BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480394
Length=797
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15280.1 | Symbols: | Reticulon family protein | chr2:66401... 1175 0.0
> AT2G15280.1 | Symbols: | Reticulon family protein | chr2:6640161-6642350
FORWARD LENGTH=1011
Length=1011
Score = 1175 bits (636), Expect = 0.0
Identities = 737/786 (94%), Gaps = 5/786 (1%)
Strand=Plus/Plus
Query 1 TCGCTACAATGGAAGAATCTGTTCATCAATCGATTCGCTTTGGCTCAGTTGCGGATTTGA 60
||||| |||||||||||||||||||||||||||| || || ||||||||||| ||||| |
Sbjct 23 TCGCTGCAATGGAAGAATCTGTTCATCAATCGATACGATTCGGCTCAGTTGCAGATTTAA 82
Query 61 TTATGTGGAAGAATCGACGCGTAGGGTTTCTTTTACTTGGATCAACAACATTGTTATGGT 120
| ||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||
Sbjct 83 TCATGTGGAAGAATCGACGCGGAGGGTTTCTTCTACTTGGATCAACGACATTGTTATGGT 142
Query 121 TCCTATTCGAGAAATGTGGATACAGTTTCTTCCCTTTTGTTGTTAATACTCAGCTTCTTC 180
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 143 TCCTCTTTGAGAAATGTGGATACAGTTTCTTCCCCTTTGTTGTTAATACTCAGCTTC-TC 201
Query 181 T-CGTTGTTATTCTCTTCCTCTGGGCCAAATCTGCTATTCTCTTCAATAGACCTATGCCT 239
| ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 202 TCCGTCGTTATACTCTTCCTCTGGGCCAAATCTGCTATTCTCTTCAATAGGCCTATGCCT 261
Query 240 CAGCTACCTAATCTTGAAATCTCTGAGGCATCTGTGTTTATGGTGGCTGATGCTCTACGA 299
|| |||||||||||||||||| |||||| || |||||||||||||||||||||| |||||
Sbjct 262 CAACTACCTAATCTTGAAATCACTGAGGAATTTGTGTTTATGGTGGCTGATGCTATACGA 321
Query 300 GTTTGGATTAATACCGTGCTCGCTGTTGCTCGTGAGATTTACGTTGGAAGAAATGCAAAG 359
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 322 GTCTGGATTAATACCGTGCTCGCTGTTGCTCGTGAGATTTACGTGGGAAGAAATGCAAAG 381
Query 360 CAACTCTTTCGGGTGAGTGTTGTGTTGTGGACAGTATCGTTTGTTGGAAATTTCTTAAAC 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 382 CAACTCTTTCGGGTGAGTGTTGTGTTGTGGACAGTATCATTTGTTGGAAATTTCTTAAAC 441
Query 420 TTCCTCACAATACTCTATCTTGGTGTTGTTCTCAGTCTGTTGATTCCCATTCTGTACGAG 479
|||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||
Sbjct 442 TTCCTCACAATACTCTATCTTGGTGTTGTTCTGAGTCTGTTGATTCCCTTTTTGTACGAG 501
Query 480 AGATATCAAGATCACATTGACGAAAAGCTATCTTTAACACATCGAGTCATTCAGACACAA 539
||||| || |||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 502 AGATACCAGGATCTTATTGACGAGAAGCTATCTTTAACTCATCGAGTCATTCAGACACAG 561
Query 540 TACAGGAAGATCGACGAAAGATTACTACAGAAGATTATTGCTAAGCCCACAAATAAGATA 599
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 TACAGGAAGATCGATGAAAGATTACTACAGAAGATTATTGCTAAGCCCACAAATAAGATA 621
Query 600 AAGAAGATGCAATAGTGAAAGATA-CAAGACAGAGTAGGACTGAGTGGGAAGGTAAAACT 658
|||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||
Sbjct 622 AAGAAGATGCAATAGTGAAAGAAAACAAGACAGAATTGGACTGAGTGGGAAGGTAAAACT 681
Query 659 AAGTAAAG-GTGAAACAGGCGACGTAACAAGCTATGAGTGTAGATGACT-AGAGAAGTTG 716
|||||||| ||| ||||||||||||||| |||||||| ||||||||| | ||||||||||
Sbjct 682 AAGTAAAGAGTGCAACAGGCGACGTAACTAGCTATGATTGTAGATGAATTAGAGAAGTTG 741
Query 717 AGACTTGAGTGTGGTTTTGTCATGAATCAACCCTTCATTTGATTCTCTCTTTATAGAGAC 776
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 742 AGACTTGAGTGTGGTTTTGTCATGAACCAACCCTTCATTTGATTCTCTCTTTATATAGAC 801
Query 777 ACTGTG 782
||||||
Sbjct 802 ACTGTG 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38780761484
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5