||||||| | ||||||
Sbjct 1219 TGCATGCATTGGTGCCTCCCGGGCCTTACCGACACTTGGAATGATTTATTCGTTGCAACT 1278
Query 1255 CTCCATACGATCAAAGGATAAGTAACCTGAAGGAAGAATCACACCCGTCTTTATAATTGT 1314
|| ||||||||||||| | ||||||||||| || ||||||||||||||| ||| ||
Sbjct 1279 CTTCATACGATCAAAGCTTT-GTAACCTGAAG-AA---TCACACCCGTCTTTAGAATGGT 1333
Query 1315 TTTGATTCGTTGGGTCTAGCGTCA--GTCAtttt-tttctttttGTACTCTTGTAAATTT 1371
| | || ||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1334 T---ACTC-TTGGGTCTAGCGTCATAGTCATTTTATTTCTTTTTGTACTCTTGTAAATTT 1389
Query 1372 TGATGTTATCTTCTGCG-TAttttttaatttagttattttttGGTCTACAGTATGCAAAA 1430
||||||||||||||||| | |||||| |||||||||||||||| ||||||||| |||||
Sbjct 1390 TGATGTTATCTTCTGCGATTTTTTTTTGTTTAGTTATTTTTTGGCCTACAGTATTCAAAA 1449
Query 1431 GTGTTTTAAATATTATATACACTTTTCATTTTATCTTTTT-GGTCAAACACTTTT 1484
||||||| ||||||| || ||||||||||||||| ||||| ||||||||||||||
Sbjct 1450 GTGTTTTTAATATTACATGCACTTTTCATTTTATTTTTTTTGGTCAAACACTTTT 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74447408235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5