BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480416
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15570.2 | Symbols: ATHM3, ATM3, TRX-M3, GAT1 | Thioredoxin ... 955 0.0
> AT2G15570.2 | Symbols: ATHM3, ATM3, TRX-M3, GAT1 | Thioredoxin
superfamily protein | chr2:6791290-6792933 REVERSE LENGTH=822
Length=822
Score = 955 bits (517), Expect = 0.0
Identities = 683/759 (90%), Gaps = 28/759 (4%)
Strand=Plus/Plus
Query 1 tctttttcttctc-aa--a-tcttcaatggcgatttcttcttcttcttcGTCCTCCTCTA 56
|||| |||||||| || | ||||||||||||| | ||||||||| | ||||||||||
Sbjct 6 TCTTCTTCTTCTCAAATCACTCTTCAATGGCGA--T-TTCTTCTTC-T--TCCTCCTCTA 59
Query 57 TATGTTTTAACTCCACTCGATCGCACACAGCTCG-CCTGATTTCATCTCCGTCGCGTCTC 115
||||||| ||| ||||||||| ||||||||||| | | |||||||||||||||||||||
Sbjct 60 TATGTTTCAACCCCACTCGATTTCACACAGCTCGACAT-ATTTCATCTCCGTCGCGTCTC 118
Query 116 TTCCCAGTCACCAGCTTCACCCCTCGCGCTCTCC-TTCTCTCCGATAGACGATCTCTCCT 174
|||||||||||||||||| |||||||| |||||| || ||||||| ||||||||||||||
Sbjct 119 TTCCCAGTCACCAGCTTCTCCCCTCGCTCTCTCCGTT-TCTCCGACAGACGATCTCTCCT 177
Query 175 ATCTTCCTCCGCCTCTCGCCACCGTCTCTT-TCCTCTCTGCGTTCATGATTCTC--G-AG 230
|||||||||||||||||||| |||||| || |||||| ||||||| |||||||| | ||
Sbjct 178 ATCTTCCTCCGCCTCTCGCCTCCGTCT-TTCTCCTCTATGCGTTCGTGATTCTCGAGCAG 236
Query 231 CAGCTGAAGTTACAGAACAATCATGGGAAGACTCAGTCCTCAAAAGCGAAACGCCTGTGC 290
|||||||||||||| ||| |||||||||||||||||| || ||||||||||| || |||
Sbjct 237 CAGCTGAAGTTACACAACGATCATGGGAAGACTCAGTTCTAAAAAGCGAAACCCCGGTGT 296
Query 291 TAGTAGAATTCTACACAAGTTGGTGCGGTCCATGTCGGATGGTCCACAGGATAATAGACG 350
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TAGTAGAATTCTACACGAGTTGGTGCGGTCCATGTCGGATGGTCCACAGGATAATAGACG 356
Query 351 AAATAGCATTGGACTATGCCGGAAAACTAAACTGTTATGTCCTGAACGCAGACAATGACT 410
|||||||| ||||||||| |||||||||||||| ||| |||| || |||||||||||||
Sbjct 357 AAATAGCAGGGGACTATGCTGGAAAACTAAACTGCTATCTCCTTAATGCAGACAATGACT 416
Query 411 TGCCGGTGGCTGAAGAGTACGAGATAAAGGCTGTGCCAGTAGTACTGATTTTCAAGAACG 470
||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||
Sbjct 417 TGCCGGTGGCTGAAGAGTACGAGATAAAGGCTGTGCCGGTAGTTCTGCTCTTCAAGAACG 476
Query 471 GGGAGAAACGAGAGTCCATCATGGGTACAATGCCTAAAGAGTTCTACATTTCCGCCATTG 530
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 477 GGGAGAAACGAGAGTCAATCATGGGTACAATGCCTAAAGAGTTCTATATTTCCGCCATTG 536
Query 531 AAAGAGTCTTGAACTCATGAAGAAGGTAACA-TCATTGATGAAGAAGACCTCTCACTACC 589
||||||||||||||||||||||||||||||| || ||||||| ||| | ||||||||||
Sbjct 537 AAAGAGTCTTGAACTCATGAAGAAGGTAACAATCGTTGATGA-GAA--C-TCTCACTACC 592
Query 590 ACTTTGATCAAAGATATTGTTTGGTTA-AT-ATCAGAATCGCTCCATTTCGATATGGTTG 647
|||||||| ||| |||||||| || | || |||| ||||||||||| |||||||||||
Sbjct 593 ACTTTGATTAAAAATATTGTT-GGA-AGATTATCATCATCGCTCCATTGCGATATGGTTG 650
Query 648 ATATCtttttttCTTCTTTTATTCTCTGTGAATATAACTTTTGGGTTTGTGGAAATATGG 707
|| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| || |
Sbjct 651 ATGTCTTTGTTTCTTCTTTTATTCTCTGTGAATATAACTGTTGGGTTTGTGGAAAGATAG 710
Query 708 CTCAAGAAGTATTGTGAATACATATATCTTCCTTCTTCT 746
|||| ||||||||||||||||||| || |||||||||||
Sbjct 711 CTCAGGAAGTATTGTGAATACATAAATATTCCTTCTTCT 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36218819987
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5