BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480402
Length=410
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15340.1 | Symbols: | glycine-rich protein | chr2:6677287-6... 322 2e-87
> AT2G15340.1 | Symbols: | glycine-rich protein | chr2:6677287-6677819
FORWARD LENGTH=533
Length=533
Score = 322 bits (174), Expect = 2e-87
Identities = 215/234 (92%), Gaps = 5/234 (2%)
Strand=Plus/Plus
Query 1 CTTTGTTCTATAATTAAACAAACACACATAAGAAAAACAAAAACTATGGCTCTCTCTGGT 60
|||||||||||||||||||||| || |||||||| || |||||| |||||||||||||||
Sbjct 9 CTTTGTTCTATAATTAAACAAA-ACTCATAAGAAGAAGAAAAACGATGGCTCTCTCTGGT 67
Query 61 TCGCAAAAGAAGTTTTTTCTACTTGTTCTAGCCATTGCATGTCTCTCCTCTTCT-TGTGC 119
|||||||||||| |||| ||||||||| |||||||||||||||||||||||||| | |||
Sbjct 68 TCGCAAAAGAAGGTTTTCCTACTTGTTATAGCCATTGCATGTCTCTCCTCTTCTCT-TGC 126
Query 120 AGAGGCGTGGAGCTGGAGTTCGAGTAACGGCAACGGTTGGGGATGGGGATCTGATGGCTC 179
||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||
Sbjct 127 AGAGGCGTGGAGCTGGAGTTCTAGTGACGGCAACGGCTGGGGATGGGGATCTGATGGCTC 186
Query 180 TAGCACCTCTACCTCAGGTCCTGGTTCAAACAC-TGGCGATTCAAACTCTGGCG 232
|||||||||||||||||| || ||||||| | | ||| ||||||||||||||||
Sbjct 187 TAGCACCTCTACCTCAGGCCCAGGTTCAA-CTCCTGGTGATTCAAACTCTGGCG 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19403351114
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5