BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480385
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15020.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2523 0.0
> AT2G15020.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G64190.1);
Has 72 Blast hits to 72 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:6491434-6493352
REVERSE LENGTH=1919
Length=1919
Score = 2523 bits (1366), Expect = 0.0
Identities = 1546/1634 (95%), Gaps = 7/1634 (0%)
Strand=Plus/Plus
Query 1 AAACACACATTTTCCTT--aaaaa-aaa-TAA-ACCAAGAAAATGGACCCTTGGTCATGG 55
||||||||||||||||| ||||| ||| || |||||||||||||||| |||||||||
Sbjct 25 AAACACACATTTTCCTTAGAAAAATAAACCAAGTCCAAGAAAATGGACCCATGGTCATGG 84
Query 56 ATATGCGACCTTCCCGAAGCTCCCGAGTTCAGCGAGTCTGATTCACACGCAGTGTTTCAG 115
||||| || ||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 85 ATATGTGAGCTTCCAGAAGATCCTGAGTTCAGCGAGTCTGATTCACACGCAGTGTTTCAG 144
Query 116 CTCGCAGGCGATTTGACACGTTCGATCAAACTTAGAGCCGAAAGGGCTTCGGGTTCTGAC 175
||||| |||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 145 CTCGCTGGCGATTTGACACGTTCGATCAAACTTAGAGCCGAACGGACTTTGGGTTCTGAC 204
Query 176 CTAGAATCTCAGTCTCTCACCTTCAAAGTGGTAGCAGAGGGTTTTAACCTCCTTAAGTCG 235
| ||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 205 CAAGAATCTCACTCTCTCACCTTTACAGTTGTAGCAGAGGGTTTTAACCTCCTTAAGTCG 264
Query 236 TCGACCATTTGGGTCTCGGACACATGTCCCTTGTCGTCGGAGAAACCGTTCCTCCCTCTT 295
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 265 TCGACCATTTGGGTCTCCAACACATGTCCCTTGTCGTCGGAGAAACCGTTCCTCCCTCTT 324
Query 296 GTTCTCCAGCTTCTTCAAGAACTAATCACCCATTCCCCTACCTCACGCGACGGCGCGTGC 355
||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||
Sbjct 325 GTTCTCCAGCTTCTTCAAGAACTAATCACCCGTTCCCCTACCACACACGACGGCGCGTGC 384
Query 356 ACAAAGTTTGAACAACTTGAAATCAAACCAGGTCCGGTTAGCTGGGTCATGGACTCTCAC 415
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 385 ACAAAGTTTGAACAACTTGAAATCAAACCAAGTCCAGTTAGCTGGGTCATGGACTCTCAC 444
Query 416 TCACCTGAATCCTTCTCATCAGTCTTTAATCTAATCCTCCTCACGCGCCTCTTCTGGTTG 475
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 445 TCACCTGAATCCTTCTCATCAGTCTTTAATCTAATCCTCCTCACACGCCTCTTCTGGTTG 504
Query 476 TGTGTATTTGACGCGCCTAGCGAAGTAGGCTCTTTCTTCTTCCAACATC-TACTAGGTCC 534
||||| ||||||||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct 505 TGTGTGTTTGACGCGCCAAGCGAAGTAGGCTCTTTCTTCTTCCAACA-CTTACTAGGTCC 563
Query 535 ACACGTGAACGCGCTTACATGTCAACACGCACCTGTGTTACGAACGTTTCTCGTCTCACT 594
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||
Sbjct 564 ACACGTGAACGCGCTTACATGTCAACATGCACCTGTCTTACGGACGTTTCTCGTCTCTCT 623
Query 595 TGGTGTAGACGCCGAGCTGTGTATTGTACGAGCCGCTTCTTACGCCTTATCCAAATGGAT 654
||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||
Sbjct 624 CGGTGTAGACGCCGAGCTTTGTATTGTACGAGCTGCTTCGTATGCCTTATCCAAATGGAT 683
Query 655 GATCTCTAAAGAGATAGGACTTGGGAATCTCGGGTTGAAACAGTTAAGTAGCAGCCTCAT 714
|||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 684 GATCTCTAAAGAGATAGGACTTGGGAATCTTGGTTTGAAACAGTTCAGTAGCAGCCTCAT 743
Query 715 GCCTCGTCATTCATTGGGATTTTCGTATGCCACAGAAGCTCATGGGCTTTGGATCTTGAA 774
||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 744 GCCACGTCATTCGTTGGGGTTTTCGTATGCCACAGAAGCTCATGGTCTTTGGATCTTGAA 803
Query 775 AGGCTATTTCCCAATCTTGTCAATGAACGTCACAAATAATAGCTCTAACGAGGTTCACAA 834
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 AGGTTATTTCCCAATCTTGTCAATGAACGTCACAAATAATAGCTCTAACGAGGTTCACAA 863
Query 835 CAAGATCATCAAGTTTCCATTCGTGGAGCCTAAAGAAGCTGTCCTACGTTACGCTTTGTC 894
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 864 CAAGATCGTCAAGTTTCCATTCGTAGAGCCTAAAGAAGCTGTCCTACGTTACGCTTTGTC 923
Query 895 GCATCAACAAGCGGAAATACTAGTACAGTTTGAATACTCCGTTAGGTTTTACGAGAACTA 954
|||||||||||| ||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct 924 GCATCAACAAGCTGAAATACTAGTACAGTTTGAATACTCCGTTAAGTTCTATGAGAACTA 983
Query 955 CATAAAAGTGAACGCACGTGTAGATAACATACGCATCCACGTATCAAAGTTAGGGTTTCA 1014
||||||||| |||||||||||||| ||||||||||||||||| || ||| ||||||||||
Sbjct 984 CATAAAAGTAAACGCACGTGTAGACAACATACGCATCCACGTCTCGAAGCTAGGGTTTCA 1043
Query 1015 CAAAGGAGGAGTTGGCGTGGAGAATCAGATAGCGGATTGTTACTCGGAGGAGAGGTACTT 1074
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1044 CAAAGGAGGAGTTGGCGTGGAGAATCAGATAGCGGATTGTTACTCCGAGGAGAGGTACTT 1103
Query 1075 CCCGTCACGGGTACGGGTCTGGCTTGGGCCAGAAATCGGGTCGAGCCACGTATCGGGGCT 1134
||| |||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 1104 CCCATCACGGGTACGGGTCTGGCTCGGGCCAGAACTCGGGTCCAGCCACGTATCGGGGCT 1163
Query 1135 AAGCCTAGGAAGGTCAACGAAGAACGAAGAGAGAGATATTGAGGTGACTAGGGTGCTAAA 1194
||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1164 AAGTCTAGGAAGGTCAACGAAGAACGAGGAGAGAGATATCGAGGTGACTAGAGTGCTAAA 1223
Query 1195 GGGAAATTTCGGAAAAGGTAAAGTGGCTCCAAGAGTCAAGGCAAGAGCAAGAATGTCAAC 1254
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1224 GGGAAATTTCGGAAAAGGTAAAGTGGCTCCGAGAGTCAAGGCAAGAGCAAGAATGGCAAC 1283
Query 1255 GAAGAGGAAGGTTAAAGATTGGAGAATCGAGCAGGAGAGTGAAGGAAACGCTGCTGTTTT 1314
|||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||
Sbjct 1284 AAAGAGGAAGGTTAAAGATTGGAGAATAGAGCAGGAAAGCGAAGGAAACGCTGCCGTTTT 1343
Query 1315 CGATGCAGTGTTGTACGATAGAGAGAGCGGCCAAGAAGTGACAACGGTTATGCCGAAGCC 1374
||||| ||||||||||||||||||||||| |||||||||||||| |||| |||||||||
Sbjct 1344 TGATGCGGTGTTGTACGATAGAGAGAGCGGTCAAGAAGTGACAACCGTTAAGCCGAAGCC 1403
Query 1375 AAACCAAGAGGGTTTAAAGAATGTGTTTACGAAGAGTGGAGGGATGGTGTTTGGAAGGGA 1434
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1404 AAACCAAGAGGGTTTAAAGAATGTGTTTACGAAGAGTGGGGGGATGGTGTTTGGAAGGGA 1463
Query 1435 TGAGTATGGAGATGAAGTTGGGTGGAGAGTTGGGAGAGAGATGGAAGGAAGTGTGTTGAA 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 TGAGTATGGAGATGAAGTTGGGTGGAGAGTTGGGAGAGAGATGGAAGGAAGTGTGTTGAA 1523
Query 1495 GTGGAGAATGGGTGGCAAAATTTGGCTAACTTATTGGCCAAACAAGTTGAACACTTTGTT 1554
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 GTGGAGACTGGGTGGCAAAATTTGGCTAACTTATTGGCCAAACAAGTTGAACACTTTGTT 1583
Query 1555 TTATGAGACTAGATGTGTAGAGTGGTGTGATGAGGTTGATTTGCCTTTGCTTCCCACTTG 1614
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1584 TTATGAGACTAGATGTGTAGAGTGGTGTGATGAGGTTGATTTGCCGTTGCTTCCTACTTC 1643
Query 1615 TTAGAGTCGCAAAT 1628
||||||||||||||
Sbjct 1644 TTAGAGTCGCAAAT 1657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80421273090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5