BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480391
Length=1411
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15230.1 | Symbols: ATLIP1, LIP1 | lipase 1 | chr2:6612581-6... 2202 0.0
> AT2G15230.1 | Symbols: ATLIP1, LIP1 | lipase 1 | chr2:6612581-6615395
FORWARD LENGTH=1458
Length=1458
Score = 2202 bits (1192), Expect = 0.0
Identities = 1345/1417 (95%), Gaps = 18/1417 (1%)
Strand=Plus/Plus
Query 1 TTTCAGATAGAAACAGTTCCGTCACCGGCGACGATGAAATGGTTGCTCGTCGCCGTATTG 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 TTTCAGATAGAAACAGTCCCGTCACCGGCGACGATGAAATGGTTGCTCGTCGCCGTATTG 112
Query 61 ACCGCTTTTACGATCTTCTCCGCCGTAACACAGTCCCATCTCCTCCATGGATCTCCGGTC 120
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 113 ACCTCTCTTACGATCTTCTCCGCCTTAACACAGTCCCATCTCCTCCATGGATCTCCGGTC 172
Query 121 AATTCTCTCTGCGCTGATCTCATTCATCCCGCTAATTACTCCTGCACTGAACACACTATT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 173 AATTCTCTCTGCGCTGATCTCATTCATCCCGCTAATTACTCCTGCACTGAACACAGTATT 232
Query 181 CAAACAAAGGATAATTACATATTAGCTCTTCAACGTGTAGCTTCTCTTGGTCCAAGACTT 240
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 CAAACAAAGGATGGTTACATATTAGCTCTTCAACGTGTAGCTTCTCTTGGTCCAAGACTT 292
Query 241 CAATATGGTCCACCTGTTTTGCTTCAACACGGAT-TATTTATGGCTGGAGATGTGTGGTT 299
|||| ||||||||||||||||||||| ||||| | | |||||||||||||||||||||||
Sbjct 293 CAATCTGGTCCACCTGTTTTGCTTCAGCACGG-TCTCTTTATGGCTGGAGATGTGTGGTT 351
Query 300 CTTGAATTCACCAAAAGAGTCACTAGGTTTCATTCTTGCTGATCATGGGTTTGATGTTTG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CTTGAATTCACCAAAAGAGTCACTAGGTTTCATTCTTGCTGATCATGGGTTTGATGTTTG 411
Query 360 GGTTGGAAATGTTCGTGGTACACGTTATAGTTATGGACATGTAACTTTGTCTGAAACTGA 419
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 412 GGTTGGAAATGTTCGTGGTACACGTTACAGTTATGGACATGTAACTTTGTCTGACACTGA 471
Query 420 TAAGGAATTTTGGGACTGGAGTTGGCAAGATTTGGCCATGTATGACTTAGCAGAAATGAT 479
|||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 472 TAAGGAGTTTTGGGACTGGAGTTGGCAAGATTTGGCAATGTATGACTTGGCAGAAATGAT 531
Query 480 TCAGTATCTATATTCGATTTCAAACTCCAAAATTTTCCTTGTTGGACATTCTCAGGGGAC 539
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TCAGTATCTGTATTCAATTTCAAACTCCAAAATTTTCCTTGTTGGACATTCTCAGGGGAC 591
Query 540 TATCATGTCTTTTGCTGCTCTTACTCAGCCGCATGTTGCGGAAATGGTTGAAGCAGCTGC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TATCATGTCTTTTGCTGCTCTTACTCAGCCGCATGTTGCGGAAATGGTTGAAGCAGCTGC 651
Query 600 GTTGCTTTGTCCAATATCATATTTGGATCATGTTACAGCTCCACTTGTTGAAAGAATGGT 659
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 652 GTTGCTTTGTCCAATATCATATTTGGATCATGTCACAGCTCCTCTTGTTGAAAGAATGGT 711
Query 660 TTTTATGCATCTCGATCAGATGGTAGTTGCTCTTGGGCTGCATCAAATAAACTTTAGAAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TTTTATGCATCTCGATCAGATGGTAGTTGCTCTTGGGCTGCATCAAATAAACTTTAGAAG 771
Query 720 TGATATGTTAGTTAAACTTGTTGATTCGTTATGCGAAGGGCATATGGATTGCACTGATTT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TGATATGTTAGTTAAACTTGTTGATTCGTTATGCGAAGGGCATATGGATTGCACTGATTT 831
Query 780 CCTCACATCCATAACAGGGACGAATTGTTGTTTCAACGCCTCGAGGATAGAATACTATCT 839
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 832 CCTCACATCCATAACAGGGACGAATTGTTGTTTCAACGCCTCGAAGATAGAATACTATCT 891
Query 840 AGATTACGAGCCTCACCCATCATCTGTCAAGAATATACGACATCTTTTCCAAATGATTCG 899
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 892 AGATTACGAGCCTCACCCATCATCTGTCAAGAATATTCGACATCTTTTCCAAATGATTCG 951
Query 900 GAAGGGGACATTTGCACAATACGACTACGGGTATCTAAAAAATCTACGGA-TATATGGGA 958
|||||| || |||||||||||||||||||||||| | ||||||||||||| | ||||||
Sbjct 952 GAAGGGAACCTTTGCACAATACGACTACGGGTATTTCAAAAATCTACGGACT-TATGGGC 1010
Query 959 TGTCGAAACCTCCAGAATTCAAACTCAA-CCTCATCCCGGCATCATTACCAATGTGGATG 1017
||||||||||||||||||||| ||| || || ||||||||||||||||||||||||||||
Sbjct 1011 TGTCGAAACCTCCAGAATTCATACT-AAGCCACATCCCGGCATCATTACCAATGTGGATG 1069
Query 1018 GGGTATGGTGGAACTGATGGTTTAGCAGATGTGACAGATGTGGAACATACTCTCGCGGAA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 GGGTATGGTGGAACTGATGGTTTAGCAGATGTGACAGATGTGGAACATACTCTCGCGGAA 1129
Query 1078 CTACCTTCCAGACCAGAGTTACTTTATCTTGAGGATTATGGTCACATTGACTTTGTGCTT 1137
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1130 CTACCTTCCAGTCCAGAGTTACTATATCTTGAGGATTATGGTCACATTGACTTTGTGCTT 1189
Query 1138 GGCACAAGTGCTAAAGAAGATGTCTATAAGCACATGATTCAATTTTTCAGAGCAA-GGAG 1196
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1190 GGCTCAAGTGCTAAAGAAGATGTCTATAAGCACATGATTCAATTTTTCAGAGCAAAGGTT 1249
Query 1197 AAAGTCTAGTAGTTGGTAAAATACTCAATACACTGCTCTGCTTTGCACATATCTATTTTC 1256
|| |||||||||||||||||||||| ||||| ||| |||||||||||||||| ||| |||
Sbjct 1250 AA-GTCTAGTAGTTGGTAAAATACTAAATACTCTGTTCTGCTTTGCACATATTTATCTTC 1308
Query 1257 -ACGAAAATATATGTACGCATCTGATTGTAAATATTT-CCTTAATGGTCGAAATTTTATG 1314
|| ||| ||||||||| ||||||||||||||||||| ||| | || | ||||||| ||
Sbjct 1309 CAC-AAA-TATATGTACACATCTGATTGTAAATATTTTCCT-ATTGAACTAAATTTTCTG 1365
Query 1315 TTTGAAAGAGCTACATAGTACCAATCTAGATATGAAGAGATAGAACAGTCCAGTGAGTGA 1374
|| |||||||||| ||| ||||||||||| ||||| |||||||||| |||||| | |
Sbjct 1366 CTTCAAAGAGCTACTTAGCACCAATCTAGACATGAACAGATAGAACAATCCAGT-A---A 1421
Query 1375 CTCGAGGTGAAATATATTGGTCGTTGATGAGTTTAGA 1411
||| || ||||||| ||||||||| ||||||||||||
Sbjct 1422 CTCAAG-TGAAATAGATTGGTCGTCGATGAGTTTAGA 1457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69527754825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5