BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480392
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15270.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 920 0.0
> AT2G15270.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1168 (InterPro:IPR009548);
Has 1930 Blast hits to 1364 proteins in 219 species:
Archae - 0; Bacteria - 44; Metazoa - 762; Fungi - 280; Plants
- 96; Viruses - 3; Other Eukaryotes - 745 (source: NCBI BLink).
| chr2:6637878-6639419 FORWARD LENGTH=841
Length=841
Score = 920 bits (498), Expect = 0.0
Identities = 590/633 (93%), Gaps = 12/633 (2%)
Strand=Plus/Plus
Query 1 TGTGACCGGAATTAGGGTTTTGACGATGTCGTCCGGGAAGCCAAAGCAAGGCGGTGACAC 60
|||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||
Sbjct 65 TGTGACCGGAATTAGGGTTTCGACAATGTCGTCCGGGAAGCCAAAGCAAGGC---GACAC 121
Query 61 ACGATTGGTGGTTGCTGCCACGACGGCGTCGGCATTGATGGAAGCCAAGAAGTCTGATCA 120
||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||
Sbjct 122 ACGATTGGTGGTTGCTGCCACTACGGCGTCGGCATTGATGGAAGCGAAGAAGGCTGATCA 181
Query 121 CGGAGGATCTTCTTCTATCGTTGAGTATAAACCGCCGGTGATGCTTGAAGATGAAGAAGA 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CGGAGGATCTTCGTCTATCGTTGAGTATAAACCGCCGGTGATGCTTGAAGATGAAGAAGA 241
Query 181 TCTAGAAGTAAAGCTTCGACGAATCCTTGAGAACGTTCCTGTTCGTGTTAGCAATACTTC 240
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 242 TCTAGAAGTAAAGCTCCGACGTATCCTTGAGAACGTTCCTGTTCGTGTTAGTAATACTTC 301
Query 241 TGGAAGTTCTGCTGGTTCTGGTTCGGGTGATTTTCATCAGTACCGGCAAATGAGGCGAAG 300
||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||| ||
Sbjct 302 TGGAAGTTCCGCTGGTTCTGGTTCTGGAGATTTCCATCAGTACCGGCAAATGAGGCGGAG 361
Query 301 AGAACAAGACCGACTCACAAGGATGGATATTGACTATAACAAGAGGTTACAAATGGCAGA 360
||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 362 AGAACAAGACCGACTAACAAGGATGGATATTGACTATAACAAGCGGTTAAAAATGGCAGA 421
Query 361 GTTTACTATAAGAAGAGAAGAGAAACTA-AAAGCTGCAGAGGagaaaacatcaaagaagc 419
|||||||||||||||||||||||||| | |||||||||||||| |||||||| |||||||
Sbjct 422 GTTTACTATAAGAAGAGAAGAGAAAC-AGAAAGCTGCAGAGGAAAAAACATCGAAGAAGC 480
Query 420 gtttgaaacgccaaaagaagaagcagaaaaaacaagagaagaag-agaaaaccaaacact 478
|||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||
Sbjct 481 GTTTGAAACGCCAAAAGAAGAAGCAGAAGAAACAGGAGAAGAAGCA-AAAACCAAACACT 539
Query 479 actgaggaacaagaaaagcaacctaaagaagGAGAAATATCATCTGACGA-GG--ACGGT 535
||||||||| ||| ||||||||| | || ||||||||||||||||||||| || | | |
Sbjct 540 ACTGAGGAAGAAGTAAAGCAACCGAGAGTAGGAGAAATATCATCTGACGAAGGTGAAGAT 599
Query 536 GAAG-ATGAAGAAGAGTCTGTGCTAGAACCTTTACGTCCGATGTTTAATATCAAGTTCCA 594
|||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 GAAGTA-GAAGAAGAGTCTGTGCTAGAACCTTTACGTCCAATGTTTAATATCAAGTTCCA 658
Query 595 AGAGAACCGTGCATAGCTTTTCTTGTGACATGT 627
|||||||||| |||||||||| |||||||||||
Sbjct 659 AGAGAACCGTTCATAGCTTTTATTGTGACATGT 691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5