BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480389
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15090.1 | Symbols: KCS8 | 3-ketoacyl-CoA synthase 8 | chr2:... 2555 0.0
AT4G34250.1 | Symbols: KCS16 | 3-ketoacyl-CoA synthase 16 | chr... 929 0.0
AT2G15120.1 | Symbols: | pseudogene, disease-resistance family... 335 9e-91
> AT2G15090.1 | Symbols: KCS8 | 3-ketoacyl-CoA synthase 8 | chr2:6542256-6543947
FORWARD LENGTH=1692
Length=1692
Score = 2555 bits (1383), Expect = 0.0
Identities = 1554/1636 (95%), Gaps = 13/1636 (1%)
Strand=Plus/Plus
Query 3 CTACTCTTAGGTTATATCCAATGAAGAACTTAAATATGGTTTTCTTCAAGATCTTCTTCA 62
||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||| |
Sbjct 61 CTACTCTTAGGTTATCTCCAATGAAGAACTTAAAGATGGTTTTCTTCAAGATCCTCTTTA 120
Query 63 TCTCTTTAATGGTAGGATTAGCCATGAAAGGATCTTGGATCAACCTAGAAGATCTCCAAA 122
|||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 121 TCTCTTTAATGGCAGGATTAGCCATGAAAGGATCTAAGATCAACGTAGAAGATCTCCAAA 180
Query 123 ACTTCTTCCTCCACCATATACAGAACAACCTCCAAACCATAAGCCTTCTCTCGTTTCTTG 182
| |||| ||||||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct 181 AGTTCTCCCTCCACCATACACAGAACAACCTCCAAACCATAAGCCTTCTATTGTTTCTTG 240
Query 183 TTGGTTTTGTGTGGATCCTCTACATGTTAACCCGTCCTAAACCCGTTTACCTTGTTGACT 242
| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 241 TCGTTTTTGTGTGGATCCTCTACATGTTAACCCGACCTAAACCCGTTTACCTTGTTGATT 300
Query 243 TCTCCTGCTACCTCCCACCGTCGCATCTCAAAGTTAGTATCCATACTCTAATGGGACACG 302
||||||||||||| ||||||||||||||||| || |||||||| || |||||||||||||
Sbjct 301 TCTCCTGCTACCTTCCACCGTCGCATCTCAAGGTCAGTATCCAAACCCTAATGGGACACG 360
Query 303 CGAGACGTGCAAGAGAAGCAGGGATGTGTTGGAAGAACAAAGAGAGCGACCATTTAGTTG 362
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 CAAGACGTGCAAGAGAAGCAGGCATGTGTTGGAAGAACAAAGAGAGCGACCATTTAGTTG 420
Query 363 ACTTCCAAGAGAAGATTCTTGAACGTTCCGGTCTTGGTCAAGAAACATACATCCCCGAGG 422
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 ACTTCCAGGAGAAGATTCTTGAACGTTCCGGTCTTGGTCAAGAAACCTACATCCCCGAGG 480
Query 423 GTCTTCAGTGCTTCCCACTTCAGCAAGACATGGGGGCTTCACGTAAAGAGACTGAAGAAG 482
||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||
Sbjct 481 GTCTTCAGTGCTTCCCACTTCAGCAAGGCATGGGTGCTTCACGTAAAGAGACGGAAGAAG 540
Query 483 TAATATTCGGAGCTCTTGACAATCTTTTTCGCAACACCGGTGTAAAACCTGATGATATTG 542
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 541 TAATCTTCGGAGCTCTTGACAATCTTTTTCGCAACACCGGTGTAAAACCTGATGATATCG 600
Query 543 GTATATTAGTGGTGAATTCTAGCACGTTTAATCCTACTCCATCACTCGCTTCCATGATTG 602
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 601 GTATATTGGTGGTGAATTCTAGCACGTTTAATCCAACTCCATCACTCGCCTCCATGATTG 660
Query 603 TGAACAAGTACAAACTCAGAGACAACATCAAGAGTTTGAATCTTGGAGGGATGGGTTGCA 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGAACAAGTACAAACTCAGAGACAACATCAAGAGTTTGAATCTTGGAGGGATGGGTTGCA 720
Query 663 GTGCTGGAGTTATAGCTGTTGATGTCGCTAAGGGATTACTACAAGTTCATAGGAACACTT 722
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTGCCGGAGTTATAGCTGTTGATGTCGCTAAGGGATTACTACAAGTTCATAGGAACACTT 780
Query 723 ATGCTATTGTAGTAAGCACAGAGAACATCACTCAGAACTTGTACTTGGGGAAAAACAAAT 782
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 781 ATGCTATTGTAGTAAGCACAGAGAACATCACTCAGAACTTATACTTGGGGAAAAACAAAT 840
Query 783 CAATGCTAGTCACAAACTGTTTGTTCCGGGTTGGTGGTGCTGCGGTTCTGCTTTCAAACA 842
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 841 CAATGCTAGTCACAAACTGTTTGTTCCGCGTTGGTGGTGCTGCGGTTCTGCTTTCAAACA 900
Query 843 GATCTAGAGACCGTAAACGCGCAAAATACGAGCTTGTTCACACGGTGCGGATCCATACCG 902
|||||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||
Sbjct 901 GATCTAGAGACCGTAACCGCGCCAAATACGAGCTTGTTCACACCGTACGGATCCATACCG 960
Query 903 GATCAGATGATAGGTCCTTCGAGTGTGCAACACAAGAAGAAGATGAAGATGGTATAATTG 962
|||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 961 GATCAGATGATAGGTCGTTCGAATGTGCGACACAAGAAGAGGATGAAGATGGTATAATTG 1020
Query 963 GAGTTACCTTGACAAAGAATCTACCTATGGTGGCTGCAAGGACTCTTAAGATCAATATTG 1022
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1021 GAGTTACCTTGACAAAGAATCTACCTATGGTGGCTGCAAGGACTCTTAAGATAAATATCG 1080
Query 1023 CAACTTTGGGTCCTCTTGTTCTTCCACTGAAAGAGAAGCTTGCCTTCTTTATTACTTTTG 1082
||||||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||
Sbjct 1081 CAACTTTGGGTCCTCTTGTACTTCCATTAAAAGAGAAGCTAGCCTTCTTTATTACTTTTG 1140
Query 1083 TCAAGAAGAAGTATTTCAAGCCAGAGTTAAGGAACTATACACCAGATTTCAAGCTTGCCT 1142
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1141 TCAAGAAGAAGTATTTCAAGCCAGAGTTAAGGAATTATACACCAGATTTCAAGCTTGCCT 1200
Query 1143 TTGAGCATTTCTGTATCCACGCTGGTGGAAGAGCTCTAATAGATGAGCTAGAGAAGAATC 1202
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1201 TTGAGCATTTCTGTATCCACGCTGGTGGAAGAGCTCTAATAGATGAGCTGGAGAAGAACC 1260
Query 1203 TTAAGCTTTCTCCGTTACACGTAGAGGCGTCAAGAATGACATTACACAGGTTTGGTAACA 1262
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1261 TTAAGCTTTCTCCGTTACACGTAGAGGCGTCAAGAATGACACTACACAGGTTTGGTAACA 1320
Query 1263 CTTCTTCTAGCTCAATTTGGTACGAGTTGGCTTATACAGAAGCTAAAGGACGGATGAAGG 1322
|||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1321 CTTCTTCTAGCTCAATCTGGTACGAGTTAGCTTATACAGAAGCTAAAGGAAGGATGAAGG 1380
Query 1323 AAGGAGATAGGATTTGGCAGATTGCTTTGGGGTCAGGTTTTAAGTGCAACAGTTCAGTCT 1382
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1381 AAGGAGATAGGATTTGGCAGATTGCTTTGGGGTCAGGTTTTAAGTGTAACAGTTCAGTAT 1440
Query 1383 GGGTGGCTCTACGCA-ACGTTAAGCCTTCAGCTAACAGTCCATGGGAAGACTGTATGGAT 1441
|||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GGGTGGCTCTGCG-AGACGTTAAGCCTTCAGCTAACAGTCCATGGGAAGACTGTATGGAT 1499
Query 1442 AGATATCCGGTTGAGATTGATATTTAATTTTATGGTTAA-GAGTCCAAACTATCTTATCT 1500
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1500 AGATATCCGGTTGAGATTGATATTTAATTTTATGGTTAAAGAGTCCAATCTATCTTATCT 1559
Query 1501 TGTTTATTTT-GATTGACATTTTATCCTAtgtttgttctttaaagagtttgcattgaata 1559
| |||||||| | |||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1560 TATTTATTTTCG-TTGACATTTTATCCTATGTTTGTT-TT-AAAGAGTTTGCATTGAATA 1616
Query 1560 tt-tgttgttgtctatttgtttga-tttgtttttggtacttgttttAAGTAAGAAGTGAT 1617
|| | |||| ||||||||| | | |||||||| |||||||| || ||||||||||||||
Sbjct 1617 TTAT-TTGTGGTCTATTTGGTA-ACTTTGTTTT-GGTACTTGCTT-AAGTAAGAAGTGAT 1672
Query 1618 GGATGATACTGAATTT 1633
|| ||||||||| |||
Sbjct 1673 GGGTGATACTGATTTT 1688
> AT4G34250.1 | Symbols: KCS16 | 3-ketoacyl-CoA synthase 16 | chr4:16394708-16396495
FORWARD LENGTH=1788
Length=1788
Score = 929 bits (503), Expect = 0.0
Identities = 1026/1275 (80%), Gaps = 50/1275 (4%)
Strand=Plus/Plus
Query 212 ACCCGTCCTAAACCCGTTTACCTTGTTGACTTCT-CCTGCTACCTCCCACCGTCGCATCT 270
||||| || ||||||||||| || |||||||| | ||||||||||||||||||||||||
Sbjct 261 ACCCGGCCCAAACCCGTTTATCTCGTTGACTT-TAGCTGCTACCTCCCACCGTCGCATCT 319
Query 271 CAAAGTTAGTATCCATACTCTAATGGGACACGCGAGACGTGCAAGAGAAGCAGGGATGTG 330
||||| || | ||| | | ||| ||||| || | || | |||||||| || | |
Sbjct 320 CAAAGCCAGCACCCAGAGGATCATGCAACACGTAAGGCTTGTACGAGAAGCA-GG-CGCG 377
Query 331 TTGGAAGAACAAAGAGAGCGACCA-TTTAGTTGACTTCCAAGAGAAGATTCTTGAACGTT 389
|||||| | ||||| ||| | || | | |||||| ||||||||||| |||||||
Sbjct 378 -TGGAAG--C-AAGAGTCCGATTACTTGA-TGGACTTCTGCGAGAAGATTCTAGAACGTT 432
Query 390 CCGGTCTTGGTCAAGAAACATACATCCCCGAGGGTCTTCAGTGC-TTCCCACTTCAGCAA 448
||||||| || ||||| || ||| | ||||| |||||||| | || ||||| || | |
Sbjct 433 CCGGTCTAGGCCAAGAGACGTACGTACCCGAAGGTCTTCA-AACTTTGCCACTACAAC-A 490
Query 449 G-ACATGGGGGCT-TCACGTAAAGAGACTGAAGAAG-TAATATTCGGAGCTCTTGACAAT 505
| | ||| | | ||||||| |||||| || |||| || |||| || || | || |||
Sbjct 491 GAATTTGGCTG-TATCACGTATAGAGACGGAGGAAGTTATTATT-GGTGCGGTCGATAAT 548
Query 506 CTTTTTCGCAACACCGGTGTAAAACCTGA-TGATATTGGTATATTAGTGGTGAATTCTAG 564
|| ||||||||||| || ||| ||| | |||||| |||||||| ||||||||||| ||
Sbjct 549 CTGTTTCGCAACACGGGAATAAGCCCT-AGTGATATAGGTATATTGGTGGTGAATTCAAG 607
Query 565 CACGTTTAATCCTACTCCATCACTCGCT-TCCATG-A--TT-GTGAACAAGTACAAACTC 619
||| |||||||| || || | ||||| | || | | || ||||| |||| |||||
Sbjct 608 CACTTTTAATCCAACACC-T---TCGCTAT-CAAGTATCTTAGTGAATAAGTTTAAACTT 662
Query 620 AGAGACAACATCAAGAGTTTGAATCTTGGAGGGATGGGTTGCAGTGCTGGAGTTATAGCT 679
|| || || || ||||| ||||||||||| |||||||| || || |||||||| || |||
Sbjct 663 AGGGATAATATAAAGAGCTTGAATCTTGGTGGGATGGGGTGTAGCGCTGGAGTCATCGCT 722
Query 680 GTTGATGTC-GCTAAGGGATTACTACAAGTTCATAGGAACACTTATGCTATTGTAGTAAG 738
| |||| | |||||| | || ||||||||||||| |||||||||||| |||| || ||
Sbjct 723 ATCGATG-CGGCTAAGAGCTTGTTACAAGTTCATAGAAACACTTATGCTCTTGTGGTGAG 781
Query 739 CACAGAGAACATCACTCAGAACTTGTACTTGGGGAAAAACAAATCAATGCTAGTCACAAA 798
||| |||||||||||||| ||||||||| |||| || |||||||||||| | || |||||
Sbjct 782 CACGGAGAACATCACTCAAAACTTGTACATGGGTAACAACAAATCAATGTTGGTTACAAA 841
Query 799 CTGTTTGTTCCGGGTTGGTGGTGCTGCGGTTCTGCTTTCAAACAGATCTAGAGACCGTAA 858
|||||||||||| | ||||| || ||| || ||||||| ||| | |||| ||| |||||
Sbjct 842 CTGTTTGTTCCGTATAGGTGGGGCCGCGATTTTGCTTTCTAACCGGTCTATAGATCGTAA 901
Query 859 ACGCGCAAAATACGAGCTTGTTCACACGGTGCGGATCCATACCGGATCAGATGATAGGTC 918
||||||||||||||||||||||||||| |||||| ||||||||||| ||||||| | ||
Sbjct 902 ACGCGCAAAATACGAGCTTGTTCACACCGTGCGGGTCCATACCGGAGCAGATGACCGATC 961
Query 919 CT-TCGAGTGTGCAACACAAGAAGAAGATGAAGATGGTATAATTGGAGTTACCTTGACAA 977
|| | || |||||||| |||||||| ||||||||||| ||| |||| ||| ||||| |||
Sbjct 962 CTAT-GAATGTGCAACTCAAGAAGAGGATGAAGATGGCATAGTTGGGGTTTCCTTGTCAA 1020
Query 978 AGAATCTACCTATGGTGGCTGCAAGGACTCTTAAGATCAATATTGCAACTTTGGGTCCTC 1037
|||||||||| ||||| |||||||| || || ||||||||||| |||||||||||||| |
Sbjct 1021 AGAATCTACCAATGGTAGCTGCAAGAACCCTAAAGATCAATATCGCAACTTTGGGTCCGC 1080
Query 1038 TTGTTCTTCC-ACTGAAA-GAGAAGCTTGC-CTTCTTTATTACTTTTGTCAAGAAGAAGT 1094
|||||||||| | | || |||||| || | ||||||| | | || || || |||||||
Sbjct 1081 TTGTTCTTCCCA-T-AAGCGAGAAGTTT-CACTTCTTTGTGAGGTTCGTTAAAAAGAAGT 1137
Query 1095 ATT-TCAAGCC-AGAGTTAAGGAACTATACA--CCAGATTTCAAGCTTGCCTTTGAGCAT 1150
|| |||| || | || ||| | | | |||| || ||||||||||| || || ||||||
Sbjct 1138 -TTCTCAACCCCA-AGCTAAAGCA-T-TACATTCCGGATTTCAAGCTCGCATTCGAGCAT 1193
Query 1151 TTCTGTATCCACGCTGGTGGAAGAGCTCTAATAGATGAGCTAGAGAAGAATCTTAAGCTT 1210
||||||||||| || ||||| ||||| ||||| |||||| | |||||||||||| | ||
Sbjct 1194 TTCTGTATCCATGCGGGTGGTAGAGCGCTAATTGATGAGATGGAGAAGAATCTTCATCTA 1253
Query 1211 TCTCCGTTACACGTAGAGGCGTCAAGAATGACATTACACAGGTTTGGTAACACTTCTTCT 1270
|||| || |||| ||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 1254 ACTCCACTAGACGTTGAGGCTTCAAGAATGACATTACACAGGTTTGGTAATACCTCTTCG 1313
Query 1271 AGCTCAATTTGGTACGAGTTGGCTTATACAGAAGCTAAAGGACGGATGAAGGAAGGAGAT 1330
||||| |||||||||||||||||||| |||||||| |||||| |||||| | ||||||||
Sbjct 1314 AGCTCCATTTGGTACGAGTTGGCTTACACAGAAGCCAAAGGAAGGATGACGAAAGGAGAT 1373
Query 1331 AGGATTTGGCAGATTGCTTTGGGGTCAGGTTTTAAGTGCAACAGTTCAGTCTGGGTGGCT 1390
||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||||
Sbjct 1374 AGGATTTGGCAGATTGCGTTGGGGTCAGGTTTTAAGTGTAATAGTTCAGTTTGGGTGGCT 1433
Query 1391 CTACGCAACGTTAAGCCTTC-AGCTAACAGTCCATGGGAAGACTGTATGGATAGATATCC 1449
|| || ||||| |||||||| | |||| | ||| |||||| | ||| | | | ||||||
Sbjct 1434 CTTCGTAACGTCAAGCCTTCTA-CTAATAATCCTTGGGAACAGTGTCTACACAAATATCC 1492
Query 1450 GGTTGAGATTGATAT 1464
|||||||| |||||
Sbjct 1493 AGTTGAGATCGATAT 1507
> AT2G15120.1 | Symbols: | pseudogene, disease-resistance family
protein / fatty acid elongase-related, similar to fatty acid
elongase 1 (FAE1) (Arabidopsis thaliana) GI:881615; similar
to NtPRp27 (GI:5360263) (Nicotiana tabacum)similar to R
14 protein (GI:27764542) (Glycine max); contains Pfam profile
PF04450: Plant Basic Secretory Protein; blastp match of 71%
identity and 6.0e-20 P-value to GP|18674893|emb|CAD23312.1||AX358183
unnamed protein product {synthetic construct} | chr2:6557367-6558936
FORWARD LENGTH=1570
Length=1570
Score = 335 bits (181), Expect = 9e-91
Identities = 203/213 (95%), Gaps = 3/213 (1%)
Strand=Plus/Plus
Query 1295 TATACAGAAGCTAAAGGACGGATGAAGGAAGGAGATAGGATTTGGCAGATTGCTTTGGGG 1354
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1359 TATACAGAAGCTAAAGGAAGGATGAAGGAAGGAGATAGGATATGGCAGATTGCTTTGGGG 1418
Query 1355 TCAGGTTTTAAGTGCAACAGTTCAGTCTGGGTGGCTCTACGCA-ACGTTAAGCCTTCAGC 1413
|||||||||||||| ||||||||||| ||||||||||| || | ||||||||||||||||
Sbjct 1419 TCAGGTTTTAAGTGTAACAGTTCAGTGTGGGTGGCTCTGCG-AGACGTTAAGCCTTCAGC 1477
Query 1414 TAACAGTCCATGGGAAGACTGTATGGATAGATATCCGGTTGAGATTGATATTTAATTTTA 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 TAACAGTCCATGGGAAGACTGTATGGATAGATATCCGGTTGAGATTGATATTTAATTTTA 1537
Query 1474 TGGTTAA-GAGTCCAAACTATCTTATCTTGTTT 1505
||||||| |||||||| |||||||||||| |||
Sbjct 1538 TGGTTAAAGAGTCCAATCTATCTTATCTTATTT 1570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80672275815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5