BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480400
Length=1018
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15310.1 | Symbols: ATARFB1A, ARFB1A | ADP-ribosylation fact... 1454 0.0
> AT2G15310.1 | Symbols: ATARFB1A, ARFB1A | ADP-ribosylation factor
B1A | chr2:6653791-6655501 FORWARD LENGTH=1088
Length=1088
Score = 1454 bits (787), Expect = 0.0
Identities = 949/1025 (93%), Gaps = 20/1025 (2%)
Strand=Plus/Plus
Query 1 TCTGAAAATCAAACTTTCAGTTA-tttttcattttttCTCATGTGTGTAAAATACTCTTC 59
|||| |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||
Sbjct 4 TCTGCAAATCAAACTTTCAGTTATTTTTTC-TTTTCTCTCATGTGTGTAAAATACTCTTC 62
Query 60 ACAGATCTCATATAAGCCCAAGCTTGAATTGAAATATCA-AAGCAGTGTTTCTTTCACTA 118
| |||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||
Sbjct 63 ATAGATCTCATATAAGTCCAAGCTTGAATTGAAATATCAGAAGCTGTGTTTCTTTCACTG 122
Query 119 TATCTCAGATTCCTTGTTTTTG-TTTTTGTTCTACATGGGAGCCAGATTTTCGCGTATAG 177
||||| ||| |||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 123 TATCTAAGA-TCCTTGTTTTTGTTTTTTGTTCTACATGGGAGCCAGATTTTCACGTATAG 181
Query 178 CGAAAAGGTTTCTTCCTAAAAGTAAAGTAAGGATTTTGATGGTGGGTCTTGATGGTTCAG 237
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 182 CGAAAAGGTTTCTTCCTAAAAGTAAAGTAAGGATTTTGATGGTTGGTCTTGATGGTTCAG 241
Query 238 GGAAGACTACCATTCTTTACAAGCTGAAGCTTGGAGAGGTTGTCACAACAGTGCCTACTA 297
||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 242 GGAAGACTACCATCCTTTACAAGTTGAAGCTTGGAGAAGTTGTCACAACAGTGCCTACTA 301
Query 298 TCGGGTTCAACCTCGAGACAGTAGAATACAAAGGCATCAATTTCACTGTATGGGATATAG 357
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TTGGTTTCAACCTCGAGACAGTAGAATACAAAGGCATCAATTTCACTGTATGGGATATAG 361
Query 358 GAGGACAAGAGAAGATTCGTAAACTGTGGAGACACTATTTCCAGAACGCACAGGGGCTTA 417
||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |
Sbjct 362 GAGGACAAGAGAAGATTCGCAAATTGTGGAGACACTATTTCCAGAACGCGCAGGGGCTCA 421
Query 418 TCTTTGTGGTGGACAGCAGTGATAGTGAAAGGATATCAGAAGCTCGAAACGAGCTGCATC 477
||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 422 TCTTTGTAGTGGACAGCAGCGATAGTGAAAGGTTATCAGAAGCTCGAAACGAGCTGCATC 481
Query 478 GCATACTAACCGATAATGAACTAGAAGGTGCATGTGTACTCGTCTTTGCGAACAAGCAAG 537
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 482 GCATACTAACCGATAATGAACTAGAAGGTGCATGTGTACTTGTCTTTGCGAACAAGCAAG 541
Query 538 ATTCAAGAAATGCTTTACCCGTAGCCGAGGTTGCCAACAAACTTGGTCTACACAGCCTAT 597
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 542 ATTCGAGAAATGCTTTACCTGTAGCCGAGGTTGCCAACAAACTTGGTCTACACAGCCTAT 601
Query 598 CCAAACGTTGTTGGCTTATACAAGTAACCTCAGCCATCTCTGGGCAAGGATTATACGAAG 657
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 602 CCAAACGTTGTTGGCTTATACAAGGAACCTCAGCTATCTCTGGGCAAGGATTATACGAAG 661
Query 658 GACTTGAATGGCTATCCACAACAATCCCGATCAAACCCGAACGGTCTACTTCGGTTGGTA 717
||||||| |||||||| ||||||||||| | ||||||||||||||||||||||||| |||
Sbjct 662 GACTTGAGTGGCTATCGACAACAATCCCCAACAAACCCGAACGGTCTACTTCGGTTAGTA 721
Query 718 GTTTCCGGAACAATTCCTATGAGAGGAAGCTGGTACGAGGTCCGAGGTATTAAAAGTCTG 777
||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 722 GTTTCCGGAGTGATTCCTATGAGAGGAAGCTGGTCCGAGGTCCGAGGTATTAAAAG---G 778
Query 778 AAGGCTTTGAATTGGTTATTCCAATGTAGAAAACGGAACGTACCA-AATATCACAAGTGT 836
|||| ||| ||||| ||||| ||| ||||| ||||| |||| || | |||||||
Sbjct 779 ----CTTTAAAT-GGTTACTCCAACGTAAAAAACAGAACGCACCAGAA-AGGGCAAGTGT 832
Query 837 GTTTTTGTACTAGCTTGTTTGGTACACTC-CGG-TTGGTACGAGCAACCAAAATAGCTCT 894
||||||||||||||||||||||| || | | | || |||||||||||||||||||||||
Sbjct 833 ATTTTTGTACTAGCTTGTTTGGTATACGCTCTGATTCGTACGAGCAACCAAAATAGCTCT 892
Query 895 CTTCTTCGTTCTATGTATTTGTATGATTATGGCGTTTTGTTTTCAATGTTTCTCAATGAG 954
||||| |||||||| ||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 893 CTTCTGCGTTCTAT--ATTTGTATGATTATGTTGTTTTGTTTTCAATGTTTCTCATTGAG 950
Query 955 AACCATACTTGACTATTACTCATATTATTGAGTGAATAAGGTTTT-TAGGGTATATATCT 1013
||||||| |||||||||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct 951 AACCATATTTGACTATTACTCATATTATGGTGTGAATAAGGTTTTCTAGGGTATATATCT 1010
Query 1014 TTACG 1018
|||||
Sbjct 1011 TTACG 1015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49882507971
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5