BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480386

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G15050.1 | Symbols: LTP, LTP7 | lipid transfer protein | chr...   529    9e-150


> AT2G15050.1 | Symbols: LTP, LTP7 | lipid transfer protein | chr2:6518843-6519360 
FORWARD LENGTH=518
Length=518

 Score =  529 bits (286),  Expect = 9e-150
 Identities = 359/394 (91%), Gaps = 6/394 (2%)
 Strand=Plus/Plus

Query  7    GATATATATGGCTGGTCTTATGAAGTT-GGAATGCTTGGTCTTCGTCTACATGATTGCGG  65
            ||||||||||||||||||||||||||| || |||||||||||| |||| | |||||||||
Sbjct  39   GATATATATGGCTGGTCTTATGAAGTTAGG-ATGCTTGGTCTTTGTCTTCGTGATTGCGG  97

Query  66   CGGGTCCAATCACAGCAAAGGCGGCTCTTAGCTGTGGCGATGTTAATAGCAATTTGAAAC  125
            | |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct  98   CCGGTCCAATCACAGCAAAGGCGGCTCTGAGCTGTGGCGAAGTTAACAGCAATTTGAAAC  157

Query  126  CATGCACTGGCTACTTGACCAATGGTGGTATCACTAGCCCAGGCCCACAGTGCTGCAACG  185
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  158  CGTGCACTGGCTACTTGACCAATGGTGGTATCACTAGCCCAGGCCCACAGTGCTGCAATG  217

Query  186  GCGTTAGAAAGCTTAACGGCATGGTCCTTACAACACTAGACCGTCAGCAAGCTTGCCGTT  245
            | |||||||||||||||||||||||||||||||| |||||||||| |||||| || ||||
Sbjct  218  GTGTTAGAAAGCTTAACGGCATGGTCCTTACAACCCTAGACCGTCGGCAAGCATGTCGTT  277

Query  246  GCATTAAAAATGCTGCTAGAGCCGTTGGCCCTGCTCTCAAAGCTGACCGAGCTGCTGCGA  305
            ||||||||||||| ||||||  ||| ||||||| |||||| |||||||| ||||||| ||
Sbjct  278  GCATTAAAAATGCCGCTAGAAACGTCGGCCCTGGTCTCAACGCTGACCGTGCTGCTGGGA  337

Query  306  TTCCTAGGAGATGCGGAGTCAAAATACGTTACAATACCACAA-TCAGGACCACCACCAGG  364
            ||||||||||||||||| ||||||||| ||||| |||| ||| |||||  || ||||| |
Sbjct  338  TTCCTAGGAGATGCGGAATCAAAATACCTTACAGTACC-CAAATCAGGTTCAACACCAAG  396

Query  365  TGCAACACGT-CTATATGTTAATCTCTTTCTCAT  397
            |||||||||| | |||||||||||||||||||||
Sbjct  397  TGCAACACGTAC-ATATGTTAATCTCTTTCTCAT  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18749870377


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5