BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480375
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14890.1 | Symbols: AGP9 | arabinogalactan protein 9 | chr2:... 1195 0.0
> AT2G14890.1 | Symbols: AGP9 | arabinogalactan protein 9 | chr2:6399621-6401059
FORWARD LENGTH=938
Length=938
Score = 1195 bits (647), Expect = 0.0
Identities = 780/840 (93%), Gaps = 26/840 (3%)
Strand=Plus/Plus
Query 1 ACATTTCCTCACTCAACTCTCTCATTCTCACTAACAGAGAG--aaa--aaaagcaaaaaT 56
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1 ACATTTCCTCACTCAACTCTCTCATTCTCACTAACAGAGAGAAAAAGCAAAAGCAAAAAT 60
Query 57 GGCTCGATCTTTCGCTATCGCTGTGATCTGTATCGTTCTCGTCGCCGGCGTTACTGGTCA 116
|||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||
Sbjct 61 GGCTCGATCTTTCGCTATTGCTGTGATCTGTATCGTCCTCATCGCCGGCGTTACTGGTCA 120
Query 117 AGCTCCGACTTCACCACCAACCGCTACACCAGCTCCACCAACTCCAACAActcctccacc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCTCCGACTTCACCACCAACCGCTACACCAGCTCCACCAACTCCAACAACTCCTCCACC 180
Query 177 agcagctactcctcctccagtctcagcaccacctccagtcacaacctctcctcctccggt 236
|||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 181 AGCAGCAACTCCTCCTCCTGTCTCAGCACCACCACCAGTCACAACATCTCCTCCTCCAGT 240
Query 237 caccac--c-gctcctccAGCAAACCCACCGCCACCAGcctcatctcctcctcctgcttc 293
|||||| | ||||||||||||| ||||| ||||||| ||| |||||||||||||||||
Sbjct 241 CACCACTGCTCCTCCTCCAGCAAATCCACCACCACCAGTCTCTTCTCCTCCTCCTGCTTC 300
Query 294 tcctccaccagctactcctcctccagtcgcttctcctcctcctcccg-t-c-gct--t-- 346
||||||||||||||||||||||||||||||||||||||||||||||| | | || |
Sbjct 301 TCCTCCACCAGCTACTCCTCCTCCAGTCGCTTCTCCTCCTCCTCCCGTTGCTTCTCCTCC 360
Query 347 --------ctcctcctcccgtcgcaactcctccaccagctcctcTAGCTTCACCTCCAGC 398
|||||||||||||||| |||||||| ||||||||||||||||| ||||| ||
Sbjct 361 ACCAGCAACTCCTCCTCCCGTCGCTACTCCTCCCCCAGCTCCTCTAGCTTCCCCTCCTGC 420
Query 399 TCAAGTTCCGGCTCCAGCACCGACCAAGAAGCCAGATTCTCCATCTCCATCGCCGTCTTC 458
||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| ||
Sbjct 421 TCAAGTTCCAGCTCCAGCACCGACCACGAAGCCAGATTCTCCATCTCCATCTCCGTCATC 480
Query 459 TAGCCCACCTATTCCATCGAGCGACGCTCCTGGACCTAGCACCGATTCTATCTCTCCTGC 518
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TAGCCCACCTCTTCCATCAAGCGACGCTCCTGGACCTAGCACCGATTCTATCTCTCCTGC 540
Query 519 TCCTAGCCCCACCGGTGTGAACGACCAGAATGGAGCTAGCAAGATGGTTTCGAGCTTAGT 578
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCCTAGCCCCACTGATGTGAACGACCAGAATGGAGCTAGCAAGATGGTTTCGAGCTTAGT 600
Query 579 ACTTGGATCTGTTCTCGGT-TGGTTTATGATCTAAGTGTCGTCTTTTGT-ACCGGTGTTA 636
| |||||||||||||| || |||||||||||||||||| |||||||| | | ||||||
Sbjct 601 ATTTGGATCTGTTCTC-GTCTGGTTTATGATCTAAGTGGAATCTTTTGTGA-CTGTGTTA 658
Query 637 CTTGCATTTATTATTATGTCGTCTTTGTTTGTTCCACTGTATTGCTTGGGACTGAATTCT 696
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTTGCATTTATTTTTATGTCGTCTTTGTTTGTTCCACTGTATTGCTTGGGACTGAATTCT 718
Query 697 TTTGGGATTTATTATCTTTCGGAGAGGATACTATTGAGAGCTTGAGATGGAGATAGCAGG 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTTGGGATTTATTATCTTTCGGAGAGGATACTATTGAGAGCTTGAGATGGAGATAGCAGG 778
Query 757 ATATTTTGTTTGCAGATACTTTTGTGGCTTCCTTTCTCATTCCATTTGATTATTAGTGTA 816
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 779 ATATTTTGATTGCAGATACTTTTGTGGCTTCATTTCTCATTCCATTTGATTATTAGTGTA 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5