BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480399
Length=2235
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15300.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3247 0.0
> AT2G15300.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr2:6649630-6652010 FORWARD LENGTH=2235
Length=2235
Score = 3247 bits (1758), Expect = 0.0
Identities = 2083/2242 (93%), Gaps = 14/2242 (1%)
Strand=Plus/Plus
Query 1 ATGACTTCCATCAGAAGCAACCTCTTCTTCCATCttttttttCTACTTCTCCCTACTCTT 60
|||||||||| |||||||||||||||| |||||||| | |||| | ||| |||||||||
Sbjct 1 ATGACTTCCAACAGAAGCAACCTCTTCCTCCATCTTCTCCTTCTTCATCTTCCTACTCTT 60
Query 61 ATCCAAGCTCTTAACACTGATGGTGTTGCTTTACTCTCTTTCAAATACTCAATCCTCAAT 120
||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||
Sbjct 61 ATCCAAGCTCTTAACACAGATGGTGTTGCTTTACTCTCTTTCAAGTATTCCATCCTCAAT 120
Query 121 GACCCTCTCTCT-GTTCTACGAAACTGGAACTACGACGATGAAACACCGTGCTCTTGGAC 179
|| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATCCTCTCT-TAGTTCTACGAAACTGGAACTACGACGATGAAACACCGTGCTCTTGGAC 179
Query 180 CGGTGTTACCTGTACAGAGCTTGGGACTCCCAACACCCCAGACATGTTTAGAGTAACAAG 239
||||||||| || ||||||||||||| |||||||||||| |||||||||||||| |||||
Sbjct 180 CGGTGTTACATGCACAGAGCTTGGGATTCCCAACACCCCTGACATGTTTAGAGTTACAAG 239
Query 240 CTTGGTTCTTCCCAACAAAAAGCTTCTCGGTTCTGTTTCTCCCGACTTATTTTCGATCCT 299
|||||||||||||||||| ||||||| |||||||||||||||||||| ||||| |||||
Sbjct 240 TTTGGTTCTTCCCAACAAACAGCTTCTTGGTTCTGTTTCTCCCGACTTGTTTTCAATCCT 299
Query 300 ACATCTAAGGATCTTGGATCTCTCCAACAATTTCTTCCATGGGTCACTGCCGGATTCTGT 359
||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 300 ACATCTAAGAATCTTGGATCTCTCCGACAATTTCTTCCATGGATCACTGCCGGATTCTGT 359
Query 360 GTCCAATGCCAGTGAGCTTCGTGTTCTATCCCTTGGTAACAACAAGGTTTCTGGTGAACT 419
|||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 360 GTCCAACGCCAGTGAGCTTCGTATTCTGTCCCTTGGTAACAACAAGGTTTCTGGTGAACT 419
Query 420 ACCCGGTAGTATCAGCAACGTGGCTAGTCTCCAGCTCTTGAATCTCTCTGCCAACGCCTT 479
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 ACCCCGTAGTATCAGCAACGTGGCTAGTCTGCAGCTCTTGAATCTCTCTGCCAACGCCTT 479
Query 480 CACCGGCAAAATCCCTCCCAGTCTCCCCCTTCTCAAGAATCTGACAGTCATTTCCTTGGC 539
||||| ||||||||||||| |||| | |||| |||||||||||||||||||||||||||
Sbjct 480 GACCGGAAAAATCCCTCCCAATCTCTCACTTCCCAAGAATCTGACAGTCATTTCCTTGGC 539
Query 540 GAAGAATTCATTTTCAGGTGATATTCCAAGCGGGTTTGAATCAGTACAAGTTCTGGATAT 599
|||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 540 GAAGAATTCATTTTCAGGCGATATTCCAAGCGGGTTTGAAGCAGTACAGGTTCTAGATAT 599
Query 600 TTCCTCAAATCTTCTAGACGGATCTCTTCCTCCGGACTTT-GGAGGAACAAGTCTGCATT 658
|||||||||||||||||||||||||||||||| || ||| ||||||||||||| | ||
Sbjct 600 CTCCTCAAATCTTCTAGACGGATCTCTTCCTCCAGA-TTTCAGAGGAACAAGTCTCCTTT 658
Query 659 ACCTCAACCTATCACAA-AATCAAATCTTCGGCGTGATTTCTCCATCTTTCACCGAGAAA 717
|||||||| ||||| || |||||||||| |||| ||||||||||| ||||| |||| |||
Sbjct 659 ACCTCAACTTATCA-AACAATCAAATCTCCGGCATGATTTCTCCACCTTTCGCCGAAAAA 717
Query 718 TTTCCAGCAAGCACCATCCTTGATCTCTCCTTCAACAATCTAACGGGACCAATCCCTAGT 777
|||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 718 TTTCCAGCAAGCGCCATCATTGATCTCTCCTTCAACAATCTAACAGGACCAATCCCTAAC 777
Query 778 ACACCACCATTGCTTAACCAAAAGACCGAGTCTTTTTCTGGTAATATAGGCTTTTGTGGT 837
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 778 ACACCACCATTGCTTAACCAAAAGACCGAGTCTTTTTCTGGTAACATAGGCTTATGTGGT 837
Query 838 GAGCCACTAAAGACCCTTTGTTCAATCCCTTCTACTCTATCAGACCCACCAAATATCTCT 897
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CAGCCATTAAAGACCCTTTGTTCAATCCCTTCTACTCTATCAGACCCACCAAATATCTCT 897
Query 898 GAAACTACTTCACCTGCAATAGCAGTCATGCCCAAAACTCCAACACCAACAACCCCATCA 957
|||||||||||||||||||||||||||||||||| ||||||||||||||||| | | |||
Sbjct 898 GAAACTACTTCACCTGCAATAGCAGTCATGCCCACAACTCCAACACCAACAAACTCTTCA 957
Query 958 ATAGAATCACCAAATCAAACAGCCAAAAGCAAACTAAAACCAAGCAAAATCGTCGGCATT 1017
| ||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 958 ACAGAATCAACAAATCAAACAGCCAAAAGCAAACTAAAACCAAGCACAATCATCGGCATT 1017
Query 1018 ACACTTGCAGATATAGCTGCTCTAGCTATCATAGCCATGTTCATCCTCTACATATACCAG 1077
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1018 ACACTTGCAGATATAGCTGGTCTTGCTATCATAGCCATGTTCATCCTCTACATATACCAG 1077
Query 1078 CTCAAGAAACGTAGAAGCTATCAAGAATACAGCACTTTCAACGTCTTACAAAAATGTCTA 1137
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CTCAAGAAACGTAGAAGCTACCAAGAATACAGCACTTTCAACGTCTTACAAAAATGTCTG 1137
Query 1138 GAGAAAAACGATACATTATCCGTCAAGAAATCGAAACACAACCTAGCCGCCGCCTCGGAG 1197
|||||||||||||||||||||||||||||||||||||||||| | |||| ||||| ||||
Sbjct 1138 GAGAAAAACGATACATTATCCGTCAAGAAATCGAAACACAACGTCGCCGACGCCTTGGAG 1197
Query 1198 TTCACGAAATCTCCACCTGCAAAAATGGGATGTGGCTCGTGGATAATTAGAGGGTACGAC 1257
|||||||||||||| ||||||||||||||||| || || ||||||| ||| |||||||
Sbjct 1198 TTCACGAAATCTCCGCCTGCAAAAATGGGATGCGGTTCATGGATAAGCAGAAGGTACGAA 1257
Query 1258 GAAACAACGTCGGCGTCATCAGAGAGTGACGTAGAGAACCAAAAACCCATTGAGACATTT 1317
||||||||||||| |||||| ||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1258 GAAACAACGTCGGTGTCATCCGAGAGTGACATAGAGAACCAAAAACCCGTTGAGGCATTT 1317
Query 1318 AATCGAACAAGTGGTGGGCGTCTAAAACACAACACTGAAACTCAACTAGTGACAGTCGAT 1377
|||||||| |||||||||| |||||||||| ||||||||||||||||||||||| |||
Sbjct 1318 GATCGAACAGGTGGTGGGCGAGTAAAACACAATACTGAAACTCAACTAGTGACAGTGGAT 1377
Query 1378 GGAGAAACTCAGCTAGAGCTAGATACTCTATTAAAGGCATCAGCTTACGTACTTGGAACC 1437
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1378 GGAGAAACTCAGCTGGAGCTAGATACTCTACTAAAGGCATCAGCTTACGTACTTGGAACC 1437
Query 1438 AACAGAAGCGACGGAATCGTGTATAAAGCGGTGTTAGAGAACGGTGAGGCTTTTGCGGTG 1497
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1438 AACAGAAGCGACGGAATTGTGTATAAAGCGGTGTTAGAGAACGGTGCGGCTTTTGCAGTG 1497
Query 1498 CGGCGGATTGGGGCGGAGAGTTGTCCGGCGGCGAAATTCAAGGAATTCGAAAATGAGGTT 1557
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1498 CGGCGGATTGGGGCGGAGAGTTGTCCGGCGGCGAAATTTAAGGAATTCGAAAAGGAGGTT 1557
Query 1558 CAGGGTATCGCTAAACTTCGCCACCCAAATCTCGTTAGGGTTCGTGGCTTCGTCTGGGGA 1617
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1558 CAGGGTATCGCTAAACTTCGTCACCCAAATCTCGTTAGGGTTCGTGGCTTCGTTTGGGGG 1617
Query 1618 AAAGAAGAGAAGCTTCTCATCTCCGACTTTGTCCCAAATGGAAACCTACCTCTCTCCTCC 1677
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1618 AAAGAAGAGAAGCTTCTCATCTCCGACTATGTCCCAAATGGAAACCTACCTCTATCCTCC 1677
Query 1678 ATCTCCGCAAAATCAGGCTCGTCTTCTCATAATCCTCTCTCATTTGAGGCACGGCTTAAG 1737
||||||||||||||| |||||| ||||||||| |||||||| |||||||||||||| |||
Sbjct 1678 ATCTCCGCAAAATCAAGCTCGTTTTCTCATAAACCTCTCTCCTTTGAGGCACGGCTCAAG 1737
Query 1738 ATAGCAAGAGGAATAGCTAGAGGAATTGCTTACATCCACGACAAGAAGCATGTGCACGGC 1797
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1738 TTAGCAAGAGGAATAGCTAGAGGAATTGCTTATATCCACGACAAGAAGCATGTGCACGGC 1797
Query 1798 AACATCAAGGCCAATAACATTCTCTTGGACTCCGAGTTCGAGCCCATAATTACAGATATG 1857
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1798 AACATCAAGGCCAATAACATTCTCTTGGACTCCGAGTTTGAGCCTGTAATTACAGATATG 1857
Query 1858 GGCCTTGATCGTATTATGTCTCCGGCCCATTCACTCACGG-CTGGACCAGTGTCGAGCCC 1916
|||||||||||||||||| || ||||||||| |||||||| | || ||| ||||||||
Sbjct 1858 GGCCTTGATCGTATTATGACTTCGGCCCATTTACTCACGGACGGG-CCATTGTCGAGCTT 1916
Query 1917 ACA-GCACCATCCACCAGAGTGGTCGACAAGCCAAAAGCCAAACCCCAAATGGGATGTCT 1975
||| | |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1917 ACAAG-ACCAACCACCAGAGTGGTCGACAAGCCAGAAGCCAAACCCCAAATGGGATGTAT 1975
Query 1976 ATTCCTTTGGTGTTAT-CGTCTTGGAGCTTCTCACAGGTAGAGTTTTTTCGGTTGATCGA 2034
|||| ||||||||||| | ||||||| ||||||||||| | |||||||||||| ||||||
Sbjct 1976 ATTCATTTGGTGTTATAC-TCTTGGAACTTCTCACAGGCATAGTTTTTTCGGTCGATCGA 2034
Query 2035 GATTTAGTTAGCGATTCTGAGACCGATGAGAAAAGTTGGTTCTTGAGGTTGGTCGATGGG 2094
||||| ||| ||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 2035 GATTTGGTTCGCGATTCTGAGACTGATGAGAAAAGTTGGTTCTTGAAGTTGGTCGATGGG 2094
Query 2095 -ACAATTAGGGATGATGTGGCTCACCGCGAGGATGAGGCTGTTGCATGCTTGAAGTTAGG 2153
| |||||||| ||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 2095 GA-AATTAGGGTTGAGGTGGCTCACCGCGAGGATGAGGCGGTCGCATGCTTGAAGTTAGG 2153
Query 2154 CTATGGTTGTGTCTCTTCCTTGCCTCAAAAGCGACCGTCCATGAAGGAAGTGGTGCAAGT 2213
||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2154 CTATGAATGTGTCTCCTCCTTGCCTCAAAAGCGACCGTCTATGAAGGAAGTGGTGCAAGT 2213
Query 2214 GCTAGAGAAAATGTTTGTTTAG 2235
||||||||||||||||||||||
Sbjct 2214 GCTAGAGAAAATGTTTGTTTAG 2235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110893003905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5