BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480350
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14620.1 | Symbols: XTH10 | xyloglucan endotransglucosylase/... 1555 0.0
> AT2G14620.1 | Symbols: XTH10 | xyloglucan endotransglucosylase/hydrolase
10 | chr2:6244781-6246233 FORWARD LENGTH=1231
Length=1231
Score = 1555 bits (842), Expect = 0.0
Identities = 963/1022 (94%), Gaps = 6/1022 (1%)
Strand=Plus/Plus
Query 1 ATAGGACACAATTTACTTTAAACACTTTTCATGCAATACAATATGTATATATACTGATCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATAGGACACAATTTACTTTAAACACTTTTCATGCAATACAATATGTATATATACTAATCA 60
Query 61 ATGATCGTCATATATGTCCAACGTACTCAACCCTCAAACATCTTAAATAATGACTATAAT 120
|||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct 61 ATGATCGTTATATATGTCCATCGTACTCAA-CCTCAAACATCTTAAATAATGACTCTAAT 119
Query 121 AAATCGCTCAAAACCATTTGTACTTCTCATAGGATTCT---TTAGCTCAAGTTTGCTATT 177
|||||||||||||||||||||||||||| |||| |||| ||| |||||||||||||||
Sbjct 120 AAATCGCTCAAAACCATTTGTACTTCTCGTAGGCTTCTCAATTATCTCAAGTTTGCTATT 179
Query 178 ATGGGTCTCACAAGCTTCCGTTGTTTCATCAGGAGATTTTAACAAAGACTTCTTCGTGAC 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 ATGGGTCTCACAAGCTTCCGTTGTTTCATCAGGAGATTTTAACAAAGACTTCTTTGTGAC 239
Query 238 ATGGTCTCCTACCCACGTTAACACCTCCAATGATGGTCGATCAAGAACCCTTAAGCTCGA 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 ATGGTCTCCTACCCACGTTAACACCTCCAATGATGGTCGATCAAGAACCCTTAAACTCGA 299
Query 298 TCAAGAATCTGGAGCTTCTTTTTCTTCCATACATAGGTTCTTGTTTGGGCAAATAGATAT 357
|||||||||||||||||||||||||||||| || | ||||||||| || |||||||||||
Sbjct 300 TCAAGAATCTGGAGCTTCTTTTTCTTCCATTCAGACGTTCTTGTTCGGCCAAATAGATAT 359
Query 358 GAAGATCAAACTTATACCG-GGAAGTTCTCAAGGAACCGTGGTTGCTTATTATATGTCTT 416
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 360 GAAGATCAAACTTAT-CCGTGGAAGTTCTCAAGGAACCGTGGTTGCTTATTATATGTCCT 418
Query 417 CAAATCAGCCAAACCGGGATGAGATTGACTTTGAATTCTTGGGAAACGTTAACGGACAGC 476
|| ||||||| ||||||||||||||||||||||| ||| | ||||||||||| || ||||
Sbjct 419 CAGATCAGCCTAACCGGGATGAGATTGACTTTGAGTTCCTCGGAAACGTTAATGGGCAGC 478
Query 477 CTTACATTCTCCAAACAAATGTCTATGCCGATGGAATTGATAACCGCGAAGAAAGGATCC 536
||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 479 CTTACATTCTCCAGACAAATGTCTATGCCGAGGGACTTGATAACCGCGAAGAAAGGATCC 538
Query 537 ATCTCTGGTTCGACCCAACCAAGGACTTTCACACTTACTCTATCTTGTGGAACATTCACC 596
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATCTCTGGTTCGACCCAGCCAAGGACTTTCACACTTACTCTATCTTGTGGAACATTCACC 598
Query 597 AAATTGTATTTATGGTGGATCAGATTCCGATAAGATTGTATAGAAACCACGCGGAGAAAG 656
|||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct 599 AAATTGTATTTATGGTGGATCAGATTCCGATAAGGTTGTATAGAAACCATGGGGAGAAAG 658
Query 657 GCGTAGCCTACCCAAGGCTGGAACCTATGAGTGTACAGACGAGCCTATGGAACGGTGAGA 716
||||||||||||||||| || ||||||||||||||||| |||| ||||||||||||||||
Sbjct 659 GCGTAGCCTACCCAAGGTTGCAACCTATGAGTGTACAGGCGAGTCTATGGAACGGTGAGA 718
Query 717 GCTGGGCTACACGCGGTGGGCGTGACAAGATTGACTGGGCAAAGGGTCCATTTGTGGCTT 776
|||||||||| |||||||| | |||||||||||| ||| |||||||||||||||||||||
Sbjct 719 GCTGGGCTACGCGCGGTGGACATGACAAGATTGATTGGTCAAAGGGTCCATTTGTGGCTT 778
Query 777 CCTTTGGGGATTACAAGATAGATGGTTGTGTTTGGAAAGGCAATCCAATTTTTTGTAATG 836
|||||||||||||||||||||| | |||| |||||| ||||||| ||| |||||||||||
Sbjct 779 CCTTTGGGGATTACAAGATAGACGCTTGTATTTGGATAGGCAATACAAGTTTTTGTAATG 838
Query 837 GAGAGAGCAATGAAAACTGGTGGAACAAGAATGAGTTCAGTTCTTTGACAAGAGTGCAAA 896
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GAGAGAGCACTGAAAACTGGTGGAACAAGAATGAGTTCAGTTCTTTGACAAGAGTGCAAA 898
Query 897 AGAGATGGTTTAAATGGGTGAGGAAGTATCACTTAATTTATGATTATTGCCAAGATAATG 956
|||||||||||||||||||||| || |||||||| ||||||||||||||||||||| |||
Sbjct 899 AGAGATGGTTTAAATGGGTGAGAAAATATCACTTGATTTATGATTATTGCCAAGATTATG 958
Query 957 GAAGGTTCAATAACAAGCTGCCCAAGGAATGTTCTCTTCCAAAATATTGAATTTGCTCCA 1016
||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |
Sbjct 959 GAAGGTTCAATAACAAGCTACCGAAGGAATGTTCTCTTCCTAAATATTGAATTTGCTCAA 1018
Query 1017 AT 1018
||
Sbjct 1019 AT 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5