BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480415
Length=1923
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15560.1 | Symbols: | Putative endonuclease or glycosyl hyd... 2660 0.0
> AT2G15560.1 | Symbols: | Putative endonuclease or glycosyl hydrolase
| chr2:6787869-6790101 REVERSE LENGTH=2091
Length=2091
Score = 2660 bits (1440), Expect = 0.0
Identities = 1755/1903 (92%), Gaps = 37/1903 (2%)
Strand=Plus/Plus
Query 1 ATATGCTTTCTCTGGACAAACGCAAAAACTTTTGAAGAACCCTAAAAA-TCCCAAAATCC 59
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 2 ATATGCTTTCTCTGGACAAACGCAAAAACTTTTGTAGAACCCTAAAAATTCCCAAAATCC 61
Query 60 GCCGAAGAAGAAGATCGAGAAGAATCAACTACTAATCTGAAGAATTCGCGAAATTCCATC 119
| || |||||||||||||||||||||||| |||||||||||||||| | ||||||| ||
Sbjct 62 GTCGGAGAAGAAGATCGAGAAGAATCAACAACTAATCTGAAGAATTTTCCAAATTCCGTC 121
Query 120 TTCGTATCGTCTACG-CCT-GTGTATTCAATCT-TCAAG-ATCCGGAGCCTTTGATGATA 175
||||||||||||||| | | || || ||| | | ||| ||| ||||||||||||
Sbjct 122 TTCGTATCGTCTACGAGATCCT-TA-TC--TCTCCCCTGAATCTGGAACCTTTGATGATA 177
Query 176 CACAAA-GCTATGTCAAGTTATTATAATCCAT---CAGCAACAGCTTTAGTCTCTATTGA 231
|| ||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 178 CA-AAACGCTATGTCAAGTTATTATAATCCATCAGCAGCAACAACTTTAGTCTCTATTGA 236
Query 232 TTCTGATGAACAAAGAAGAATCAAATATTTAGCAGATTTGAACATGATTGCAACACAGAG 291
||| ||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||
Sbjct 237 TTCCGATGAACAAAGAAGAATCAAATACCTAGCGGATTTAAACATGATTGCAACACAAAG 296
Query 292 ACATTCTTCTACAGATGGTCCTATGGCTATTCTCTGGGATATGGAGAACTG-CCCTGTTC 350
||||||||||||||||||||||||||| |||||||||||||||||||| || ||| ||||
Sbjct 297 ACATTCTTCTACAGATGGTCCTATGGCCATTCTCTGGGATATGGAGAATTGTCCC-GTTC 355
Query 351 CTAGCGATGTACGTCCTGAAGATGTGGCTAGTAACATAAGAATGGCGATTCAGTTACATC 410
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 356 CTAGCGATGTACGTCCTGAAGATGTAGCTAGTAACATAAGAATGGCTATTCAGTTACATC 415
Query 411 CGGTGATATCCGGTCCGGTTGTTAACTTCTCGGCTTACGGAGATTTCAATGCTTTCCCTC 470
| |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 416 CTGTGATATCCGGTCCCGTTGTTAACTTCTCGGCTTACGGGGATTTCAATGGTTTCCCTC 475
Query 471 GTCGGGTTCGAGAAGGTTGTCAAAGAACCGGTGTGAAGCTTGTTGATGTACCAAATGGTA 530
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 476 GTCGGGTTCGAGAAGGTTGTCAAAGAACCGGTGTGAAGCTTATTGATGTACCAAATGGTA 535
Query 531 GGAAAGATGCATCTGATAAAGCGATTTTGATTGATATGTTCTTGTTTGTACTTGATAATA 590
|||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 536 GGAAAGATGCGTCGGATAAAGCGATTTTGATTGATATGTTCTTGTTTGTGCTTGATAATA 595
Query 591 AGCCGCCTGCGACTATTATTCTCGTATCGGGAGATGTTGATTTCGCGCCTGCGCTTCATA 650
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 596 AGCCGCCTGCGACTATCGTTCTCGTATCGGGTGATGTTGATTTCGCGCCTGCGCTTCATA 655
Query 651 TATTGGGTCAGCGTGGGTACACTGTGATTCTTGTTATACCTTCTAGTGTGTATGTGAACT 710
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 656 TATTGGGTCAGCGTGGGTATACTGTGATTCTTGTTATACCTTCTAGTGTGTATGTGAATT 715
Query 711 CAGCTTTGTCTAATGCTGGGAGGTTTGTTTGGGATTGGCATAGTATTGTTCACGGTGAAG 770
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 716 CAGCTTTGTCTAATGCTGGTAAGTTTGTTTGGGATTGGCATAGTATTGTTCACGGTGAAG 775
Query 771 GCTTTGTGCCGCTACGTAAACCTCGTGTTGTGCCATATCTTATGGGGTGTAATATCAGTG 830
|||||||||||| | |||||||||||||||| || |||||||||||||||||||| |||
Sbjct 776 GCTTTGTGCCGCGATGTAAACCTCGTGTTGTTCCGTATCTTATGGGGTGTAATATTGGTG 835
Query 831 ATAATAGTAACATGGATGGTATGAATGAAGATGAAACAATTCTCTATAGAGGTAACTGTT 890
|||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 836 ATAACAGTAACATGGATGGTTTGAATGAAGATGAAACTATTCTCTATAGAGGTAACTGTT 895
Query 891 ATAGTA---ACCCAAGAGAG---TCTTCCTTGATGGTTTCGAAGTTTCATAACGAGTATA 944
|||||| | ||||||||| |||||||||||||||||| |||||| ||| |||||||
Sbjct 896 ATAGTAGTGATCCAAGAGAGTCTTCTTCCTTGATGGTTTCGCAGTTTCGTAATGAGTATA 955
Query 945 GTAGCAGCGCAATGTCGTGTTGGCCATCTAATTCAGGCGAGTCTTTGGCATATCCTCCTC 1004
||||| | | |||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 956 GTAGCGGTGTAATGTCGTGTTGGCCATCTAATTCAGGCGAGTCTATGGCATGTCCTCCTT 1015
Query 1005 CTGGTCACCTTGAGTCCACCATGTGGGTAGCGCCGGGAGATTTAAACGGTTTGAAGGGAC 1064
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1016 CAGGTCACCTTGAGTCCACCATGTGGGTAGCGCCGGGAGATTTAAACGGTTTGAAGGGGC 1075
Query 1065 AGCTTGTGAAGCTGCTAGAGCTCTCAGGTGGATGTATTCCTCTCAAGCGTATTCCTTCTG 1124
|||| ||||||||||||||||| |||||||||||||||||||| | |||| |||||||||
Sbjct 1076 AGCTCGTGAAGCTGCTAGAGCTTTCAGGTGGATGTATTCCTCTTATGCGTGTTCCTTCTG 1135
Query 1125 AATACCAAAGGAATTTCAGTAAACCGCTTTTTGTATCGGACTACGGGGTG-CACAAGCTT 1183
|||||||| |||| |||||||||||||||||||||||||| || |||||| | |||||||
Sbjct 1136 AATACCAACGGAAATTCAGTAAACCGCTTTTTGTATCGGATTATGGGGTGGC-CAAGCTT 1194
Query 1184 GTGGATCTGTTCAAAAAGATGAGTGATGTGATTGCAGTGGATAGTAAAGGCAACAAGAGA 1243
|||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||
Sbjct 1195 GTGGATCTGTTCAAAAAGATGAGTGATGTGATTGTAGTTGATGGTAAAGGCAACAAGAGA 1254
Query 1244 ATTGTTTACCTGCGCAACTCCAAACCGAACGTCATCTCTCCGTCTCCCCCTGTGGTTCTA 1303
||||||||||||||||||| ||||||||| | |||||||| ||| ||||||||||||||
Sbjct 1255 TTTGTTTACCTGCGCAACTCGAAACCGAACATTATCTCTCCTTCTTCCCCTGTGGTTCTA 1314
Query 1304 CTGAGAAGAGAGAAGAAAGGAAAAGCGCCTAACGGGGAAACTACCAATGGAGGAGTCTCC 1363
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1315 CTGAGAAGAGAGAGGAAAGGAAAAGAGCCTAACGGGGTAACTACCAATGGAGGAGTCTCC 1374
Query 1364 TCTGATGAAATCTCAGACACGGGCTCGGTTCAGAGCGAGAGGAACCTCGAAGAGTTCAAA 1423
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1375 TCTGATGAAATGTCAGACACAGGCTCGGTTCAGAGCGAGAGGAACCTAGAAGAGTTCAAA 1434
Query 1424 TTCGAGCTACAAGACATTTTGGTGAGCTATTGTTGTGAGGTACAGATGGATTGTTTTGAG 1483
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1435 TTCGAGCTACAAGACATTTTGGTGAGCTATTGTTGTCAGGTACAGATGGATTGTTTCGAA 1494
Query 1484 GCGATATACAAGCTAAGGTACAAGAGGCCATTGCCCTACAAAAAGATGGGCGTGAATCAC 1543
||||||||||||||||||||||| ||||||||| |||||| ||| |||||||||||||||
Sbjct 1495 GCGATATACAAGCTAAGGTACAAAAGGCCATTGGCCTACACAAATATGGGCGTGAATCAC 1554
Query 1544 TTGGAGCAGCTCTTTGACAAGTTCAGGGATGTTGTTGCCATATATGAAGATCCAGCTACA 1603
||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||
Sbjct 1555 TTGGAGCAGCTCTTTGACAAGTTAAGGGATGTTGTTGCCATACATGAAGATCCTGCTACA 1614
Query 1604 GGGAGGAAACTCATCAACCCGGTTTAGGGGAGCCTAACTCAG-GTTCATATAAGATCAGA 1662
|||||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||
Sbjct 1615 GGGAGGAAACTCATCAGCCCGGTTTAAAGGAGCCTAACTCAGAGT-CATATAAGATCAGA 1673
Query 1663 CTTCAGACGGTGCGTTTGTGAGCCGTTTCTATGCGTTCTCTATCACTCACTGGGGACAAG 1722
| | | ||||||||||||| |||| || ||||||||||||||| |||||||||
Sbjct 1674 C----G--G-TGCGTTTGTGAGCTGTTTATAAGCGTTCTCTATCACT----GGGGACAAG 1722
Query 1723 CAATGTAAGCTCCTTGCCTGAGAAGCTCTCAGTATTAATGTATATGCTCTCTACTCTTTC 1782
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 CAATGTAAGCTCCTTGCCTAAGAAGCTCTCAGTATTAATGTATATGCTCTCTACTCTTTC 1782
Query 1783 CTTAGGACAAAATGTTTACACGGAAGCTTTGATTCTGCATTGCAAGCATTTCACTTCTGT 1842
||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 1783 CTTGGGACAAAATGTTTTCGCGGAAGCTATGATTCTGCATTGCAAGCATTTCACTTCTGT 1842
Query 1843 TACTTTCGAGAAATTGGAAAGAAGTCAGACGGAACGTTTTATG 1885
|||||||||| ||||||||| |||||||||||| |||||||||
Sbjct 1843 TACTTTCGAGCAATTGGAAATAAGTCAGACGGAGCGTTTTATG 1885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95230433865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5