BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480360
Length=2385
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14720.1 | Symbols: VSR4, VSR2;1, BP80-2;1, MTV4 | vacuolar ... 3567 0.0
AT2G14740.1 | Symbols: ATVSR3, VSR3, VSR2;2, BP80-2;2 | vaculol... 2857 0.0
AT4G06498.1 | Symbols: | pseudogene, vacuolar sorting receptor... 152 1e-35
> AT2G14720.1 | Symbols: VSR4, VSR2;1, BP80-2;1, MTV4 | vacuolar
sorting receptor 4 | chr2:6300488-6304359 REVERSE LENGTH=2480
Length=2480
Score = 3567 bits (1931), Expect = 0.0
Identities = 2235/2377 (94%), Gaps = 40/2377 (2%)
Strand=Plus/Plus
Query 36 AAGACGTTGAACAAACAAATCTCTCGATTTTCTCGGaaaaaaaaaCACTCCAACTACGAA 95
|||||||| ||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct 1 AAGACGTTAAACAAAC-CATCTCTCGATTCTCTCGG----GAAAACACTCCAACTACGAA 55
Query 96 TCTTCGATCATCGAGAGCACATACAAAGACGAAGATTTCAAATTCAATCATCAATCATCT 155
||| | |||||| ||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 56 TCTACAATCATC--GAGCACATACAAAGAGGAAGATTTCAAATCCAATCATCAATCATCT 113
Query 156 CTTTTG-A--AT--G-----ATC--CTTGCTCCTTAAATTTGTTGTTGATCC-TTCGAA- 201
|||||| | || | ||| |||||||||||||||| |||||||||| || |||
Sbjct 114 CTTTTGAATGATCCGATTCCATCTACTTGCTCCTTAAATTTATTGTTGATCCGTTTGAAT 173
Query 202 --------T-TTGAGACGGAGATCTCGAAGATGAAGCAGCTTCTGTGTTATCTTCCATGG 252
| ||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 174 TTGGTGTTTGTTGAGGCGGAGATCTCGAAGATGAAGCAGCTTCTATGTTATCTTCCATGG 233
Query 253 ---CTGCTTCTCTCTCTTCTGGTTTCCCCTTTTAGCGAAGCTCGATTCGTGGTGGAGAAG 309
|| |||||||||||| ||||||||||||||| ||| ||||||||||| |||||||||
Sbjct 234 CTTCTTCTTCTCTCTCTTGTGGTTTCCCCTTTTAACGAGGCTCGATTCGTTGTGGAGAAG 293
Query 310 AATAGTTTGTCGGTGACATCGCCGGAGAGTATAAAAGGAACACATGATAGTGCAATTGGT 369
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 294 AATAGTTTGTCGGTGACTTCGCCGGAGAGTATAAAAGGAACTCATGATAGTGCAATTGGT 353
Query 370 AACTTTGGGATTCCTCAGTACGGCGGAAGTATGGCCGGAACGGTGGTTTATCCTAAAGAG 429
||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 354 AACTTCGGGATTCCTCAGTACGGTGGAAGTATGGCTGGTACGGTGGTTTATCCTAAAGAG 413
Query 430 AATCAGAAATCGTGTAAGGAGTTTAGCGATTTCTCGATTTCGTTTAAGTCTCAGCCTGGT 489
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 414 AATCAGAAATCGTGTAAGGAATTTAGCGATTTCTCGATTTCGTTCAAGTCTCAGCCTGGT 473
Query 490 GCTTTACCTACTTTCCTCTTGGTTGATCGTGGAGATTGTTTCTTCGCTTTGAAGGTTTGG 549
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 474 GCTTTACCTACTTTCCTCTTAGTTGATCGTGGAGATTGTTTCTTCGCTTTGAAGGTATGG 533
Query 550 AATGCACAGAAAGCGGGTGCTTCTGCTGTTCTTGTGGCTGACAATGTTGATGAACCTTTG 609
|| ||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 534 AACGCACAGAAAGCAGGTGCTTCTGCTGTTCTTGTAGCTGATAATGTTGATGAGCCTTTG 593
Query 610 ATTACAATGGATACACCTGAAGAGGATGTTTCGTCTGCTAAGTATATTGAGAATATTACT 669
||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||
Sbjct 594 ATTACAATGGATACACCTGAAGAAGATGTTTCTTCTGCAAAGTATATCGAGAATATTACT 653
Query 670 ATACCTTCTGCTCTTGTTACTAAAGGTTTTGGTGAAAAGCTGAAGAAAGCGATTAGTGGA 729
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 654 ATACCTTCTGCTCTTGTTACTAAAGGTTTTGGTGAAAAGCTGAAGAAAGCTATTAGTGGA 713
Query 730 GGTGATATGGTTAACTTGAATCTTGACTGGAGAGAGGCTGTTCCCCACCCTGATGACCGT 789
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 714 GGTGATATGGTTAACTTGAATCTTGACTGGAGAGAGGCTGTTCCACATCCTGATGACCGT 773
Query 790 GTTGAGTATGAGTTGTGGACCAATAGCAATGATGAATGTGGGGTTAAGTGTGACATGTTG 849
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 774 GTTGAGTATGAGTTGTGGACTAATAGTAATGATGAATGTGGGGTTAAGTGTGATATGTTG 833
Query 850 ATGGAGTTTGTGAAAGATTTCAAGGGTGCTGCTCAGATTCTTGAGAAAGGAGGTTTCACG 909
|||||||||||||| ||||| ||||| || || ||||||||||||||||| ||||| |||
Sbjct 834 ATGGAGTTTGTGAAGGATTTTAAGGGAGCGGCGCAGATTCTTGAGAAAGGCGGTTTTACG 893
Query 910 CAGTTTAGACCTCATTACATCACCTGGTATTGTCCTCACGCTTTCACGTTGAGCCGACAG 969
|||||||| |||||||| || || |||||||||||||| |||||||||||||| ||||||
Sbjct 894 CAGTTTAGGCCTCATTATATTACTTGGTATTGTCCTCATGCTTTCACGTTGAGTCGACAG 953
Query 970 TGCAAGTCTCAGTGTATCAATAAGGGAAGATACTGTGCTCCTGATCCAGAACAGGACTTC 1029
|| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 954 TGTAAGTCTCAGTGTATCAATAAAGGAAGGTACTGTGCTCCTGATCCAGAGCAGGACTTT 1013
Query 1030 AGCTCAGGATACGATGGAAAAGACGTGGTTGTGGAAAACTTGAGACAGCTCTGTGTTTTC 1089
||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
Sbjct 1014 AGCTCGGGATACGATGGAAAAGACGTGGTTGTGGAAAATTTGAGACAGCTTTGTGTTTAC 1073
Query 1090 AAGGTGGCAAATGAAACCGGCAAACCCTGGGTCTGGTGGGATTACGTCACTGATTTCCAG 1149
|||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 1074 AAGGTGGCGAATGAAACCGGCAAACCTTGGGTCTGGTGGGATTATGTTACTGATTTCCAG 1133
Query 1150 ATCAGATGTCCCATGAAGGAGAAGAAGTACAACAAAGATTGTGCTGAGTCTGTTATTAAA 1209
||||||||||| ||||||||||| || |||||||||||||||||||||||||| || |||
Sbjct 1134 ATCAGATGTCCAATGAAGGAGAAAAAATACAACAAAGATTGTGCTGAGTCTGTAATCAAA 1193
Query 1210 TCTCTTGGAATCGATAGTAGAAAAATTGACAAGTGTATGGGAGACCCCGATGCTGACTTG 1269
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1194 TCTCTTGGAATCGATAGCAGAAAAATTGACAAGTGTATGGGAGACCCTGATGCTGACTTG 1253
Query 1270 GACAACCCTGTTCTAAAGGAAGAACAAGACGCTCAAGTTGGCAAGGGTACAAGGGGTGAT 1329
||||| || ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1254 GACAATCCAGTTTTAAAGGAAGAACAAGATGCTCAAGTTGGCAAGGGTACAAGGGGTGAT 1313
Query 1330 GTTACCATATTGCCTACCTTAGTTGTCAACAACAGACAGTACCGAGGCAAGTTGGAGAAG 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GTTACCATATTGCCTACCTTAGTTGTCAACAACAGACAGTACCGAGGCAAGTTGGAGAAG 1373
Query 1390 AGTGCAGTACTCAAGGCTCTTTGCTCTGGTTTTGAGGAGTCAACTGAACCAGCTATATGC 1449
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1374 AGTGCAGTACTCAAGGCTCTATGCTCTGGTTTTGAGGAGTCAACTGAACCAGCTATATGC 1433
Query 1450 CTCAGCACAGATATGGAGACAAACGAGTGCTTAGATAACAATGGTGGTTGTTGGCAAGAT 1509
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1434 CTCAGCACAGATATGGAGACAAACGAGTGCTTAGATAACAATGGCGGTTGTTGGCAAGAT 1493
Query 1510 AAATCAGCTAACATAACTGCTTGCAAGGATACGTTTCGTGGAAAAGTATGTGTGTGTCCT 1569
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1494 AAATCAGCCAACATAACTGCTTGCAAGGATACGTTTCGTGGAAAAGTATGCGTGTGTCCT 1553
Query 1570 ATAGTTGATGGTGTGAGGTTCAAAGGGGATGGTTACAGCCACTGTGAGCCAAGCGGGCCA 1629
||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1554 ATAGTTGATGGTGTGCGATTCAAAGGAGATGGTTACAGCCACTGTGAGCCAAGCGGGCCA 1613
Query 1630 GGGAGATGTACAATCAACAATGGAGGTTGTTGGCATGAAGAGAGAGATGGACATGCGTTC 1689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 GGGAGATGTACAATCAACAATGGAGGTTGTTGGCATGAAGAGAGAGATGGACATGCGTTC 1673
Query 1690 TCTGCTTGTGTGGACAAGGACAGTGTGAAATGCGAGTGTCCTCCAGGATTTAAAGGAGAC 1749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 TCTGCTTGTGTGGACAAGGACAGTGTGAAATGCGAGTGTCCTCCAGGATTTAAAGGAGAC 1733
Query 1750 GGTGTTAAGAAATGTGAAGACATTAATGAGTGCAAAGAGAAGAAAGCCTGTCAGTGCCCG 1809
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1734 GGTGTTAAGAAATGTGAAGACATCAATGAGTGCAAAGAGAAGAAAGCATGTCAGTGCCCG 1793
Query 1810 GAATGTAGCTGTAAGAACACCTGGGGAAGTTACGAGTGCTCTTGTAGCGGGGACCTTCTC 1869
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1794 GAATGTAGCTGTAAGAACACCTGGGGAAGCTATGAGTGCTCTTGTAGCGGGGACCTTCTC 1853
Query 1870 TACATGAGAGACCATGACACTTGCATCAGCAAGACGGGTTCACAAGTGAAATCAGCGTGG 1929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 TACATGAGAGACCATGACACTTGCATCAGCAAGACGGGTTCACAAGTGAAATCAGCGTGG 1913
Query 1930 GCGGCCGTTTGGCTTATTATGTTATCATTGGGACTTGCAGCTGCTGGTGCATACCTCGTT 1989
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 GCGGCCGTTTGGCTTATAATGTTATCATTGGGACTTGCAGCTGCTGGTGCATACCTCGTT 1973
Query 1990 TACAAATATAGATTGAGGCAATACATGGACTCAGAGATCAGAGCCATAATGGCACAGTAC 2049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1974 TACAAATATAGATTGAGGCAATACATGGACTCAGAGATCAGAGCCATAATGGCACAGTAC 2033
Query 2050 ATGCCACTGGACAGCCAACCCGAGGTCCCGAACCACGCGAATGATGAACATGCCTGAGA- 2108
|||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| |||
Sbjct 2034 ATGCCACTGGACAGCCAACCTGAGGTCCCGAACCACACGAATGATGAACGTGCCTAAGAG 2093
Query 2109 AAGCGAAATGGTCCATATATCTATTTATTCCCCCGGAAAGGAATCAATGCGAAGCGTTCT 2168
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2094 AA-CGAAATGGTCCAT----CTATTTATTCCCCCGGAAAGGAATCAATGCGAAGCGTTCT 2148
Query 2169 TTTAATTGATGTGGCCCTTGATGCCGGTGtttttttttCGCATCTGTATCTCTGTAACTC 2228
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 2149 TTTAATTGATGTGGCCCTTGATACCGGTGTTCTTTTT-CGCATCTGTATCTCTGTAACTC 2207
Query 2229 TTTGTACCAAACAGTGTATCCTATGTTCTTGTCACTTGTGTCCATGTGATTTCTGTAATA 2288
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 2208 TTTGTACCAAACAGTGTATCCTATGTTCTTGTCAATTGTGTCCATGTGACTTCTGTAATA 2267
Query 2289 GGGAAACTTCGATGTAGCTTCGGAGAACTGGACAAGCTAGTCAATAGAATCAAAACATCA 2348
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2268 GGGAAACTTCGATGTAGCTACGGAGAACTGGACAAGCTAGTCAATAGAATCAAAACATCA 2327
Query 2349 AAGTTTTAAAGTTAAATCTTTTAGCCTTGGACAAGTT 2385
|||| ||||||||||||||||||| ||||||||||||
Sbjct 2328 AAGTGTTAAAGTTAAATCTTTTAGTCTTGGACAAGTT 2364
> AT2G14740.1 | Symbols: ATVSR3, VSR3, VSR2;2, BP80-2;2 | vaculolar
sorting receptor 3 | chr2:6308895-6312589 FORWARD LENGTH=2173
Length=2173
Score = 2857 bits (1547), Expect = 0.0
Identities = 1864/2017 (92%), Gaps = 21/2017 (1%)
Strand=Plus/Plus
Query 223 ATGAAGCAGCTTCTGTGTTATCTTCCATGGCTGCTTCT-CT--CTCTTCTGGTTTCCCCT 279
|||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 1 ATGAAGCAGCTTCTGTGTTACCTTCCATGGCTGCTTCTCCTCACTCTTCTGGTTTCCCCT 60
Query 280 TTTAGCGAAGCTCGATTCGTGGTGGAGAAGAATAGTTTGTCGGTGACATCGCCGGAGAGT 339
|| | ||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 61 TTAAACGACGCTCGATTCGTGGTGGAGAAGAACAGTTTGTCCGTGACGTCGCCGGAGAGT 120
Query 340 ATAAAAGGAACACATGATAGTGCAATTGGTAACTTTGGGATTCCTCAGTACGGCGGAAGT 399
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 121 ATAAAAGGAACTCATGATAGTGCAATTGGTAACTTCGGGATTCCTCAATACGGTGGAAGT 180
Query 400 ATGGCCGGAACGGTGGTTTATCCTAAAGAGAATCAGAAATCGTGTAAGGAGTTTAGCGAT 459
||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 181 ATGGCTGGTACGGTGGTTTATCCGAAAGAGAATCAGAAATCGTGTAAGGAATTTAGCGAT 240
Query 460 TTCTCGATTTCGTTTAAGTCTCAGCCTGGTGCTTTACCTACTTTCCTCTTGGTTGATCGT 519
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 TTCTCGATTTCGTTCAAGTCTCAGCCTGGTGCTTTACCTACTTTCCTCTTAGTTGATCGT 300
Query 520 GGAGATTGTTTCTTCGCTTTGAAGGTTTGGAATGCACAGAAAGCGGGTGCTTCTGCTGTT 579
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 301 GGAGATTGTTTCTTCGCTTTGAAGGTATGGAACGCACAGAAAGCAGGTGCTTCTGCTGTT 360
Query 580 CTTGTGGCTGACAATGTTGATGAACCTTTGATTACAATGGATACACCTGAAGAGGATGTT 639
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 CTTGTAGCTGATAATGTTGATGAACCTTTGATTACAATGGATACACCTGAAGAAGATGTT 420
Query 640 TCGTCTGCTAAGTATATTGAGAATATTACTATACCTTCTGCTCTTGTTACTAAAGGTTTT 699
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTTCTGCAAAGTATATTGAGAATATTACTATACCTTCTGCTCTTGTTACTAAAGGTTTT 480
Query 700 GGTGAAAAGCTGAAGAAAGCGATTAGTGGAGGTGATATGGTTAACTTGAATCTTGACTGG 759
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 481 GGTGAAAAGCTGAAGAAAGCTATTAGTGGAGGAGATATGGTTAACTTGAATCTTGACTGG 540
Query 760 AGAGAGGCTGTTCCCCACCCTGATGACCGTGTTGAGTATGAGTTGTGGACCAATAGCAAT 819
|||||||||||||| || |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 541 AGAGAGGCTGTTCCGCATCCTGATGACCGTGTTGAGTATGAGTTGTGGACTAATAGTAAT 600
Query 820 GATGAATGTGGGGTTAAGTGTGACATGTTGATGGAGTTTGTGAAAGATTTCAAGGGTGCT 879
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 601 GATGAATGTGGGGTTAAGTGTGATATGTTGATGGAGTTTGTGAAAGATTTTAAGGGAGCG 660
Query 880 GCTCAGATTCTTGAGAAAGGAGG-TTTCACGCAGTTTAGACCTCATTACATCACCTGGTA 938
|| ||||||||||||||||| || ||| |||||||||||||||||||| || || |||||
Sbjct 661 GCGCAGATTCTTGAGAAAGGCGGGTTT-ACGCAGTTTAGACCTCATTATATTACTTGGTA 719
Query 939 TTGTCCTCACGCTTTCACGTTGAGCCGACAGTGCAAGTCTCAGTGTATCAATAAGGGAAG 998
||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 720 TTGTCCTCATGCTTTCACGTTGAGTCGACAGTGTAAGTCTCAGTGTATCAATAAAGGAAG 779
Query 999 ATACTGTGCTCCTGATCCAGAACAGGACTTCAGCTCAGGATACGATGGAAAAGACGTGGT 1058
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||
Sbjct 780 GTACTGTGCTCCTGATCCAGAGCAGGACTTTAGCTCGGGATACGATGGAAAAGATGTGGT 839
Query 1059 TGTGGAAAACTTGAGACAGCTCTGTGTTTTCAAGGTGGCAAATGAAACCGGCAAACCCTG 1118
|||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| ||
Sbjct 840 CGTGGAAAACTTGAGACAGCTTTGTGTTTACAAGGTGGCGAATGAAACCGGCAAACCTTG 899
Query 1119 GGTCTGGTGGGATTACGTCACTGATTTCCAGATCAGATGTCCCATGAAGGAGAAGAAGTA 1178
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 GGTCTGGTGGGATTATGTTACTGATTTCCAGATCAGATGTCCCATGAAGGAGAAGAAATA 959
Query 1179 CAACAAAGATTGTGCTGAGTCTGTTATTAAATCTCTTGGAATCGATAGTAGAAAAA-TTG 1237
||| || || |||||||| || ||||| |||||||||||||| ||||||| ||||| |||
Sbjct 960 CAATAAGGAGTGTGCTGATTCCGTTATCAAATCTCTTGGAATTGATAGTA-AAAAACTTG 1018
Query 1238 ACAAGTGTATGGGAGACCCCGATGCTGACTTGGACAACCCTGTTCTAAAGGAAGAACAAG 1297
||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||
Sbjct 1019 ACAAGTGTATGGGAGACCCTGATGCTGACTTGGACAATCCAGTTCTTAAGGAAGAACAAG 1078
Query 1298 ACGCTCAAGTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCA 1357
| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1079 ATGCTCAAGTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTCA 1138
Query 1358 ACAACAGACAGTACCGAGGCAAGTTGGAGAAGAGTGCAGTACTCAAGGCTCTT-TGCTCT 1416
||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||
Sbjct 1139 ACAACAGACAGTACCGAGGAAAGTTGGAGAAGAGTGCAGTACTCAAGGCT-TTATGCTCT 1197
Query 1417 GGTTTTGAGGAGTCAACTGAACCAGCTATATGCCTCAGCACAGATATGGAGACAAACGAG 1476
|||||||||||| | ||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 1198 GGTTTTGAGGAGACCACTGAACCAGCGATATGCCTCAGCACAGATGTGGAGTCAAACGAG 1257
Query 1477 TGCTTAGATAACAATGGTGGTTGTTGGCAAGATAAATCAGCTAACATAACTGCTTGCAAG 1536
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1258 TGCTTAGATAACAATGGTGGTTGTTGGCAAGATAAATCAGCCAACATAACTGCTTGCAAG 1317
Query 1537 GATACGTTTCGTGGAAAAGTATGTGTGTGTCCTATAGTTGATGGTGTG-AGGTTCAAAGG 1595
||||| |||||||||| |||||| | |||||||| ||||||||||||| | ||||||||
Sbjct 1318 GATACTTTTCGTGGAAGAGTATGCGAGTGTCCTACAGTTGATGGTGTGCAA-TTCAAAGG 1376
Query 1596 GGATGGTTACAGCCACTGTGAGCCAAGCGGGCCAGGGAGATGTACAATCAACAATGGAGG 1655
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1377 GGATGGTTACAGTCACTGTGAACCAAGCGGGCCAGGGAGATGCACAATCAACAATGGAGG 1436
Query 1656 TTGTTGGCATGAAGAGAGAGATGGACATGCGTTCTCTGCTTGTGTGGACAAGGACAGTGT 1715
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TTGTTGGCATGAAGAGCGAGATGGACATGCGTTCTCTGCTTGTGTGGACAAGGACAGTGT 1496
Query 1716 GAAATGCGAGTGTCCTCCAGGATTTAAAGGAGACGGTGTTAAGAAATGTGAAGACATTAA 1775
|| ||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 1497 TAAGTGCGAGTGTCCTCCAGGATTTAAAGGAGATGGTACTAAGAAGTGTGAAGACATTAA 1556
Query 1776 TGAGTGCAAAGAGAAGAAAGCCTGTCAGTGCCCGGAATGTAGCTGTAAGAACACCTGGGG 1835
||||||||||||||||||||| || |||||||| || |||||||| |||||||| |||||
Sbjct 1557 TGAGTGCAAAGAGAAGAAAGCATGCCAGTGCCCAGAGTGTAGCTGCAAGAACACATGGGG 1616
Query 1836 AAGTTACGAGTGCTCTTGTAGCGGGGACCTTCTCTACATGAGAGACCATGACACTTGCAT 1895
||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1617 AAGCTATGAGTGCTCTTGTAGCGGGGACCTTCTCTACATCAGAGATCATGACACTTGCAT 1676
Query 1896 CAGCAAGACGGGTTCACAAGTGAAATCAGCGTGGGCGGCCGTTTGGCTTATTATGTTATC 1955
||||||||||||| ||||||||| |||||| |||||||||||||||||||| ||||||||
Sbjct 1677 CAGCAAGACGGGTGCACAAGTGAGATCAGCATGGGCGGCCGTTTGGCTTATAATGTTATC 1736
Query 1956 ATTGGGACTTGCAGCTGCTGGTGCATACCTCGTTTACAAATATAGATTGAGGCAATACAT 2015
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1737 ATTGGGACTTGCAGCTGCTGGTGCATACCTCGTTTACAAATATAGGCTAAGGCAATACAT 1796
Query 2016 GGACTCAGAGATCAGAGCCATAATGGCACAGTACATGCCACTGGACAGCCAACCCGAGGT 2075
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1797 GGACTCAGAGATCAGAGCCATAATGGCACAGTACATGCCATTGGACAGCCAACCCGAGAT 1856
Query 2076 CCCGAACCACGCGAATGATGAACATGCCTGAGAAAGCGAAATGGTCCATATATCTATTTA 2135
||||||||||| ||||||||||| |||||||||||| ||| |||||| |||||||
Sbjct 1857 CCCGAACCACGTGAATGATGAACGCGCCTGAGAAAGCAAAACAGTCCAT----CTATTTA 1912
Query 2136 TTCCCCCGGAAAGGAATCAATGCGA-AGCGTTCTTTTAATTGATGTGGCCCTTGATGCCG 2194
|||||| |||| ||| ||| | || | ||||||||||| ||||||||||||| | | ||
Sbjct 1913 TTCCCCGGGAA-GGACCCAAGGTGACA-CGTTCTTTTAACTGATGTGGCCCTTAACGACG 1970
Query 2195 GTGtttttttttCGCATCTGTATCTCTGTAACTCTTT 2231
|||||| | ||| ||||||||| |||||||||||
Sbjct 1971 ATGTTTTCT---CGCCTCTGTATCTTTGTAACTCTTT 2004
> AT4G06498.1 | Symbols: | pseudogene, vacuolar sorting receptor
-related, similar to BP-80 vacuolar sorting receptor GP:1737222
{Pisum sativum}; blastp match of 78% identity and 8.8e-70
P-value to GP|1737222|gb|AAB72110.1||U79958 BP-80 vacuolar
sorting receptor {Pisum sativum} | chr4:3145693-3147708
FORWARD LENGTH=2016
Length=2016
Score = 152 bits (82), Expect = 1e-35
Identities = 88/91 (97%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 1374 AGGCAAGTTGGAGAAGAGTGCAGTACTCAAGGCTCTTTGCTCTGGTTTTGAGGAGTCAAC 1433
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 708 AGGCAAGTTGGAGAAGAGTGCAGTACTCAAGGCTCTATGCTCTGGTTTTGAGGAGTCAAC 767
Query 1434 TGAACCAGCTATATGCCTCAGCACAGATATG 1464
|||||| ||||||||||||||||||| ||||
Sbjct 768 TGAACCTGCTATATGCCTCAGCACAGGTATG 798
Score = 134 bits (72), Expect = 5e-30
Identities = 81/85 (95%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 1619 CAAGCGGGCCAGGGAGATGTACAATCAAC-AATGGAGGTTGTTGGCATGAAGAGAGAGAT 1677
||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1543 CAAGCGGGCTAGGGAGATGTTCAATCAACAAATGGAGGTTGTTGGCATGAAGAGAGAGAT 1602
Query 1678 GGACATGCGTTCTCTGCTTGTGTGG 1702
||||||||||||| |||||||||||
Sbjct 1603 GGACATGCGTTCTTTGCTTGTGTGG 1627
Score = 132 bits (71), Expect = 2e-29
Identities = 71/71 (100%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 1306 GTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAACAACAGA 1365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 GTTGGCAAGGGTACAAGGGGTGATGTTACCATATTGCCTACCTTAGTTGTCAACAACAGA 626
Query 1366 CAGTACCGAGG 1376
|||||||||||
Sbjct 627 CAGTACCGAGG 637
Score = 121 bits (65), Expect = 4e-26
Identities = 82/90 (91%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 1456 ACAGATATGGAGACAAACGAGTGCTTAGATAACAATGGTGGTTGTTGGCAAGATAAATCA 1515
||||||||| |||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct 991 ACAGATATGTAGACAAACGAGTGCTTAGATAACAATGGCGATTCTTGGCAAGATAAATCA 1050
Query 1516 GCTAACATAACTGCTTGCAAGGATACGTTT 1545
| ||||||||||||||||||| ||| |||
Sbjct 1051 CCCAACATAACTGCTTGCAAGG-TACTTTT 1079
Score = 110 bits (59), Expect = 9e-23
Identities = 65/68 (96%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 1701 GGACAAGGACAGTGTGAAATGCGAGTGTCCTCCAGGATTTAAAGGAGACGGTGTTAAGAA 1760
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 GGATAAGGACAGTGTCAAATGCGAGTGTCCTCCAGGATTTAAAGGAGACGGTGTTAAGAA 1777
Query 1761 ATGTGAAG 1768
|| |||||
Sbjct 1778 ATTTGAAG 1785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118423085655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5