BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480380
Length=638
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15000.4 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 876 0.0
> AT2G15000.4 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G34265.2);
Has 80 Blast hits to 80 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:6480923-6482420
REVERSE LENGTH=706
Length=706
Score = 876 bits (474), Expect = 0.0
Identities = 559/600 (93%), Gaps = 6/600 (1%)
Strand=Plus/Plus
Query 45 CTCGCTCTCTCTCAATTCAC--GT-CTCCTTCAATGGCTTGGCGCAACGCAGGATCTGCT 101
||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 72 CTCTCTCTCTCTCAATTCACTTCTCCTCCTTCAATGGCTTGGCGCAACGCAGGATCTGCC 131
Query 102 GCTCGTTCTTTCGTCTCCGCCACCGCTAGATCACCGTCTCTCCGTTCTCCGACGACGGCC 161
|||||||||||||||||||||||||| |||||||| |||||||||||||| || |||||
Sbjct 132 GCTCGTTCTTTCGTCTCCGCCACCGCAAGATCACCATCTCTCCGTTCTCCCACCACGGCG 191
Query 162 CTTCCTCGCCTCCGTCCTCCTCAATCCTCCTTACCTGGCCGTCGCTTCACCTTCTCATCA 221
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 192 CTTCCTCGCCTCCGTCCTCCTCAATCCTCCTTACCTAGCCGTCGCTTCACCTTCTCATCA 251
Query 222 CCTTCTAGGAATCTAGGAGCACTTGGTTGCACACAGTCGTTCTTGCCTCTGTACAGTGTT 281
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 CCTTCCAGGAATCTAGGAGCACTTGGTTGCACACAGTCGTTCTTGCCTCTGTACAGTGTT 311
Query 282 GTGGCTGCTTCTCAACTCACATCTCACCTTAACGTTAATTTGCGGGCTTTCTGCGAGCTG 341
|||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 312 GTGGCTACTTCTCAACTCACATCTCACCTTAACGTTAACTTGCGAGCTTTCTGCGAGCTG 371
Query 342 TCTAACGGTACCTTCCAACGCACTTGTCCGGATCGCTAGTAGTCTTCTTTGTACTTGAAG 401
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 372 TCTAACGGTACCTTCCAACGCACTTGTCAAGATCGCTAGTAGTCCTCTTTGTACTTGAAG 431
Query 402 AGGCAAAAGAGTGTCTTTTCACCGTGCATGCGTGAATCAGTACTTTGAATGGATGTGAGA 461
|||||||||||||| |||||| | |||||||||||||||||||||||| ||||||||||
Sbjct 432 AGGCAAAAGAGTGTAATTTCACTGCGCATGCGTGAATCAGTACTTTGAAGGGATGTGAGA 491
Query 462 TCGAAATTGTGGGGTTACCTCAGCAAAAACTTGTTTGTTGTGTTGC-TTTTTTAGAAGTT 520
||||||||||||| ||||||||||||||||||| || ||||||||| |||||||||||||
Sbjct 492 TCGAAATTGTGGGATTACCTCAGCAAAAACTTGCTTATTGTGTTGCCTTTTTTAGAAGTT 551
Query 521 TTAGTTCCACAATGTGTGGATT-ATTAGTTATAGATCTTTTCGTTTGCTTGGCACAATG- 578
|||||| ||||||||||||||| ||||||| |||| |||||||| ||||||||||||||
Sbjct 552 TTAGTTTCACAATGTGTGGATTTATTAGTTGTAGAGCTTTTCGTATGCTTGGCACAATGG 611
Query 579 TTTTTTCTCAGAGAACAGTTTTTTGTTTCCGAAAAATGAATAACAGCATTAATAAGTGTA 638
|||||||||||||||| |||||||||| || ||||| ||| |||||||||||||||||
Sbjct 612 TTTTTTCTCAGAGAACCTTTTTTTGTTTTGGAGAAATGCATAGCAGCATTAATAAGTGTA 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30793532111
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5