BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480366 Length=1235 Score E Sequences producing significant alignments: (Bits) Value AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1197 0.0 AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | ch... 327 1e-88 > AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:6321587-6323397 REVERSE LENGTH=1364 Length=1364 Score = 1197 bits (648), Expect = 0.0 Identities = 723/760 (95%), Gaps = 2/760 (0%) Strand=Plus/Plus Query 1 ATGGAAGCCATGGGAGAATGGAGCACCGGCCTAGGCGGAATTTATACAGAGGAAGCTGAC 60 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 86 ATGGAAGCCATGGGAGAATGGAGCACCGGCCTAGGCGGAATATATACAGAGGAAGCTGAC 145 Query 61 TTTATGAATCAGCTTCTTGCATCCTATGAGCAACCTTGTGGCGGTTCATCTTCAGAGACA 120 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 146 TTTATGAATCAGCTCCTTGCCTCCTATGAGCAACCTTGTGGCGGTTCATCTTCAGAGACA 205 Query 121 ACCGCCACACTCGCGGCCTACCACCACCAGAGTTCTCACTGGAATGGTGGCTTTTGCTTC 180 |||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 206 ACCGCCACACTCACGGCCTACCACCACCAGGGTTCTCAATGGAATGGTGGCTTTTGCTTC 265 Query 181 TCCCAAGAGAGCAGCAGTTACAGTGGTTACTGCACGGTGATGCCACGGCAAGAAGAAGAC 240 || || |||||||| ||||| |||||||||||| ||| ||||||||||||||||||||| Sbjct 266 TCTCAGGAGAGCAGTAGTTATAGTGGTTACTGCGCGGCGATGCCACGGCAAGAAGAAGAT 325 Query 241 AACAATGGGATGGAAGACGCGACAATCAACACGAACTTGTA-CTTAGTTGGTGAAGAGAC 299 |||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 326 AACAATGGGATGGAGGACGCGACAATCAACACGAACTTGTACCTT-GTTGGTGAAGAGAC 384 Query 300 AAGTGAATGTGATGTGACGGAATACTCCGGTAAAAGCATCTTGCCTTTGGAGACTGTCGC 359 |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 385 AAGTGAATGTGATGCGACGGAATACTCCGGTAAAAGCCTCTTGCCTTTGGAGACTGTCGC 444 Query 360 AGAAAACCACGACCATAGTATGCTACAGCCTGAGAACTCCTTGACAAAGACCACTGATGA 419 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 445 AGAAAACCACGACCATAGTATGCTACAGCCTGAGAACTCCTTGACCACGACCACTGATGA 504 Query 420 GAAACTGTTCAACCCATGTGAGAGTTCTAAGAAGAGGACTCGTGCCACATCAACTGATAA 479 |||| ||||||||| |||||||||||| ||||||||||| ||||||||| |||||||||| Sbjct 505 GAAAATGTTCAACCAATGTGAGAGTTCAAAGAAGAGGACGCGTGCCACAACAACTGATAA 564 Query 480 GAATAAGAGAGCCAACAAGGCACGGAGGAGCCAAAAAGGCATAGAGATGAGTGGCGATAA 539 ||| |||||||||||||||||||| |||||||| ||| || |||||||||||||||| || Sbjct 565 GAACAAGAGAGCCAACAAGGCACGAAGGAGCCAGAAATGCGTAGAGATGAGTGGCGAAAA 624 Query 540 TGAAAATATCGGCGAAGAAGAATATACGGAGAAGGCTGTAGGGAAGAGAAAGACCAAACC 599 |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 625 TGAAAATAGCGGCGAAGAAGAATATACGGAGAAGGCTGCGGGGAAGAGAAAGACCAAACC 684 Query 600 ACTTAAGCCGCAAAAGACTTGTTGTTCGGATGACGAATCAAACGGTGGAGACACTTTCTT 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 685 ACTTAAGCCGCAAAAGACTTGTTGTTCGGATGACGAATCAAACGGTGGAGACACTTTCTT 744 Query 660 GTCCAAAGAAGATGGCGAGGACTCTAAGGCTCTCAACCTCAACGGCAAGACAAGGGCCAG 719 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 745 GTCCAAAGAAGATGGCGAGGACTCTAAGGCTCTCAACCTCAACGGCAAGACTAGGGCCAG 804 Query 720 CCGCGGCGCTGCCACAGATCCTCAAAGCCTTTATGCAAGG 759 ||||||||| ||||||||||||||||||||||| |||||| Sbjct 805 CCGCGGCGCGGCCACAGATCCTCAAAGCCTTTACGCAAGG 844 Score = 747 bits (404), Expect = 0.0 Identities = 458/483 (95%), Gaps = 7/483 (1%) Strand=Plus/Plus Query 759 GAAAAGAAGAGAGAGGATAAACGAGAGGCTAAGGATTTTGCAACATCTTGTCCCTAATGG 818 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 883 GAAAAGAAGAGAGAGGATAAACGAGAGGCTAAGGATTTTGCAACATCTCGTCCCTAATGG 942 Query 819 AACAAAGGTACATATTAGCACGATGTTGGAAGAAGCAGTACAATACGTCAAATTTTTGCA 878 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 943 AACAAAGGTTGATATTAGCACGATGTTGGAAGAAGCAGTACAATACGTCAAATTTCTACA 1002 Query 879 GCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATGTATGCGCCCATTGCTTACAA 938 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1003 GCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATGTATGCGCCTATTGCTTACAA 1062 Query 939 CGGAATGGACATTGGCCTTGACCTAAAACTCAATGCACTGACAAGATGATTCAAGAGACA 998 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1063 CGGAATGGACATTGGCCTTGACCTAAAACTCAATGCACTGACCAGATGATTCAAGAGACA 1122 Query 999 CCTTCGGAtttttattttatttatatatatatatataAATAATTTAATACGAGAGATATG 1058 |||||||||||| ||| ||||||| |||||||||||| |||||||||||| ||||||||| Sbjct 1123 CCTTCGGATTTTAATTCTATTTATTTATATATATATATATAATTTAATACTAGAGATATG 1182 Query 1059 AAGAGTCACATTT-GACGTTTTATACTCCAA-TATTATTTTACT-TTTGTATGTCGAGTT 1115 ||||||||||||| |||||||||||||| || |||||||||| | ||||||||||||||| Sbjct 1183 AAGAGTCACATTTTGACGTTTTATACTCTAAATATTATTTTA-TATTTGTATGTCGAGTT 1241 Query 1116 ATGTCCAACAGTTTTT--GATTCTTGAGATATATATTGATGTACGATCATCtttttgata 1173 |||||||||| ||||| |||||||||||||||||||| |||||||||||| |||||||| Sbjct 1242 ATGTCCAACAATTTTTTTGATTCTTGAGATATATATTGGTGTACGATCATCGTTTTGATA 1301 Query 1174 atggatttgtttattttatttcttttttt-gtttgaattatttgattcgtttaCGTCATA 1232 ||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 1302 ATGGATTCGTTTATTTTATCTCTTTTTTTTGTTTGAATTATTTGATTCGTTTACGTCATA 1361 Query 1233 CAC 1235 ||| Sbjct 1362 CAC 1364 > AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr4:16239363-16241137 REVERSE LENGTH=1347 Length=1347 Score = 327 bits (177), Expect = 1e-88 Identities = 243/275 (88%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 681 CTCTAAGGCTCTCAACCTCAACGGCAAGACAAGGGCCAGCCGCGGCGCTGCCACAGATCC 740 ||| ||||| ||||||||||| || || ||||| ||||| || || || ||||| ||||| Sbjct 853 CTCAAAGGCCCTCAACCTCAATGGTAAAACAAGAGCCAGTCGTGGTGCAGCCACCGATCC 912 Query 741 TCAAAGCCTTTATGCAAGGAAAAGAAGAGAGAGGATAAACGAGAGGCTAAGGATTTTGCA 800 ||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 913 TCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGGATTAACGAGAGACTAAGGATTTTACA 972 Query 801 ACATCTTGTCCCTAATGGAACAAAGGTAC-ATATTAGCACGATG-TTGGAAGAAGCAGTA 858 | |||| ||||| |||||||||||||| | ||||||| || ||| || || |||||||| Sbjct 973 AAATCTCGTCCCCAATGGAACAAAGGT-CGATATTAGTACAATGCTT-GAGGAAGCAGTT 1030 Query 859 CAATACGTCAAATTTTTGCAGCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATG 918 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1031 CATTACGTCAAATTTTTGCAGCTCCAAATTAAGTTATTGAGCTCTGATGATCTATGGATG 1090 Query 919 TATGCGCCCATTGCTTACAACGGAATGGACATTGG 953 |||||||| ||||||| ||| || ||||||||||| Sbjct 1091 TATGCGCCGATTGCTTTCAATGGGATGGACATTGG 1125 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60692458905 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5