BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480373
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14850.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1790 0.0
> AT2G14850.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G33890.2);
Has 140 Blast hits to 132 proteins in 17 species: Archae -
0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 133; Viruses
- 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr2:6385872-6387570
FORWARD LENGTH=1349
Length=1349
Score = 1790 bits (969), Expect = 0.0
Identities = 1231/1353 (91%), Gaps = 35/1353 (3%)
Strand=Plus/Plus
Query 1 GAAGAAACACTTCTTCTTCTTCTTCAACaa-aaaaaaaCCCCAATTTCGCGGCTAAATCA 59
||| |||||||||||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct 16 GAAAAAACACTTCTTCTTCTTCTTCAACAACAACAAAA-CCCAATTTCGCGGCTAAATCA 74
Query 60 ATCGCTTCTACT-GTAGGTCTTGGAATTTGAGAGAAGGAGACCAAATATT-G--AGA-AT 114
||||||||| || | |||||||||| ||||||||| |||||| | | || | || |
Sbjct 75 ATCGCTTCTTCTACT-GGTCTTGGAA-TTGAGAGAA-GAGACC-AGT-TTCGCTGGATCT 129
Query 115 TTGGATGAAGCTGGATTTGGA--AATTTTCAGGTGGAAATTTTGTTGGAAGATGGGTTCA 172
||| ||||||||||||||||| || |||||||| ||| |||||||||||||||| |||
Sbjct 130 TTGAATGAAGCTGGATTTGGATTAA-GTTCAGGTGTAAA-TTTGTTGGAAGATGGGGTCA 187
Query 173 GATCAATGTTTTTCGAGATTGAATACACTTGAGATTAAAGCCCTAATTTATCAGAAAATT 232
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 188 GATCAATGTTTTTCGAGATTGAATTCACTTGAGATTAAAGCCCTAATTTATCAGAAAATT 247
Query 233 GGGTATCAGAGAGCTGATACTTACTTCGGTCAGCTCGGTAACTTCCTTACCTCGAGGATA 292
||| ||||||||||||| |||||||||| |||||||| || ||||||||||||||||||
Sbjct 248 GGGCATCAGAGAGCTGACACTTACTTCGACCAGCTCGGAAAATTCCTTACCTCGAGGATA 307
Query 293 AGCAAGTCGGAGTTTGATAAGCTATGTAGCAAGACGGTTGGTAGAGAGAACATTTCTCTA 352
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 AGCAAGTCCGAGTTCGATAAGCTATGTAGCAAGACGGTTGGTAGAGAGAACATTTCTCTA 367
Query 353 CATAACCGTCTAGTACGTTCAATTCTCAAGAATGCAAGTGTTGCTAAATCTCCACCACCG 412
|| |||||||| |||||||| ||||| |||||||||||||||||||| |||||||| |||
Sbjct 368 CACAACCGTCTTGTACGTTCGATTCTGAAGAATGCAAGTGTTGCTAAGTCTCCACCGCCG 427
Query 413 AGATATCCGAAGAAATCTCTTTATGGGGATTCTGCGTTCCCTCCTTCGCCGAGGAAATGC 472
|| |||||||||||||||||||| |||||| | | ||| |||||||||||||||||||||
Sbjct 428 AGGTATCCGAAGAAATCTCTTTACGGGGATCCCGTGTTTCCTCCTTCGCCGAGGAAATGC 487
Query 473 AGGTCGAGGAAATTTAGAGATCGGCCTAGTCCGCTTGGTCCGCTTGGGAAGCCTCAGAGT 532
||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| |||
Sbjct 488 AGGTCGAGGAAGTTTAGAGACCGGCCTAGTCCTCTTGGTCCACTTGGGAAGCCTCAAAGT 547
Query 533 CTCACTACTACGAATGATGAGTCAATGTCAAAGGCACAAAGACTTCCAATGGAAGTTGTC 592
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 548 CTCACTACTACGAATGATGAGTCAATGTCAAAGGCTCAAAGACTTCCTATGGAAGTTGTC 607
Query 593 TCTGTGGAAGAAGGAGAAGAAGTTGAGCAAATGACGGGAAGTCCGAGTGTGCAGAGCAGA 652
||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 608 TCTGTTGAAGATGGAGAAGAAGTTGAGCAAATGACGGGTAGTCCGAGTGTGCAAAGCAGA 667
Query 653 AGCCCCTTAACCGCTCCACTTGGTGTTTCTATCCATCTTAAGAGCAGAGCTAGAAAGTCT 712
|||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| | |
Sbjct 668 AGCCCCTTAACCGCTCCACTCGGTGTTTCTTTCCATCTTAAGAGCAAAGCTAGAT--T-T 724
Query 713 AGTTTCAGTTCATACAATGGTATCAACCGTGAGACGTGTCAAAGCAGCGGCGAGCTACCT 772
||| | || | |||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 725 AGTA-C-GT--A--CAATGGTATCAACCGTGAGACGTGTCAAAGCAGCGGGGAGTTACCT 778
Query 773 GATACAATAACGAT-GAGAGCTCGGTTGGTGAGGAAATTGGAGATGGAAGGGATAAAGTT 831
|||| ||||| || |||||||||||| | || |||||||||||||||||||||||||||
Sbjct 779 GATATGATAAC-ATTGAGAGCTCGGTTAGAGAAGAAATTGGAGATGGAAGGGATAAAGTT 837
Query 832 ATCTATGGACTCTGCTAATCTTCTTAATAGTGGATTGAATGCATATATGAGAAGGCTGAT 891
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 838 ATCTATGGACTCTGCTAATCTTCTTAATCGTGGGTTGAATGCATATATGAGAAGGCTGAT 897
Query 892 CGAGCCTTGTTTGAGTTTAGCCAGTCAACAAAAGCGAGCGGTATCTAATGTATCAATTTT 951
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||
Sbjct 898 CGAGCCTTGTTTGAGTTTAGCAAGTCAACAAAAGCGAGCGGTGTCTAATGTATCGATGTT 957
Query 952 GGATTTCCGTGCTGCAATGGAG-TTGAATCCCCGGGTTCTTGGAGAGGAATGGCCTATAC 1010
|||||||| ||| || |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 958 GGATTTCCATGCCGCCATGGAGGTT-AATCCCCGGGTTCTTGGAGAGGAATGGCCTATAC 1016
Query 1011 ATCTAGAGAAGATATGTTACCGTGCTTCCGAAGAGTAAAGTTGTAGAAAAA-CGCCGTAA 1069
| ||||| ||||| |||| ||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1017 AGCTAGAAAAGATCTGTTGCCGTGCTTCTGAAGAGTAAAGTTGTAGAAAAAACGCCGTAA 1076
Query 1070 TTTAGCAATACACCGAT-ATCGTATTTGATTGACAGATTTTATACCTGTACCTGAGATTC 1128
|||||| |||||||||| ||| |||||||||||||||||| | ||| | ||||||||||
Sbjct 1077 TTTAGCGATACACCGATTATCATATTTGATTGACAGATTTGGTTCCTTTGCCTGAGATTC 1136
Query 1129 TTTCCTT-GGATTTGCGTGGAATTGCAATTAGAGATTTCTTGAGGAAGCTTTGAA-GGGA 1186
||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1137 TTTCCTTTGGATTTGAGTGGAATTGCAATTAGAAATTTCTTGAGGAAGCTTTGAATGGGA 1196
Query 1187 AACAAAGATTCTTGGGGTTGTACAAGTTCTGATAGATATAATATAGTTTAAATACCCATT 1246
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1197 AACAAAGGTTCTTGGGATTGTACAAGTTCTGATAGATATAATATAGTTTAAATACC-ATT 1255
Query 1247 TGTTTAGCAGATATCTGCACtttttttCTGTATTTTTTCCTCATGTCTAATGTAACAAAT 1306
||||||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1256 TGTTTAGGTGATATCTTTACTTTTTT-CTGTATTTTTTCCTCACGTCTAATGTAACAAAT 1314
Query 1307 TTTCCATTAAAGCAAAAGAAAATTTTAGCAGTT 1339
||||||| ||||||||||||| |||||||||||
Sbjct 1315 TTTCCATGAAAGCAAAAGAAAGTTTTAGCAGTT 1347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65913315585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5