BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480370
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14830.1 | Symbols: | Regulator of Vps4 activity in the MVB... 1696 0.0
> AT2G14830.1 | Symbols: | Regulator of Vps4 activity in the MVB
pathway protein | chr2:6362524-6365818 FORWARD LENGTH=1365
Length=1365
Score = 1696 bits (918), Expect = 0.0
Identities = 1215/1351 (90%), Gaps = 50/1351 (4%)
Strand=Plus/Plus
Query 19 TCCTCCTCCTCTTCTCCGCCGGAAGAAGTTGCAGATGAAACACAAGACTGGATACTCGGA 78
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 25 TCCTCCTCCTCTTCTCCGCCGAAAGAAGTTGCAGATGAAACACAAGACTGGATACTCGGA 84
Query 79 GCCGGGTCGGGTTGGGTCGAAGCTCGTACATCTTGCGATCACTTGAACACTCTCTCTCCC 138
|||||||||||||||||||||||||||| | |||||||||||||||||||| | ||||||
Sbjct 85 GCCGGGTCGGGTTGGGTCGAAGCTCGTAAAACTTGCGATCACTTGAACACTTTATCTCCC 144
Query 139 GATTTACTTCACTTACCAACTCCTGATACTCCTTG---T---T---------C---A-A- 178
||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 145 GATTTACTTCACTTACCAACTCCTGATACTCCTTGTTCTAGATACAAACGAACAGAACAC 204
Query 179 GA-ACAATGTTTTGTTTTTTGTTCGGATGGAGAAAAACCTCCAAGTGTAAGAGTGTAGTG 237
|| ||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||
Sbjct 205 GATACAATGTTTTGTTTTTTATTCGGATGGCGAAGAACCTCCAAGTGTAAGAGTGTGGTC 264
Query 238 AAACAGCTTCAATGTCGTCTAAAGCTACTCAAGAACAAGAAATACGCCATTTCTTCACAT 297
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 265 AAACAGCTTCAGTGTCGTCTAAACCTACTCAAGAACAAGAAATACGCTATTTCTTCACAT 324
Query 298 TTACGAAACGATATAGCTCAGTTACTACGTATTGGTGAACGAGACCGTGCTCTTCATCGT 357
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 TTACGTAACGACATAGCTCAGTTACTACGTATTGGTGAACGAGACCGTGCTCTTCATCGT 384
Query 358 GCTCAACAACTCTTCCTTGATGAGAG-CTTAATGTCTCTCTACCACTTGTTGCTTCACTT 416
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 385 GCTCAACAACTCTTCCTTGATGAGAATCT-AATGTCTCTCTACCACTTGTTGCTTCACTT 443
Query 417 CTCCGACATTATCCT-CTTCAACCTCTCTTACATTCGAAGACATAGAGACCTTCCTAATG 475
||||||||| ||||| || ||||||||||||||| || |||| ||||||||||||| |||
Sbjct 444 CTCCGACATAATCCTTCT-CAACCTCTCTTACATCCGGAGACGTAGAGACCTTCCTGATG 502
Query 476 GCATCAACGAAGCTGTTTCAACACTTGTCTTTGCCTCTGCTAGATGTGGAGACTTGCCTG 535
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 503 GCATCAATGAAGCTGTTTCAACACTTGTCTTTGCCTCTGCGAGATGTGGAGACTTGCCTG 562
Query 536 AGCTACGAGCCTTGAGGATTCTTTTTGGTGATCGTTATGGGAAACACTTTGTGGACACGG 595
||||||||||||| ||| | |||||||| | ||||||||||| ||||||||||||||||
Sbjct 563 AGCTACGAGCCTTAAGGGTACTTTTTGGCAAGCGTTATGGGAATCACTTTGTGGACACGG 622
Query 596 CTCTTAATCTCCTGCCTTGTAATCGTGTCAACCCTCAGGTTATAGAGAAACTCTCCATAA 655
|||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 623 CTCTTAATCTTCTGCCTGGTAATTGTGTCAACCCTCAGGTTATAGAGAAACTCTCCATAA 682
Query 656 TCACAGTATCGGATGATGCCAAGTCCAAACTATTAGGTGAAATAGCGGAAGAGTACAATC 715
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 683 TCTCAGTATCGGATGATGCCAAGTCCAAACTATTAGGTGAAATAGTGGAAGAGTATAACC 742
Query 716 TTCGTTTAGAAGTTTTGGCGCTCGAATATACTCCAGAATTTCACAAACAGGTAA-AAGAA 774
||||| |||| || ||||| ||||||| ||||| |||||||||||||||||| || ||
Sbjct 743 TTCGTCTAGAGGTGTTGGCAATCGAATACACTCCCGAATTTCACAAACAGGTACTAA-AA 801
Query 775 AGCGAGTATGTAGAAGAAGAGAAAGAAGTCATGGGTACCGATTCTGCTCAGCCGTG-TG- 832
|||||| | | |||||||||||||||||||||| || || ||||||||||||||| ||
Sbjct 802 AGCGAGAAGGCAGAAGAAGAGAAAGAAGTCATGAGTTCCAATTCTGCTCAGCCGTACTGT 861
Query 833 -CATCACAAAAGGCTGATAGCGAAACAGAAGTGTATAAGTTTACTCTCACGGATGCGGAT 891
|||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 862 TCATCACAAAAGGCTGAGAGTGAAGCAGAAGTGTATAAGTTTACTCTCACGGATGCGGAT 921
Query 892 ACAGAGGAAAAACAAGCGCAACAAAGTCGTAGTAAAGCAT-TAAGTGATGAGGATGATTG 950
| ||||||||| |||| ||| |||| | |||| || | | ||| || ||||||||
Sbjct 922 ATAGAGGAAAACCAAGAACAAGAAAG----A--AAAGTATGTGA-TGAGGAAGATGATTG 974
Query 951 CATAGAGGAAGAAGTGGTGgaaaaagatcagagtgtattcagattcatagaga---ctga 1007
|||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||||
Sbjct 975 CATAGAGGAAGAAGTGGTGGAAGAAGATCAGAGTGTATTCAGATTTAGAGAGAGTACTGA 1034
Query 1008 agaagagaaaaaagagagaaagaggtcaaggagaaaatcaagatcatcatcatcatcatc 1067
||| |||| ||||||||||||||||| |||||| ||| |||||||| | | ||||||||
Sbjct 1035 AGATGAGAGAAAAGAGAGAAAGAGGTTAAGGAGGAAACCAAGATCAAC-T--TCATCATC 1091
Query 1068 aagCAGTCCAATCGCGAAAGACATGGAATGTTGGAGGTACTACTACAAGGGAAAGAGAAG 1127
||||||||| |||||||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 1092 AAGCAGTCCTATCGCGAAAGACGTGGATTGTTGGAGGTACTATTACAAGGGAAAGAGAAG 1151
Query 1128 TCGTCAAAAGAAAGAGTGTGGTAAATGTT---ACCATATAGTGTACAACGTGTTTACAAT 1184
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1152 TCGTCAAAGGAAAGAGTGTGGTAAATGTTGTTACCATATAGTGTACAACGTGTTTACAAT 1211
Query 1185 GTTTCCGGATCAAAAGGAAAGCGAAGAAGGCGAAAAAAGTTTGAAGAAAGCTATGCATGT 1244
||| |||||||||||||||||||||||||| |||| |||||| || ||||||||||||||
Sbjct 1212 GTTGCCGGATCAAAAGGAAAGCGAAGAAGGAGAAAGAAGTTTCAAAAAAGCTATGCATGT 1271
Query 1245 TCATCCTAAGCTTCCCGACTATGATCAGATTGTTGCTCACTTTACTGCTCTTAGGaaaca 1304
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1272 TCATCCTAAGCTTCCCGATTATGATCAGATTGTTGCTCACTTCACTGCTCTTAGGAAACA 1331
Query 1305 acaacaacaacaa-aaa--caTATGCGTTCA 1332
|||||||||| || ||| ||||||||||||
Sbjct 1332 ACAACAACAAAAACAAAAGCATATGCGTTCA 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65863115040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5