BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480419
Length=581
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15590.2 | Symbols: | Protein of unknown function (DUF1685)... 880 0.0
> AT2G15590.2 | Symbols: | Protein of unknown function (DUF1685)
| chr2:6801943-6802618 FORWARD LENGTH=587
Length=587
Score = 880 bits (476), Expect = 0.0
Identities = 546/581 (94%), Gaps = 0/581 (0%)
Strand=Plus/Plus
Query 1 AATGTCGAACCACGCGCAACAGCCTCCAAGACCTCTGATGAAGCAACACTCGTGGTCACC 60
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 7 AATGTCGAACCACGCGCCACAGCCTCCAAGACCTCTGATGAAGCAATACTCGTGGTCACC 66
Query 61 GGACATGAATCGCGAAGAGGCTTGGCTGCGTAAGAAAAAGAAACGCCCACTGGATCTCCT 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 GGACATGAGTCGCGAAGAGGCTTGGCTGCGTAAGAAAAAGAAACGCCCACTGGATCTCCT 126
Query 121 TCCTCGCAGCAAGAGTGTCACAAACGACGATATCGAGGAGCTTAAAGGCTGCTTCGAGCT 180
||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||
Sbjct 127 TCCTCGCAGCAAGAGTGTCACGAATGATGATATCGAGGAGCTTAAAGGCTGTTTCGAGCT 186
Query 181 TGGGTTTGGGTTTGAAACAGAATCTCCTGATTTGAATCCAAGGCTCTCCCTTACAATACC 240
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 187 TGGTTTTGGGTTTGAAACAGAATCTCCTGATTTGAATCCAAGGCTCTCCCATACAATCCC 246
Query 241 CGCTCTCGATTTGTATTGCGCGGTTCATAGACAGTACAGCAACCATTTGTCTAGAACGTC 300
|||||| ||| |||| ||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 247 CGCTCTTGATCTGTACTGCGCGGTTCATAGACAATACAGCAACCATTTGTCTCGGACGTC 306
Query 301 TTCATTCGCGTCGGAACATGAAGTCAGCAACTCCAACAGCACCACAACCATCGTCGACAA 360
||||||||||||||| |||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 307 TTCATTCGCGTCGGATCATGAAGTCAGCAACTCCAACAACATCACGACCATCGTCGACAA 366
Query 361 AGGTGATGACCGTAAGACGATGAAGCAGAAGCTGAAACAATGGGCTAAGGTGGTCGGGTT 420
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 367 AGGTGATGATCGGAAGACGATGAAGCAGAAGCTGAAACAATGGGCTAAGGTGGTAGGGTT 426
Query 421 TACGGTGCGGCACTCTTCCGGGAAACACAAATTGATGTCAGAAGAATGACAGTTTTGTAA 480
| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 427 TTCGGTGCGGCACTCTTCCGGAAAACCCAAATTGATGTCAGAAGAATGACAGTTTTGTAA 486
Query 481 TATAATGTTAACAAACACTAAAATGTTTAATATATGAATGTTAGTGGATAAGACACCGTC 540
||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 487 TATAAAGTTAACAAACACTAAAATGTTTAGTATTTGAATGTTAGTGGATAAGACACCGTC 546
Query 541 TTGTCAAAGTTTATGTGAACCGATTAAAAGAAAAATTATCG 581
|| | |||||||||| |||| |||||||||||| ||||||
Sbjct 547 TTATTAAAGTTTATGAAAACCAATTAAAAGAAAATTTATCG 587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27930185732
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5