BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480378
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14910.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 2316 0.0
> AT2G14910.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING:
15 growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G14970.1); Has 605 Blast hits to
425 proteins in 102 species: Archae - 0; Bacteria - 300; Metazoa
- 25; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes
- 191 (source: NCBI BLink). | chr2:6406476-6409152 REVERSE
LENGTH=1779
Length=1779
Score = 2316 bits (1254), Expect = 0.0
Identities = 1440/1528 (94%), Gaps = 19/1528 (1%)
Strand=Plus/Plus
Query 31 TAGGGTTTGTTTGTCACTaagaggaagagaaagaagaagaaga-aAATTTCGTACAATTC 89
||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 55 TAGGGTTTGTTTGAGACTAAGAGGAAGAGAAAGAAGAAGAAGAGAAAATTCGTACAATTC 114
Query 90 CGCCATTAAAGCTTCCAA-CTTTAATGGCGACAACGACAATTtcttccttctctctttct 148
|||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 115 CGCCATTAAAGCTT-CAACCTTTAATGGCGACAACGACTCTTTCTTCCTTCTCTCTTTCT 173
Query 149 cttcctcaacttctccgtaaacccacaaagcctcttcctttcctcttccttcttcCTCGA 208
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 CTTCCTCAACTTCTCCATAAACCCACAAAGCCTCTTCCTTTCCTCTTCCTTCTTCCTCGA 233
Query 209 CTCAATCGAAGATTTCGAAGTCTCACTATCACTTCTTC-T-T-CAA-----GC-AAC--- 256
||||||| ||||||||||||||||||||||||||||| | | ||| | |||
Sbjct 234 TTCAATCGGAGATTTCGAAGTCTCACTATCACTTCTTCTTCTACAACTTCTTCAAACAAT 293
Query 257 TTCAGTAGTAATTGTGGCGATGATGGCTTCTCTCTCGACGATTTCACTCTTCATTCTGAT 316
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 294 TTCAGTAGTAATTGTGGCGATGATGGCTTCTCTCTTGACGATTTCACTCTCCATTCTGAT 353
Query 317 TCTCGATCACCTAAAAAATGTGTCCTTTCTGATCTTATTCAAGAGATTGAACCATTAGAT 376
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 354 TCTCGATCACCTAAAAAATGTGTCCTTTCTGATCTTATACAAGAGATTGAGCCATTAGAT 413
Query 377 GTGAGTTTGATTCAGAAGGATGTTCCAGTGACTACTTTGGATGCTATGAAAAGAACAATC 436
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 414 GTGAGTTTGATTCAGAAGGATGTTCCAGTTACTACTTTGGATGCAATGAAAAGAACAATC 473
Query 437 TCGGGGATGTTAGGG-CTTCTTCCATCTGATAGGTTTCAGGTTCATATTGAATCTCTTTG 495
|| || ||||| ||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 474 TCAGGCATGTT-GGGTCTTCTTCCATCTGATAGGTTTCAGGTTCATATTGAGTCACTTTG 532
Query 496 GGAACCTTTGTCTAAGCTTTTGGTATCTTCAATGATGACTGGGTATACATTGAGGAATGC 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GGAACCTTTGTCTAAGCTTTTGGTATCTTCAATGATGACTGGGTATACATTGAGGAATGC 592
Query 556 TGAATATCGGCTTTTTCTTGaaaaaaaTCTTGATATGAGTGG-GGAAGACTTGGAAAGCC 614
||||||||||||||||||||||||||| |||||||||||||| ||| | |||||| ||||
Sbjct 593 TGAATATCGGCTTTTTCTTGAAAAAAACCTTGATATGAGTGGTGGAGG-CTTGGACAGCC 651
Query 615 GCACTTCGGAAAATACTGAATACGATTTGGAAGGGATGTTGACTGATGAAGATAATGTTT 674
| |||||||||| |||||||| ||| ||||||||| ||| ||||||||||| ||||||
Sbjct 652 ACGCTTCGGAAAACACTGAATATGATATGGAAGGGACGTTTCCTGATGAAGATCATGTTT 711
Query 675 CATCCAAAAGGGATAGCATAACTCAGAGCCTTTCTGAAACGATTGATGAAGAAGGTTTGG 734
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 712 CATCCAAAAGGGATAGCAGAACTCAGAACCTTTCTGAAACGATTGATGAAGAAGGTTTGG 771
Query 735 GCAGAGTATCCTCTGAAGCTCAAGAATATATCTTTCGTTTGCAGTCACAATTGGCTTCTG 794
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 772 GCAGAGTATCCTCTGAAGCTCAAGAATATATCTTACGTTTGCAGTCACAATTGTCTTCTG 831
Query 795 TGAAAAAGGAATTACAAGAAATGAGGCGAAAGAACGCTGCCCTACAAATGCAACAATTTG 854
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 832 TGAAAAAGGAATTACAAGAAATGAGACGAAAGAACGCTGCCCTACAAATGCAACAATTTG 891
Query 855 TTGGCGAAGAGAAGAATGATTTGTTGGACTATTTAAGATCTTTGCAACCTGAGAAGGTAG 914
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 892 TTGGCGAAGAGAAGAATGATTTGTTGGACTATTTACGATCTTTGCAACCTGAGAAGGTAG 951
Query 915 CTGAGTTGTCGGAACCTGCGGCTCCTGAGGTTAAAGAGACAATTCATTCTGTTGTTCACG 974
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 952 CTGAGTTGTCAGAACCTGCGGCTCCTGAGGTGAAAGAGACTATTCATTCTGTTGTTCACG 1011
Query 975 GTCTTTTGGCAACTCTATCACCGAAGATGCACTCCAAGTTTCCAGCATCAGAAGTGCCAC 1034
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1012 GTCTTTTGGCAACTCTATCACCGAAGATGCACTCTAAGTTTCCAGCATCAGAAGTTCCAC 1071
Query 1035 CTACTGAAACGGTGAAAGCAAACAGTGATGAAGATTGTGCTGAACTTGTAGAGAACACCT 1094
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1072 CTACTGAAACGGTGAAAGCAAAAAGTGATGAAGATTGTGCTGAACTTGTAGAGAACACTT 1131
Query 1095 CATTGCAGTTTCAGCCTCTTATCTCACTGACTCGAGACTACCTTGCTCGTCTTCTCTTCT 1154
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 CGTTGCAGTTTCAGCCTCTTATCTCACTGACTCGAGACTACCTTGCTCGTCTTCTCTTCT 1191
Query 1155 GGTCCATGCTATTGGGACATTACCTCAGAGGTTTGGAATATCGAATGGAACTGATGGAGG 1214
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1192 GGTGCATGCTATTGGGACATTATCTCAGAGGTTTGGAATATCGAATGGAACTGATGGAGG 1251
Query 1215 TCCTGTCTTTGACGTGTGATGCCAATGGGTCTGAGAACGTTGCTTGAAGCTATCTTTACA 1274
||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1252 TCCTGTCTTTGACATGCGATGCCAATGGGTCTGAGAACGTCGCTTGAAGCTATCTTTATA 1311
Query 1275 TATCTCAACGTTGTCTTACATGCGTATCACCGGCCTTGACATTCTTAAACCAACAAAGTG 1334
|||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1312 CATCTCAACATTGTCTTACATGCGTATCAGCGGCCTTGACACTCTTAAACCAACAAAGTG 1371
Query 1335 AGCAAGTGACTAAGAGAAAGGCCAGCTTTTGAGCTTTAGCTCCTGCAGATACATGCAACT 1394
||||||||||| |||| |||||||| ||||||||||||||| |||| ||| ||||| ||
Sbjct 1372 GGCAAGTGACTAGGAGACAGGCCAGCCTTTGAGCTTTAGCTCTTGCACATATATGCAGCT 1431
Query 1395 TGGTGCTGGCCTGAAAATTCATGTGCGAGGTAAAGTGTAACATAAGAAATCACTTCTGCT 1454
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1432 TTGTGCTGGCCTGAAAATTCATGGGCGAGGTAAAGTGTAACATAAGAAATCACTTCTACT 1491
Query 1455 AAAATTATTTTCCGTTGCATTATCGTGTGATGGACCTGCAAAGCAATAAAGCTAAGTGTA 1514
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1492 AAAATTATTTTTCGTTGCATTATCGTGTGATGGATCTGCAAAGCAATAAAGCTAAGTGTA 1551
Query 1515 ATTGTATTCAGGAATATACTCATTTGGT 1542
||||||||||||||||||||| ||||||
Sbjct 1552 ATTGTATTCAGGAATATACTCGTTTGGT 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76104026220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5