BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480366
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1197 0.0
AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | ch... 327 1e-88
> AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:6321587-6323397 REVERSE LENGTH=1364
Length=1364
Score = 1197 bits (648), Expect = 0.0
Identities = 723/760 (95%), Gaps = 2/760 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGCCATGGGAGAATGGAGCACCGGCCTAGGCGGAATTTATACAGAGGAAGCTGAC 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 86 ATGGAAGCCATGGGAGAATGGAGCACCGGCCTAGGCGGAATATATACAGAGGAAGCTGAC 145
Query 61 TTTATGAATCAGCTTCTTGCATCCTATGAGCAACCTTGTGGCGGTTCATCTTCAGAGACA 120
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 146 TTTATGAATCAGCTCCTTGCCTCCTATGAGCAACCTTGTGGCGGTTCATCTTCAGAGACA 205
Query 121 ACCGCCACACTCGCGGCCTACCACCACCAGAGTTCTCACTGGAATGGTGGCTTTTGCTTC 180
|||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 206 ACCGCCACACTCACGGCCTACCACCACCAGGGTTCTCAATGGAATGGTGGCTTTTGCTTC 265
Query 181 TCCCAAGAGAGCAGCAGTTACAGTGGTTACTGCACGGTGATGCCACGGCAAGAAGAAGAC 240
|| || |||||||| ||||| |||||||||||| ||| |||||||||||||||||||||
Sbjct 266 TCTCAGGAGAGCAGTAGTTATAGTGGTTACTGCGCGGCGATGCCACGGCAAGAAGAAGAT 325
Query 241 AACAATGGGATGGAAGACGCGACAATCAACACGAACTTGTA-CTTAGTTGGTGAAGAGAC 299
|||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 326 AACAATGGGATGGAGGACGCGACAATCAACACGAACTTGTACCTT-GTTGGTGAAGAGAC 384
Query 300 AAGTGAATGTGATGTGACGGAATACTCCGGTAAAAGCATCTTGCCTTTGGAGACTGTCGC 359
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 385 AAGTGAATGTGATGCGACGGAATACTCCGGTAAAAGCCTCTTGCCTTTGGAGACTGTCGC 444
Query 360 AGAAAACCACGACCATAGTATGCTACAGCCTGAGAACTCCTTGACAAAGACCACTGATGA 419
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 445 AGAAAACCACGACCATAGTATGCTACAGCCTGAGAACTCCTTGACCACGACCACTGATGA 504
Query 420 GAAACTGTTCAACCCATGTGAGAGTTCTAAGAAGAGGACTCGTGCCACATCAACTGATAA 479
|||| ||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct 505 GAAAATGTTCAACCAATGTGAGAGTTCAAAGAAGAGGACGCGTGCCACAACAACTGATAA 564
Query 480 GAATAAGAGAGCCAACAAGGCACGGAGGAGCCAAAAAGGCATAGAGATGAGTGGCGATAA 539
||| |||||||||||||||||||| |||||||| ||| || |||||||||||||||| ||
Sbjct 565 GAACAAGAGAGCCAACAAGGCACGAAGGAGCCAGAAATGCGTAGAGATGAGTGGCGAAAA 624
Query 540 TGAAAATATCGGCGAAGAAGAATATACGGAGAAGGCTGTAGGGAAGAGAAAGACCAAACC 599
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 625 TGAAAATAGCGGCGAAGAAGAATATACGGAGAAGGCTGCGGGGAAGAGAAAGACCAAACC 684
Query 600 ACTTAAGCCGCAAAAGACTTGTTGTTCGGATGACGAATCAAACGGTGGAGACACTTTCTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 ACTTAAGCCGCAAAAGACTTGTTGTTCGGATGACGAATCAAACGGTGGAGACACTTTCTT 744
Query 660 GTCCAAAGAAGATGGCGAGGACTCTAAGGCTCTCAACCTCAACGGCAAGACAAGGGCCAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 745 GTCCAAAGAAGATGGCGAGGACTCTAAGGCTCTCAACCTCAACGGCAAGACTAGGGCCAG 804
Query 720 CCGCGGCGCTGCCACAGATCCTCAAAGCCTTTATGCAAGG 759
||||||||| ||||||||||||||||||||||| ||||||
Sbjct 805 CCGCGGCGCGGCCACAGATCCTCAAAGCCTTTACGCAAGG 844
Score = 747 bits (404), Expect = 0.0
Identities = 458/483 (95%), Gaps = 7/483 (1%)
Strand=Plus/Plus
Query 759 GAAAAGAAGAGAGAGGATAAACGAGAGGCTAAGGATTTTGCAACATCTTGTCCCTAATGG 818
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 883 GAAAAGAAGAGAGAGGATAAACGAGAGGCTAAGGATTTTGCAACATCTCGTCCCTAATGG 942
Query 819 AACAAAGGTACATATTAGCACGATGTTGGAAGAAGCAGTACAATACGTCAAATTTTTGCA 878
||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 943 AACAAAGGTTGATATTAGCACGATGTTGGAAGAAGCAGTACAATACGTCAAATTTCTACA 1002
Query 879 GCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATGTATGCGCCCATTGCTTACAA 938
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1003 GCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATGTATGCGCCTATTGCTTACAA 1062
Query 939 CGGAATGGACATTGGCCTTGACCTAAAACTCAATGCACTGACAAGATGATTCAAGAGACA 998
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1063 CGGAATGGACATTGGCCTTGACCTAAAACTCAATGCACTGACCAGATGATTCAAGAGACA 1122
Query 999 CCTTCGGAtttttattttatttatatatatatatataAATAATTTAATACGAGAGATATG 1058
|||||||||||| ||| ||||||| |||||||||||| |||||||||||| |||||||||
Sbjct 1123 CCTTCGGATTTTAATTCTATTTATTTATATATATATATATAATTTAATACTAGAGATATG 1182
Query 1059 AAGAGTCACATTT-GACGTTTTATACTCCAA-TATTATTTTACT-TTTGTATGTCGAGTT 1115
||||||||||||| |||||||||||||| || |||||||||| | |||||||||||||||
Sbjct 1183 AAGAGTCACATTTTGACGTTTTATACTCTAAATATTATTTTA-TATTTGTATGTCGAGTT 1241
Query 1116 ATGTCCAACAGTTTTT--GATTCTTGAGATATATATTGATGTACGATCATCtttttgata 1173
|||||||||| ||||| |||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1242 ATGTCCAACAATTTTTTTGATTCTTGAGATATATATTGGTGTACGATCATCGTTTTGATA 1301
Query 1174 atggatttgtttattttatttcttttttt-gtttgaattatttgattcgtttaCGTCATA 1232
||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1302 ATGGATTCGTTTATTTTATCTCTTTTTTTTGTTTGAATTATTTGATTCGTTTACGTCATA 1361
Query 1233 CAC 1235
|||
Sbjct 1362 CAC 1364
> AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
chr4:16239363-16241137 REVERSE LENGTH=1347
Length=1347
Score = 327 bits (177), Expect = 1e-88
Identities = 243/275 (88%), Gaps = 4/275 (1%)
Strand=Plus/Plus
Query 681 CTCTAAGGCTCTCAACCTCAACGGCAAGACAAGGGCCAGCCGCGGCGCTGCCACAGATCC 740
||| ||||| ||||||||||| || || ||||| ||||| || || || ||||| |||||
Sbjct 853 CTCAAAGGCCCTCAACCTCAATGGTAAAACAAGAGCCAGTCGTGGTGCAGCCACCGATCC 912
Query 741 TCAAAGCCTTTATGCAAGGAAAAGAAGAGAGAGGATAAACGAGAGGCTAAGGATTTTGCA 800
||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct 913 TCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGGATTAACGAGAGACTAAGGATTTTACA 972
Query 801 ACATCTTGTCCCTAATGGAACAAAGGTAC-ATATTAGCACGATG-TTGGAAGAAGCAGTA 858
| |||| ||||| |||||||||||||| | ||||||| || ||| || || ||||||||
Sbjct 973 AAATCTCGTCCCCAATGGAACAAAGGT-CGATATTAGTACAATGCTT-GAGGAAGCAGTT 1030
Query 859 CAATACGTCAAATTTTTGCAGCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATG 918
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 CATTACGTCAAATTTTTGCAGCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATG 1090
Query 919 TATGCGCCCATTGCTTACAACGGAATGGACATTGG 953
|||||||| ||||||| ||| || |||||||||||
Sbjct 1091 TATGCGCCGATTGCTTTCAATGGGATGGACATTGG 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60692458905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5