BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480358
Length=1784
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14690.1 | Symbols: | Glycosyl hydrolase superfamily protei... 2597 0.0
> AT2G14690.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr2:6283801-6286055 REVERSE LENGTH=1866
Length=1866
Score = 2597 bits (1406), Expect = 0.0
Identities = 1665/1791 (93%), Gaps = 14/1791 (1%)
Strand=Plus/Plus
Query 1 TTGTCACAAGTAAAGATGAAGAGATTCAACAATGGCTTTTTCCAGTTGGTGTTTTTTCTC 60
|||||||||| ||||||||| ||||||||| ||||||||||||| |||||| |||| |||
Sbjct 29 TTGTCACAAGAAAAGATGAAAAGATTCAACTATGGCTTTTTCCACTTGGTGCTTTTCCTC 88
Query 61 ATCTCTCTTCCTCTTCTTGGTTCAGGGCTTTGCATGGATCCTTTCTCCTACGACCAGTCT 120
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 89 ATCTCTCTTCTTCTTCTTGGTTCAGGAATTTGCATGGATCCTTTCTCCTACGACCAGTCT 148
Query 121 TTACAATCAGAGTGCCTCATGGAGCCTCCACAAACAACTGGCAATACCGTAGGACAGGGA 180
|| |||||||||||||||||||||||||||||||||||| |||||||| ||| | |||
Sbjct 149 CTAAAATCAGAGTGCCTCATGGAGCCTCCACAAACAACTGCCAATACCGGAGGTGAAGGA 208
Query 181 -TCCAAAGAATTCAAGATAAACGAAAGTGGTGGAATCAGAAATGTAGTAGAGAGAGTTGA 239
| ||||||||| ||||| ||||||| ||||||||||||||||||||||||| |||||||
Sbjct 209 GT-CAAAGAATTGAAGATCAACGAAAATGGTGGAATCAGAAATGTAGTAGAGGGAGTTGA 267
Query 240 TCTTCAGGAAGGAAACATATATAGCGTTTCTGCTTGGGTGAAGTTGAGAAATGAAAGTCA 299
||||| ||||||||||||||| | | ||||||||||||||||||||||||||| |||||
Sbjct 268 TCTTCGGGAAGGAAACATATACATCACTTCTGCTTGGGTGAAGTTGAGAAATGAGAGTCA 327
Query 300 GAGGAAAGTAGGAATGACTTTTAGGGGGAAGAATGGGATAAACGTTTTCGGAGGTGAAGT 359
||| |||||||||||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 328 GAGAAAAGTAGGAATGACTTTTAGTGAGAAGAATGGGAGAAACGTTTTCGGAGGTGAAGT 387
Query 360 TATGGCGAAAAGAGGATGCTGGTCTTTGCTTAAAGGCGGTATTACCGCTGATTTCTCAGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 388 TATGGCGAAAAGAGGATGCTGGTCTTTGCTTAAAGGCGGTATTACCGCTGATTTCTCTGG 447
Query 420 CCCTATCGACATTCTCTTCAAGAGCGATGGCTTAGCGGCCTCGGAGATATCAGTACAAAA 479
||||||||||||| ||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct 448 CCCTATCGACATTTTCTTCGAGAGCGATGGCTTAGCGGGTTTGGAGATATCAGTACAAAA 507
Query 480 TGTGAGGATGCAACGGTTCAACAAAACTCAATGGAGGCTACAACAAGACCAAATAATTGA 539
||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 508 TGTGAGGATGCAACGGTTCCACAAAACTCAATGGAGGCTACAACAAGACCAAGTTATTGA 567
Query 540 AAAGATTCGGAAGAATACAGTGAGATTTCAGATGAGTTTTCAGAACAAAAGCGCATTAAA 599
||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||| |
Sbjct 568 AAAGATTCGGAAGAATAAAGTGAGATTTCAAATGAGTTTTAAGAACAAAAGTGCATTAGA 627
Query 600 AGGATCGGTGATATCCATAGAACA-AGTCAAACCATCATTCATCCTTGGCTGTGCTATGA 658
|||||| ||||| ||||||||||| | |||||||||||||| ||||||| ||||||||||
Sbjct 628 AGGATCAGTGATTTCCATAGAACAGA-TCAAACCATCATTCCTCCTTGGTTGTGCTATGA 686
Query 659 ACTACCGAATTTTGGAAAGTGATAGCTATAAAGAATGGTTTGTGTCGCGGTTTAGACTAA 718
||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| |
Sbjct 687 ACTACCGTATTTTGGAAAGCGATAGCTATAGAGAATGGTTTGTGTCGCGGTTTAGACTCA 746
Query 719 CTTCCTTCACAAATGAAATGAAATGGTATGCAACTGAGGCAGTGAGAGGTCAAGAGAACT 778
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 CTTCATTCACCAATGAAATGAAATGGTATGCAACTGAGGCAGTGAGAGGTCAAGAGAACT 806
Query 779 ACAAATTAGCTGATTCAATGATGCAGCTCGCGGCGGAAAATGGGGTTCTAGTAAAAGGAC 838
||||| ||||||||||||||||||||||||||| |||||||| | ||||||| |||||||
Sbjct 807 ACAAAATAGCTGATTCAATGATGCAGCTCGCGGAGGAAAATGCGATTCTAGTTAAAGGAC 866
Query 839 ATACGGTCTTGTGGGACGATAAGTATTGGCAGCCAAATTGGGTTAAGACGATCACGGATC 898
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 867 ATACGGTCTTGTGGGACGATAAGTATTGGCAGCCGAATTGGGTAAAGACGATCACGGATC 926
Query 899 CTGAAGATTTGAAGAATGTGACACTCAACCGAATCAACTCGGTTATGAAGAGATATAAAG 958
|||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 927 CTGAAGATTTAAAGAATGTGACACTCAACAGAATGAACTCGGTTATGAAGAGATATAAAG 986
Query 959 GAAGATTAGTTGGATGGGATGTGATGAATGAGAATGTGCATTTCAACTACTTCGAGAACA 1018
| ||| || | |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 987 GGAGACTAATAGGATGGGATGTGATGAATGAGAATGTACATTTCAACTACTTTGAGAACA 1046
Query 1019 TGCTTGGGGGAAACGCTTCAGCTATTGTCTACTCTTTGGCCTCCACGATTG-ATCCTGAT 1077
||||||| ||||||||||||||||||||||||||||||||||| | | ||| ||||||||
Sbjct 1047 TGCTTGGTGGAAACGCTTCAGCTATTGTCTACTCTTTGGCCTCTAAG-TTGGATCCTGAT 1105
Query 1078 ATACCGTTGTTCCTGAACGAATTCAACACGGTAGAGTATGCTAAAGACAGAGTTGTGAGC 1137
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1106 ATACCGTTGTTCCTAAACGAATTCAACACGGTAGAGTATGATAAAGACAGAGTTGTGAGC 1165
Query 1138 CCTGTTAACATGGTGAAGAGGATGCAAGAGATTGTTTCATTCCCAGGAAACAGTAATATT 1197
||||||||| |||| |||| |||||||||||||||||||||||| ||||||| |||||||
Sbjct 1166 CCTGTTAACGTGGTAAAGAAGATGCAAGAGATTGTTTCATTCCCTGGAAACAATAATATT 1225
Query 1198 AAAGGAGGAATTGGAGCACAAGGTCACTTTGCTCCAATTCAGCCAAACTTGGCTTACATG 1257
|||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1226 AAAGGAGGGATTGGAGCACAAGGTCACTTTGCTCCAGTTCAGCCCAACTTGGCTTACATG 1285
Query 1258 AGATCCGCATTAGATACATTAGGCTCTTTGGGTTTTCCGGTTTGGCTTACGGAGGTGGAT 1317
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1286 AGATACGCATTAGATACATTAGGCTCTTTGAGTTTTCCGGTTTGGCTTACGGAGGTTGAT 1345
Query 1318 ATGGAT-AAGTTCCCGGATCAGGTTAAATACATGGAGGAAATTCTTAGGGAAGCTTACTC 1376
||| | |||| |||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 1346 ATGT-TCAAGTGCCCGGATCAGGTAAAATACATGGAGGATATTCTGAGGGAAGCTTACTC 1404
Query 1377 GCATCCTGCGGTTAAAGCCATAATCCTATATGGAGGGCCTGAAGTGTCCGGTTTCAACAA 1436
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1405 ACATCCTGCGGTTAAAGCCATAATCCTATATGGAGGGCCTGAAGTGTCCGGTTTCGACAA 1464
Query 1437 ATTAACGCTTGCCGATAAAGATTTCAACAACACAGACAT-AGGGGATCTCATTGACAATT 1495
|||||||||||||||||||||||||| |||||| | | |||||||||||||||||| |
Sbjct 1465 GTTAACGCTTGCCGATAAAGATTTCAAAAACACACA-AGCAGGGGATCTCATTGACAAAT 1523
Query 1496 TACTCCGAGAGTGGAAACAAGAACCTGTAGAGATTCCTATCCAACACCATGAACATAATG 1555
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 TACTCCAAGAGTGGAAACAAGAACCTGTAGAGATTCCTATCCAACACCATGAACATAATG 1583
Query 1556 ATGAAGAAG-ACGGTCCAATAATCGGGTTTTCTCCAGAGATTTCCTTACTGCATGGACAT 1614
||||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1584 ATGAAGAAGGA-GGTCGAATAATCGGGTTTTCTCCGGAGATTTCCTTACTGCATGGACAT 1642
Query 1615 TACAGAGTGACTGTAACTAATCCAACGATGAAGAACTTGTCCACCAGCTTCAGCTTGGAG 1674
||| |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 1643 TACCGAGTGACTGTAACTAATCCATCGATGAAGAACTTGTCCACCCGCTTCAGCGTGGAG 1702
Query 1675 GTAACTAAGGAGATGAG-TCATCTTCAAGAGGTTCAACTTGTACTTGATGCTTGAAAACT 1733
|||||||||||| | || |||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1703 GTAACTAAGGAG-TCAGGTCATCTTCAAGAAGTTCAACTTGTAATTGATGCTTGAAAACT 1761
Query 1734 GAACTATATTATGTATCATATATTGTGAATCATCCTATGAGAGATTATACA 1784
| |||||||||||||||| |||||||||||||||| ||||||| |||||||
Sbjct 1762 GCACTATATTATGTATCACATATTGTGAATCATCCCATGAGAGGTTATACA 1812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88252558110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5