BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480417
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15580.1 | Symbols: | RING/U-box superfamily protein | chr2... 952 0.0
> AT2G15580.1 | Symbols: | RING/U-box superfamily protein | chr2:6797638-6798939
FORWARD LENGTH=764
Length=764
Score = 952 bits (515), Expect = 0.0
Identities = 634/690 (92%), Gaps = 13/690 (2%)
Strand=Plus/Plus
Query 1 TATGGCTGGTATGCTTCCCGGAGTCGAGTGTGCAAGGAGGCGACGCTTCCACGGTGGTGC 60
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 49 TATGGCTGGTATGCTTCCCGGAGTTGAGTGTGCAAGGAGGCGGCGCTTCCACGGTGGTGC 108
Query 61 TACC-CCGATTGAATCCAAGAACAC-G--GCTGTGGCGGCAGCAGCAGGACACGTCTGGA 116
| || |||||||||||| |||||| | |||||||||| || || |||||||||||||
Sbjct 109 T-CCTCCGATTGAATCCTCGAACACAGCTTCTGTGGCGGCTGCGGCGGGACACGTCTGGA 167
Query 117 CGCGGCGACCATCGTTCTCTCTTTACACTACCAATTATGAGAGCCACCAGGCCCATGTCT 176
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 168 CACGGCGACCATCGTTCTCTCTTTACACTACCAATCATGAGAGCCACCAGGCCCATGTCT 227
Query 177 CCTTCTCGGAGAGAAGTGTTAGGAACATATCTTATGGAGAAGACAACGATGAGAAACTTG 236
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 228 CCTTCTCGGAGAGAAGTGTTAGGAATAAATCTTATGGAGAAGACAACGATGAGAAACTTG 287
Query 237 ACGGAGCAGCCAAAGAGGCAAAGCAGAGGCTGAACGAA-CGGCTGAGAATCCCGCGGCGT 295
||||||||||||||||||||||||||||||| ||| || |||||||||||||| | |||
Sbjct 288 ACGGAGCAGCCAAAGAGGCAAAGCAGAGGCTTAAC-AAGCGGCTGAGAATCCCACCACGT 346
Query 296 ACGAGGCAAAATGATAAAGACAGAGGGAATAAATTGGAGCAAGGAAAAGGTAAAGCGCCC 355
|| |||||||||| |||||||| |||||||||||||||||||||||| |||||| | | |
Sbjct 347 ACAAGGCAAAATGGTAAAGACAAAGGGAATAAATTGGAGCAAGGAAAGGGTAAACCTCTC 406
Query 356 GGGG-CGTTACCGACAGAGGTGATCGGGTTAAAGAAGAGTCGAGGAAGGTTGATCGAATG 414
|||| | |||||||| |||||| |||||||||||||||| |||||||||||||| |||||
Sbjct 407 GGGGAC-TTACCGACCGAGGTGGTCGGGTTAAAGAAGAGCCGAGGAAGGTTGATGGAATG 465
Query 415 GTTCAAGTGGAGAGTTAGGGAACAACAAGATTGTGCTATATGTCTAGACCTGTTCGAGAA 474
||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 466 GTTCAAGCGGCGAGTTAGGGAACAACAAGATTGTGCTATATGTCTAGACCGGTTCAAGAA 525
Query 475 GGGTGAGACCTTGGTGCACCTACCATGTGCCCATAAGTTTCACTCC-TCATGTTTATTGC 533
||||||||||||||| |||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 526 GGGTGAGACCTTGGTACACCTACCATGTGCCCATAAGTTTCACTCCAT-ATGCTTATTGC 584
Query 534 CTTGGCTAGACACCAATGTTTATTGCCCATATCGTAGAACGGATATTTGGAATTAAATGT 593
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 585 CTTGGCTAGACACCAATGTTTATTGCCCATATTGTAGAACTGATATTTGGAATTAAATGT 644
Query 594 AATATTTTA-ATGTCATATTTCGAGGTGTTGTTT-ATGGCTAATCTTAGATTTTAGGAAT 651
||||||| ||||||||||||||| |||| ||| |||||| ||||||| ||||||||||
Sbjct 645 TATATTTTTGATGTCATATTTCGAGATGTTTTTTTATGGCTTATCTTAGGTTTTAGGAAT 704
Query 652 TTAAACATAAATTGACTAGCGCGATCAATA 681
||||||||||| |||||||||| |||||||
Sbjct 705 TTAAACATAAAATGACTAGCGCAATCAATA 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5