BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480409
Length=1058
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15430.1 | Symbols: RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A |... 1657 0.0
AT2G15400.1 | Symbols: RBP36B, NRPE3B | DNA-directed RNA polyme... 1387 0.0
> AT2G15430.1 | Symbols: RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A
| DNA-directed RNA polymerase family protein | chr2:6733566-6735675
FORWARD LENGTH=1248
Length=1248
Score = 1657 bits (897), Expect = 0.0
Identities = 1008/1062 (95%), Gaps = 6/1062 (1%)
Strand=Plus/Plus
Query 1 ATCTTCTTCTCCGGCGAAGAAATTGAAAAGTCATTATCCCTAAAACCCTAATAAAGCT-C 59
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||| | |
Sbjct 1 ATCTCCTTCTCCGGCGAAGAAATTGAAAATTCATTATCCCTAAAACCCTAATAAAGGTCC 60
Query 60 A-ACACTCGTCAGAAACCACCGAGCAGCTTCTGCAATGGACGGTGCCACATACCAAAGAT 118
| | | ||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 61 AGAGAGTCGTCAGAAACCACCGATTAGCTTTTGAAATGGACGGTGCCACATACCAAAGAT 120
Query 119 TCCCAAAGATCACGATCCGTGAGCTTAAAGATGACTACGCCAAGTTCGAGCTTCGCGAAA 178
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 121 TCCCAAAGATCAAGATCCGTGAGCTTAAAGATGATTACGCCAAGTTCGAGCTTCGTGAAA 180
Query 179 CCGACGTATCCATGGCCAACGCTCTCCGTCGCGTTATGATCTCCGAAGTCCCAACTGTAG 238
||||||| || ||||||||||||||||||||||| ||||||||||||||||| || || |
Sbjct 181 CCGACGTTTCTATGGCCAACGCTCTCCGTCGCGTAATGATCTCCGAAGTCCCTACCGTCG 240
Query 239 CAATAGATCTCGTCGAAATCGAAGTTAATTCGTCTGTTCTCAACGACGAGTTCATTGCTC 298
|||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 241 CAATAGATCTAGTCGAAATCGAGGTTAATTCATCTGTACTCAACGACGAGTTCATTGCTC 300
Query 299 ATCGATTAGGTCTCATTCCTCTCACTAGCGAGCGTGCTATGAGCATGCGGTTCTCTCGAG 358
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 301 ATCGATTAGGTCTCATTCCTCTCACTAGCGAACGTGCTATGAGCATGCGTTTCTCTCGAG 360
Query 359 ATTGTGATGCTTGTGATGGAGATGGACAATGCGAGTTTTGCTCTGTTGAGTTTCGGCTTA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTGTGATGCTTGTGATGGAGATGGACAATGCGAGTTTTGCTCTGTTGAGTTTCGGCTTA 420
Query 419 GTGCTAAGTGTGTTACTGACCAAACCCTAGATGTTACTAGTCGGGATTTGTACAGTGCTG 478
|| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 GTTCTAAGTGTGTTACTGATCAAACCCTAGATGTTACTAGTAGGGATTTGTACAGTGCTG 480
Query 479 ATCCTACTGTTACTCCTGTTGATTTCACTATTGACTCGTCTGCT-TCTGATTCAAGCGAG 537
||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||
Sbjct 481 ATCCTACTGTTACTCCTGTGGATTTCACTATTGACTCGTCTG-TATCTGATTCAAGCGAG 539
Query 538 CAAAAGGGAATTATCATTGTGAAACTGCGTCGGGGACAAGAGTTGAAGCTTAGGGCGATA 597
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 CACAAGGGAATTATCATTGTGAAACTGCGTCGGGGACAAGAGTTGAAGCTTAGAGCGATA 599
Query 598 GCGAGGAAAGGGATTGGAAAAGATCATGCGAAATGGTCTCCTGCAGCTACTGTTACGTTT 657
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCGAGGAAAGGGATTGGGAAAGATCATGCGAAATGGTCTCCTGCAGCTACTGTTACGTTT 659
Query 658 ATGTATGAGCCTGACATAATTATCAATGAAGATATGATGGACACTTTGTCAGACGAGGAA 717
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 660 ATGTATGAGCCTGACATAATTATTAATGAAGATATGATGGATACTTTGTCAGACGAGGAA 719
Query 718 AAAATCGACTTGATTGAGAGCAGTCCTACCAAAGTGTTTGGCATTGACCCAGTCACCAGA 777
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 720 AAGATCGACTTGATTGAGAGCAGTCCTACCAAAGTGTTTGGCATGGATCCAGTCACCAGA 779
Query 778 CAGGTTGTGGTCGTTGATCCTGAAGCATACACTTACGATGAAGAAGTGATCAAGAAAGCT 837
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CAGGTTGTAGTGGTTGATCCTGAAGCATACACTTACGATGAAGAAGTGATCAAGAAAGCT 839
Query 838 GAAGCAATGGGGAAACCGGGACTCATTGAGATCCA-TCCGAAAGATGATAGTTTTATATT 896
||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||
Sbjct 840 GAAGCAATGGGGAAACCGGGACTCATTGAGATC-AGTCCGAAAGATGACAGTTTTATATT 898
Query 897 CACTGTTGAATCCACAGGTGCAGTGAAGGCTTCCCAGCTGGTGCTAAATGCGATAGATAT 956
||||||||| |||||||||||||||||||||||||| ||||| |||||||| || ||| |
Sbjct 899 CACTGTTGAGTCCACAGGTGCAGTGAAGGCTTCCCAACTGGTACTAAATGCCATTGATCT 958
Query 957 CCTGAAGCAGAAGCTTGATGCAGTCCGTCTCTCAGATGACACTGTAGAAGCCGATGATCA 1016
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 959 TCTGAAGCAGAAGCTTGATGCAGTCCGTCTCTCAGATGACACCGTAGAAGCGGATGATCA 1018
Query 1017 GTTTGGTGAACTCGGTGCCCATATGCGTGGAGGATGAACTCA 1058
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GTTTGGTGAACTCGGTGCCCATATGCGTGGAGGATGAACTCA 1060
> AT2G15400.1 | Symbols: RBP36B, NRPE3B | DNA-directed RNA polymerase
family protein | chr2:6712936-6714586 FORWARD LENGTH=1246
Length=1246
Score = 1387 bits (751), Expect = 0.0
Identities = 958/1056 (91%), Gaps = 22/1056 (2%)
Strand=Plus/Plus
Query 2 TCTTCTTCTCCGGCGAAGAAATTGAAAAGTCATTATCCCTAAAACCCTAATAAAGCTCAA 61
|||||||||||||||||||||| |||||||||||| |||| || | | | | |
Sbjct 11 TCTTCTTCTCCGGCGAAGAAATCGAAAAGTCATTA-CCCT--AA---GAGT----C-CCA 59
Query 62 CACTCGTCAGAAACCACCGAGCAGCTTCTGCAATGGACGGTGCCACATACCAAAGATTCC 121
| ||||||| | | || |||||| || ||||||||||| ||| |||||||||||||
Sbjct 60 GAGTCGTCAG--A--A-GGAACAGCTTTTGAAATGGACGGTGTCACCTACCAAAGATTCC 114
Query 122 CAAAGATCACGATCCGTGAGCTTAAAGATGACTACGCCAAGTTCGAGCTTCGCGAAACCG 181
||| | | | |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 115 CAACGGTGAAGATCCGTGAGCTTAAAGATGACTACGCCAAGTTCGAGCTTCGTGAAACCG 174
Query 182 ACGTATCCATGGCCAACGCTCTCCGTCGCGTTATGATCTCCGAAGTCCCAACTGTAGCAA 241
|||| || ||||||||||||||||||||||| ||||||||||||||||| || | ||||
Sbjct 175 ACGTTTCAATGGCCAACGCTCTCCGTCGCGTAATGATCTCCGAAGTCCCCACCATGGCAA 234
Query 242 TAGATCTCGTCGAAATCGAAGTTAATTCGTCTGTTCTCAACGACGAGTTCATTGCTCATC 301
| |||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 235 TCCATCTCGTCAAAATCGAGGTTAATTCCTCTGTTCTCAACGACGAGTTCATTGCTCAAC 294
Query 302 GA-TTAGGTCTCATTCCTCTCACTAGCGAGCGTGCTATGAGCATGCGGTTCTCTCGAGAT 360
|| ||| ||||||| ||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 295 GACTTA-GTCTCATCCCTCTCACTAGCGAGCGTGCTATGAGCATGCGGTTCTGTCAAGAT 353
Query 361 TGTGATGCTTGTGATGGAGATGGACAATGCGAGTTTTGCTCTGTTGAGTTTCGGCTTAGT 420
||||| | |||| ||||||||| ||| |||||||| |||||||||||||||| ||||||
Sbjct 354 TGTGAAGATTGTAATGGAGATGAACATTGCGAGTTCTGCTCTGTTGAGTTTCCCCTTAGT 413
Query 421 GCTAAGTGTGTTACTGACCAAACCCTAGATGTTACTAGTCGGGATTTGTACAGTGCTGAT 480
||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 414 GCTAAGTGTGTTACTGACCAAACCCTAGATGTTACTAGTAGGGATCTCTACAGTGCTGAT 473
Query 481 CCTACTGTTACTCCTGTTGATTTCACTATTGACTCGTCTGCTTCTGATTCAAGCGAGCAA 540
|||||||||||||||||||||||||||| | |||| ||| |||||||||||||||||||
Sbjct 474 CCTACTGTTACTCCTGTTGATTTCACTAGTAACTCATCTACTTCTGATTCAAGCGAGCAC 533
Query 541 AAGGGAATTATCATTGTGAAACTGCGTC-GGGGACAAGAGTTGAAGCTTAGGGCGA-TAG 598
|||||||||||||||| |||||| || | ||||||||||||||||||||| || | |||
Sbjct 534 AAGGGAATTATCATTGCGAAACTACG-CAGGGGACAAGAGTTGAAGCTTAAAGC-ATTAG 591
Query 599 CGAGGAAAGGGATTGGAAAAGATCATGCGAAATGGTCTCCTGCAGCTACTGTTACGTTTA 658
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 592 CTAGGAAAGGAATTGGGAAAGATCATGCGAAATGGTCTCCTGCAGCTACTGTTACGTATA 651
Query 659 TGTATGAGCCTGACATAATTATCAATGAAGATATGATGGACACTTTGTCAGACGAGGAAA 718
|||||||||||||||| |||||||||||||| |||||| |||||||| |||| |||||||
Sbjct 652 TGTATGAGCCTGACATTATTATCAATGAAGAGATGATGAACACTTTGACAGATGAGGAAA 711
Query 719 AAATCGACTTGATTGAGAGCAGTCCTACCAAAGTGTTTGGCATTGACCCAGTCACCAGAC 778
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 712 AAATTGACTTGATTGAGAGCAGTCCTACCAAAGTGTTTGGCATTGACCCAGTCACCGGAC 771
Query 779 AGGTTGTGGTCGTTGATCCTGAAGCATACACTTACGATGAAGAAGTGATCAAGAAAGCTG 838
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 AGGTTGTGGTGGTTGATCCTGAAGCATACACTTACGATGAAGAAGTGATCAAGAAAGCTG 831
Query 839 AAGCAATGGGGAAACCGGGACTCATTGAGATCCATCCGAAAGATGATAGTTTTATATTCA 898
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 832 AAGCAATGGGGAAACCGGGACTCATTGAGATCCATCCGAAACATGATAGTTTTGTATTCA 891
Query 899 CTGTTGAATCCACAGGTGCAGTGAAGGCTTCCCAGCTGGTGCTAAATGCGATAGATATCC 958
||||||| |||||||||||| |||||||||| |||||||| |||||||| || |||||||
Sbjct 892 CTGTTGAGTCCACAGGTGCATTGAAGGCTTCTCAGCTGGTACTAAATGCCATTGATATCC 951
Query 959 TGAAGCAGAAGCTTGATGCAGTCCGTCTCTCAGATGACACTGTAGAAGCCGATGATCAGT 1018
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 952 TGAAGCAGAAGCTTGATGCAATCCGTCTCTCAGATAACACTGTAGAAGCCGATGATCAGT 1011
Query 1019 TTGGTGAACTCGGTGCCCATATGCGTGGAGGATGAA 1054
||||||||||||||||||||||||||| ||||||||
Sbjct 1012 TTGGTGAACTCGGTGCCCATATGCGTGAAGGATGAA 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51806962440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5