BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480374
Length=977
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14860.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PM... 1360 0.0
AT4G33905.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PM... 496 2e-139
> AT2G14860.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
family protein | chr2:6387624-6389628 REVERSE LENGTH=1020
Length=1020
Score = 1360 bits (736), Expect = 0.0
Identities = 915/997 (92%), Gaps = 29/997 (3%)
Strand=Plus/Plus
Query 1 AGTCATCATCAAAGCTTCCTAATACCTGaacaacaacaacaacaacCCCTAAAATCTCGG 60
||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||
Sbjct 1 AGTCATCATCAAAGCTTTCTGATACCTG---AACAACAACAACAACCCCTAAAATCTCGG 57
Query 61 AAGCCAGAATGAGCAGAGCATTGTTCAGGCACGTGGCCGTCGACACCGCCCGGCTCATAC 120
|||||| |||||||||||||||||||||| |||| |||||||||||||| ||||||||||
Sbjct 58 AAGCCATAATGAGCAGAGCATTGTTCAGGAACGTAGCCGTCGACACCGCTCGGCTCATAC 117
Query 121 GGAGGAACACGGCGGCGTCAACAGACCGGTATGGTAAGACCGGAGTTGCTCAATCGAGAC 180
|| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 118 GGCGGAACGCGGCGGCGTCAACAGACCAATATGGTAAGACCGGAGTTGCTCAATCGAGAC 177
Query 181 CTTA-TT----T--C--C-G------G--AGAGCAAAAGAAACAGGAGTCTCACCTTCTC 222
|||| || | | | | | |||||||||||||||||||||||||||||||
Sbjct 178 CTTATTTCCGGTCACGTCAGCTTCTCGAAAGAGCAAAAGAAACAGGAGTCTCACCTTCTC 237
Query 223 CTTCTTTGGGTTTCTCTTCTTCTTCATCTGCGTCGATTTCGAAAGTTGGGTTCCTTGGAT 282
||||||||||||||||||||||||||||| |||||| | | |||||||| ||||||
Sbjct 238 CTTCTTTGGGTTTCTCTTCTTCTTCATCTCCGTCGA----G-GA-TTGGGTTCGTTGGAT 291
Query 283 GGTATCTTGGTATGGTTAAATCACGCCCAGTTGTGACCAAAAGTATCACTTGCTCTCTTA 342
|||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||
Sbjct 292 GGTATCTTGGTATGGTTAAATCACACCCAGTTGTGACCAAAAGTGTCACTTCCTCTCTTA 351
Query 343 TTTACATTGCCGCCGACTTGTCTTCTCAGACAATTTCGAAAACTTCCTCTGAGTCATATG 402
||||||||||||||||||||||||||||||| ||| |||||||||| |||||||| ||||
Sbjct 352 TTTACATTGCCGCCGACTTGTCTTCTCAGACGATTGCGAAAACTTCTTCTGAGTCTTATG 411
Query 403 ACTTGGTGAGAACAGCAAGGATGGGAGGATATGGTTTATTTGTCTTGGGTCCAACACTTC 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 ACTTGGTGAGAACAGCAAGGATGGGAGGATATGGTTTATTTGTCTTGGGTCCAACACTTC 471
Query 463 ACTATTGGTTCAATTTCATGTCAAGACTCTTTCCTAAACAAGATTTGATCACAACGTTTA 522
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 ACTACTGGTTCAATTTCATGTCAAGACTCTTTCCTAAACAAGATTTGATCACAACGTTTA 531
Query 523 AGAAAATGGCTATGGGACAGGCGATCTACGGGCCTACCATGACCGTTATTTTCTTCTCAT 582
|||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||
Sbjct 532 AGAAAATGGCTATGGGACAGACGATCTACGGGCCTATTATGACTGTTATTTTCTTCTCAT 591
Query 583 TAAACGCATCCCTACAAGGGGAAAGCGGTTCAGATATACTTGCCAGATTGAAAAGGGACT 642
| || |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 592 TGAATGCATCCCTACAAGGGGAACGCGGTTCAGTTATACTTGCCAGATTGAAAAGGGACT 651
Query 643 TACTCCCTGCGATGTTTAACGGTGTCATGTATTGGCCTCTATGTGATTTTATAACATTCA 702
||||||| ||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 652 TACTCCCCGCGCTCTTTAACGGTGTCATGTATTGGCCTCTATGTGATTTTATCACATTCA 711
Query 703 GATTCTTCCCTGTTCATTTACAGCCTCTTGTAAGCAACTCGTTTTCGTATGTATGGACAA 762
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 712 GATTCTTCCCTGTTCATTTACAGCCTCTTGTAAGCAACTCATTTTCGTATGTATGGACTA 771
Query 763 TCTACATGACTTACATGGCAAACCGTGAAAAACCAGTCGCAATTTCAAGCTGAAACACTC 822
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 772 TCTACATGACTTACATGGCAAACCGTGAAAAACCAGTCGCAATTTCAACCTGAAACACTC 831
Query 823 ACTTATTTTCAACATCGTCTCGAGCATTGCCTCCCTTAGTGCTCAGTTTTCGCTGCATCA 882
|| ||| ||| |||||| |||| ||| ||||||||||||||||||||| |||| |||||
Sbjct 832 ACATATCTTCTACATCGACTCGGGCAATGCCTCCCTTAGTGCTCAGTTATCGCCACATCA 891
Query 883 ACCTGCAATTAGCATTCTTCAAGAG-ATTTTGTACTGTCTGTAGAATTAGGTTGGTA-AA 940
| ||||||| |||||||||||| | ||| |||||||||||||||||||||||| || ||
Sbjct 892 AACTGCAATGAGCATTCTTCAAAATTATTCTGTACTGTCTGTAGAATTAGGTTGTTACAA 951
Query 941 TGTAAGAGCTTGGAAGAACTAGTCATGTCAGACATGT 977
|||||||||||||||||||| |||||||||||||||
Sbjct 952 TGTAAGAGCTTGGAAGAACTTCTCATGTCAGACATGT 988
> AT4G33905.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
family protein | chr4:16253815-16255612 REVERSE LENGTH=1056
Length=1056
Score = 496 bits (268), Expect = 2e-139
Identities = 437/518 (84%), Gaps = 14/518 (3%)
Strand=Plus/Plus
Query 279 GGATGGTATCTT-GGTATGGTTAAATCACGCCCAGTTGTGACCAAAAGTATCACTTGCTC 337
||||||||| || || ||||| ||||| || || ||| | |||||| |||| | |||
Sbjct 270 GGATGGTAT-TTGGGAATGGTGAAATCTCGGCCGGTTCTTACCAAATCCGTCACGTCCTC 328
Query 338 TCTTATTTACATTGCCGCCGACTTGTCTTCTCAGACAATTTCGA-AAACTTCCTCT-GAG 395
||||||||||| || ||||| |||||||| ||||||| ||| | || ||| | | ||
Sbjct 329 GCTTATTTACATAGCAGCCGATTTGTCTTCGCAGACAA-TTCCACAAGCTT-CAGTGGAT 386
Query 396 TCATATGACTTGGTGAGAACAGCAAGGATGGGAGGATATGGTTTATTTGTCTTGGGTCCA 455
|| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 387 TCTTATGACTTGGTAAGAACAGCAAGGATGGGAGGATATGGGTTATTAATCTTGGGTCCT 446
Query 456 ACACTTCACTATTGGTTCAATTTCATGTCAAGACTCTTTCCTAAACAAGATTTGATCACA 515
||||||||||||||||||||| |||||||||| ||||| || |||| |||||||||||||
Sbjct 447 ACACTTCACTATTGGTTCAATCTCATGTCAAGTCTCTTCCCAAAACGAGATTTGATCACA 506
Query 516 ACGTTTAAGAAAATGGCTATGGGACAGGC-GATCTACGGGCCTACCATGACCGTTATTTT 574
||||||||||||||||| ||||||||| | | |||| |||||| |||||| ||| ||||
Sbjct 507 ACGTTTAAGAAAATGGCCATGGGACAGACAG-TCTATGGGCCTGCCATGAATGTTGTTTT 565
Query 575 CTTCTCATTAAACGCATCCCTACAAGGG-GAAAGCGGTTCAGATATACTTGCCAGATTGA 633
||||||| | || ||| ||||||| ||| |||| |||||||| ||| |||| |||||||
Sbjct 566 CTTCTCACTGAATGCAGCCCTACA-GGGTGAAAATGGTTCAGAGATAGTTGCTAGATTGA 624
Query 634 AAAGGGACTTACT-CCCTGCGATGTTTAACGGTGTCATGTATTGGCCTCTATGTGATTTT 692
|||||||| |||| ||| | ||| |||| |||||||||||||||||| | |||||||||
Sbjct 625 AAAGGGACCTACTTCCCA-CAATGCTTAATGGTGTCATGTATTGGCCTTTGTGTGATTTT 683
Query 693 ATAACATTCA-GATTCTTCCCTGTTCATTTACAGCCTCTTGTAAGCAACTCGTTTTCGTA 751
|| || |||| | |||| ||||||| |||||||||| ||||| |||||||||||||||||
Sbjct 684 ATTACTTTCAAG-TTCTGCCCTGTTTATTTACAGCCACTTGTGAGCAACTCGTTTTCGTA 742
Query 752 TGTATGGACAATCTACATGACTTACATGGCAAACCGTG 789
| |||||||||||||||| ||||| ||||||| |||||
Sbjct 743 TCTATGGACAATCTACATAACTTATATGGCAAGCCGTG 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47822907944
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5