BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480365
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14750.1 | Symbols: APK, AKN1, ATAKN1, APK1 | APS kinase | c... 1537 0.0
> AT2G14750.1 | Symbols: APK, AKN1, ATAKN1, APK1 | APS kinase |
chr2:6314032-6315766 FORWARD LENGTH=1192
Length=1192
Score = 1537 bits (832), Expect = 0.0
Identities = 927/973 (95%), Gaps = 6/973 (1%)
Strand=Plus/Plus
Query 36 TTCTTCTTTTTTATTTCCCCCACCACCGTGAAATATGATTGCCGCCGGAGCTAAATCGCT 95
||||| | |||||||||| |||||||||||| ||||||| ||||||||||||||||||||
Sbjct 63 TTCTTATATTTTATTTCCTCCACCACCGTGAGATATGATCGCCGCCGGAGCTAAATCGCT 122
Query 96 ATTTGGGCTTTCGATTGCTTCTCCAAAAGGGCTTTCCGATAACAATTCAATGAGTAATTC 155
||| ||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct 123 ATTAGGGCTTTCGATGGCTTCTCCAAAAGGGATTTTCGATAGCAATTCAATGAGTAATTC 182
Query 156 AAGATCTGTTGTTGTTGTTCGTGCTTGTGTTTCTATGGATGGATCACAAACTCTGAGTCA 215
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 183 AAGATCTGTTGTTGTTGTTCGTGCTTGTGTTTCTATGGATGGATCTCAAACTCTGAGTCA 242
Query 216 TAGCAAAAATGGATCTATTCCTGAGCTTAAATCGATTAACGGTCACACGGGACAAAAGCA 275
|| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 243 TAACAAAAATGGATCTATTCCTGAGGTTAAATCCATTAACGGTCACACGGGACAAAAGCA 302
Query 276 AGGTCCTTTGTCTACGGTCGGAAACTCGACAAACATAAAGTGGCATGAGTGTTCTGTTGA 335
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 303 AGGACCTTTGTCTACGGTCGGAAACTCGACAAATATAAAGTGGCATGAATGTTCTGTTGA 362
Query 336 GAAAGTTGATCGACAGAGATTGCTTGATCAGAAAGGATGTGTGATTTGGGTCACCGGTCT 395
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GAAAGTTGATAGACAGAGATTGCTTGATCAGAAAGGATGTGTGATTTGGGTCACCGGTCT 422
Query 396 TAGTGGTTCAGGGAAGAGTACTTTGGCTTGTGCTTTGAATCAGATGTTGTATCAAAAGGG 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TAGTGGTTCAGGGAAGAGTACTTTGGCTTGTGCTTTGAATCAGATGTTGTATCAAAAGGG 482
Query 456 GAAGCTTTGTTATATTCTTGATGGTGATAATGTTAGGCATGGCTTAAACCGTGATCTTAG 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GAAGCTTTGTTATATTCTTGATGGTGATAATGTTAGGCATGGCTTAAACCGTGATCTTAG 542
Query 516 CTTTAAAGCTGAGGATCGTGCAGAGAATATTCGTAGAGTCGGAGAGGTTGCTAAGCTCTT 575
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 543 CTTTAAAGCTGAGGATCGTGCAGAGAATATTCGTAGAGTTGGAGAGGTTGCTAAGCTTTT 602
Query 576 TGCGGATGCCGGAATCATCTGCATTGCTAGTTTGATATCTCCTTATAGAACAGACAGGGA 635
||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 603 TGCGGATGCTGGAATAATCTGCATTGCGAGTTTGATATCTCCTTATAGAACAGATAGGGA 662
Query 636 CGCTTGTCGAAATTTGCTCCCCGAGGGAGATTTTGTCGAGGTGTTCATGGATGTACCGCT 695
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 663 CGCTTGTCGAAGTTTGCTCCCCGAGGGAGATTTTGTTGAGGTGTTCATGGATGTACCGCT 722
Query 696 T-GAAGTTTGCGAGGCGAGGGATCCCAAGGGTCTTTACAAGCTCGCTCGTGCAGGAAAGA 754
| | |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 723 TAGT-GTTTGCGAGGCGAGGGATCCAAAGGGTCTTTACAAGCTTGCTCGTGCAGGAAAGA 781
Query 755 TCAAAGGTTTTACCGGGATCGATGACCCTTACGAGCCACCATTGAACTGCGAGATTTCTC 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TCAAAGGTTTTACCGGGATCGATGACCCTTACGAGCCACCATTGAACTGCGAGATTTCTC 841
Query 815 TAGGACGCGAAGGATCGGGAACTTCTCCAATCGAAATGGCTGAAAAGGTCATCGGATACT 874
||||||| |||||| || ||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 842 TAGGACGTGAAGGA--GG-AACTTCTCCTATCGAAATGGCGGAAAAGGTCGTCGGATACT 898
Query 875 TAGATAACAAGGGTTATCTTCAGGCATAACATACTT-TAGCTACACAAATTTGTTATCCC 933
|||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |
Sbjct 899 TAGATAACAAGGGTTATCTTCAAGCATAACATACTTCTAGATACACAAATTTGTTATCTC 958
Query 934 ACGGTCATAGTTCTATTTAACAAGCCAAAGTATAAAATTAAGCAAATCCATGGCTGTTTT 993
|||||| ||||||||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct 959 ACGGTCTTAGTTCTATTTTACGAGCCAAAGTATAAAAGTAAGCAAATCCATGGCTGTTTT 1018
Query 994 ATGGAATCACAAG 1006
|||||||||||||
Sbjct 1019 ATGGAATCACAAG 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49279698207
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5