BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480422
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15630.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2721 0.0
> AT2G15630.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:6814521-6816404 FORWARD LENGTH=1884
Length=1884
Score = 2721 bits (1473), Expect = 0.0
Identities = 1737/1864 (93%), Gaps = 19/1864 (1%)
Strand=Plus/Plus
Query 1 ATGAGACAAATCACATTCCCCTGCATCTTACGCCACCGAATCTCTATTCTTTCCGGCGCC 60
||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGAGACGTTTCACAGTCCCCTGTATCTTACGCCACCGAATCTCAATTCTTTCCGGCGCC 60
Query 61 GGCTATTATCCTACCGCCGCACGTCTCTCTTCTTTGGCCCAAACATCCACCAC-CACCGA 119
||||||| |||| ||||||| ||||| || ||||| || ||||||| || || | ||||
Sbjct 61 GGCTATTCTCCTGCCGCCGCTCGTCTTTCCTCTTTAGCACAAACAT-CA--ACTC-CCGA 116
Query 120 GTCA-CAGTTACCGCCAATAACTTCTGAAGTTTTGCTCGAGTCGATAAAATCCTCTCAGT 178
|||| | |||||||| |||||||||||| |||||||||||||||||| ||| |||||||
Sbjct 117 GTCAGTA-TTACCGCCGATAACTTCTGAAATTTTGCTCGAGTCGATAAGATCTTCTCAGT 175
Query 179 GGCATTTCATCGAACACGTTACGGACAAACTCACACCTAC-CATTGTATCAACAACTCTT 237
||||| || ||||||||||| | ||||||||||||||| | | ||||||| ||||||||
Sbjct 176 GGCATATCGTCGAACACGTTGCAGACAAACTCACACCTTCGC-TTGTATCTACAACTCTA 234
Query 238 CTCAGCCTCGTCAAGACTCCTGATTTAGCCTTCAATTTCGTCAACCACATCGATCTTCGT 297
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct 235 CTCAGCCTCGTCAAGACTCCTAATTTAGCCTTCAATTTCGTCAACCACATCGACCTTTAT 294
Query 298 TGCCTGGACTTTCAAACACAGTGTCTAGCCATTGCTGTCGTCTCCAAGCTCTCTTCTCCG 357
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 295 CGCCTGGACTTTCAAACACAGTGTCTAGCCATCGCTGTCATCTCCAAGCTCTCTTCTCCA 354
Query 358 AAATCTGTTACTCAGTTGCTGAAAGAAGTCGTTAGTACTCGTAAGAACTCAGTAAGAGAC 417
||| | ||||||||||| |||||||||||||||| | |||||||||||||| ||||| ||
Sbjct 355 AAACCCGTTACTCAGTTACTGAAAGAAGTCGTTACTTCTCGTAAGAACTCAATAAGAAAC 414
Query 418 CTTTTCGATGAATTGGTGCTTGCCCATGATCGATTACAGACTAAAAGCACGATCCTTTTC 477
|||||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||||||
Sbjct 415 CTTTTCGATGAATTAGTGCTTGCCCATGATCGATTAGAGACGAAAAGCACGATTCTTTTC 474
Query 478 GACT-TCATGGTCAGATTTTACTGTCAATTGAGAATGGTAGATGAAGCCATAGAGTGCTT 536
|| | || | ||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 475 GA-TCTCTTAGTCAGATGTTGTTGTCAATTGAGAATGGTTGATGAAGCCATAGAGTGCTT 533
Query 537 TTACCTGATGAAGGAGAAAGGTTTTGATCCCAAAACTGAAACTTGTAATCACATTTTGAG 596
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 534 TTACTTGATGAAGGAGAAAGGTTTTTATCCCAAAACTGAAACTTGTAATCACATTTTGAC 593
Query 597 TTTGTTATCGAGGTTGAATCGTATAGAGAACGCTTGGGTCTTCTACGCTGACATGTATAG 656
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 594 TTTGTTATCAAGGTTGAATCGTATAGAGAACGCTTGGGTCTTCTATGCTGATATGTATAG 653
Query 657 AATGGAGATTAAGTCGAATGTTTACACGTTCAATATAATGATCAATGTATTGTGCAAGGA 716
||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 654 GATGGAGATTAAATCGAATGTGTACACTTTCAATATAATGATCAATGTATTGTGTAAGGA 713
Query 717 AGGGAAGTTGAAGAAGGCCAAGGGATTTTTATGG-ATCATGGAGAG-TTTTGGAATTAAG 774
|||||||||||||||||| ||||| |||||| || ||||||||| | |||||| ||||||
Sbjct 714 AGGGAAGTTGAAGAAGGCTAAGGGTTTTTTA-GGTATCATGGAG-GTTTTTGGGATTAAG 771
Query 775 CCTACTGTTGTGACTTACAACACTCTTGTTCAAGGGTATTCTTTGAGAGGACGAATCGAA 834
|| ||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 772 CCAACTATAGTGACTTACAACACTCTTGTTCAAGGGTTTTCTTTGAGAGGACGAATCGAA 831
Query 835 GGTGCTCGTATGATTATCAGTGAAATGAAATCTAAAGGCTTTCAACCAGATTTGCAGACG 894
|| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 832 GGAGCTCGTTTGATTATCAGTGAAATGAAATCTAAAGGCTTTCAACCAGATATGCAGACG 891
Query 895 TACAACCCGATTCTGTCTTGGATGTGTAATGAAGGAAGAGCCTCTGAGGTGTTGAGGGAG 954
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 892 TATAATCCGATTCTGTCTTGGATGTGTAATGAAGGAAGAGCTTCTGAGGTGTTGAGGGAG 951
Query 955 ATGAAGGGGAGTGGGTTGGTTCCGGACTCTGTTTCGTACAATATTTTGATTCGTGGTTGT 1014
||||||| || ||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 952 ATGAAGGAGATTGGGTTGGTTCCGGATTCTGTTTCGTACAATATTTTGATCCGTGGTTGT 1011
Query 1015 AGTAACAATGGGGATTTGGAGACAGCTTTTGCTTACAGGGATGAGATGGTGAAACAAGGT 1074
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1012 AGTAACAATGGGGATTTGGAGATGGCTTTTGCTTACAGGGATGAGATGGTGAAACAAGGT 1071
Query 1075 ATGGTGCCGACGTTTTATACTTACAACACGTTGATTCATGGTTTGTTTATGGAGAATAAG 1134
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1072 ATGGTGCCGACGTTTTATACTTACAACACGTTGATACATGGTTTGTTTATGGAGAATAAG 1131
Query 1135 ATAGAAGCTGCGGAGATATTGATTAGGGAGATTAGAGAGAAGGGTATAGTCTTGGATTCT 1194
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1132 ATAGAAGCTGCTGAGATATTGATTAGGGAGATTAGAGAGAAGGGTATAGTTTTGGATTCT 1191
Query 1195 GTCACGTACAATATACTCATAAATGGTTATTGCCAGCATGGAGATGCAAAGAAAGCATTT 1254
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GTCACTTACAATATACTGATAAATGGTTATTGCCAGCATGGAGATGCAAAGAAAGCATTT 1251
Query 1255 GCTTTGCACGACGAAATGCTGACCGATGGAATTCAGCCTACGCAGTTTACTTATACGTCG 1314
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GCTTTGCATGACGAAATGATGACCGATGGAATTCAGCCTACGCAGTTTACTTATACGTCG 1311
Query 1315 CTTATTTATGTCCTATGTAGAAGAAATAAAACGAGGGAAGCGGATGAGTTGTTTGAGAAA 1374
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1312 CTTATTTATGTCCTGTGTAGAAAAAATAAAACGAGGGAAGCGGATGAGTTGTTTGAGAAA 1371
Query 1375 GTTGTAGGCAAGGGAATGAAGCCTGATCTTGTGATGATGAATACCTTGATGGATGGTCAC 1434
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GTTGTGGGAAAGGGAATGAAGCCTGATCTTGTGATGATGAATACCTTGATGGATGGTCAC 1431
Query 1435 TGTGCAACAGGCAACATGGACCGTGCATTTTCG-TTGCTTAAGGAGATGGACAGGATGAA 1493
||||| | ||||||||||||||||||||||||| || ||||| |||||||||| |||||
Sbjct 1432 TGTGCTATAGGCAACATGGACCGTGCATTTTCGCTT-CTTAAAGAGATGGACATGATGAG 1490
Query 1494 TAT-AGATCCTGATGATGTGACATACAATTGTTTGATGCGAGGGCTCTGTGGAGAAGGGA 1552
||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1491 TATCA-ATCCTGATGATGTGACATACAATTGTTTGATGCGAGGGCTATGTGGAGAAGGGA 1549
Query 1553 AATTTGAGGAAGCTCGTGAGCTGATGGGGGAGATGAAGAGAAGAGGAATCAAACCTGACC 1612
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1550 AATTTGAGGAAGCTCGTGAGCTGATGGGAGAGATGAAGAGAAGAGGAATCAAACCTGACC 1609
Query 1613 ACATTAGTTACAACACTCTAATAAGTGGGTATAGTAAGAAAGGGGATACAAAGCATGCTT 1672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 ACATTAGTTACAACACTCTAATAAGTGGGTATAGTAAGAAAGGGGATACAAAGCATGCTT 1669
Query 1673 TCATGGTTCGGGATGAGATGTTGAGTCTCGGGTTTAATCCTACTCTTCTCACATACAATG 1732
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1670 TCATGGTTCGTGATGAGATGTTGAGTCTCGGGTTTAATCCTACTCTTCTCACTTACAATG 1729
Query 1733 CTCTGTTAAAGGGTTTGAGTAAAAACCAGGAGGGTGAACTCGCAGAGGAGCTACTAAGGG 1792
|||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1730 CTCTGTTAAAAGGTTTGAGTAAAAACCAGGAGGGTGAACTAGCAGAGGAGCTGCTAAGGG 1789
Query 1793 AAATGAAAAGTGAAGGCATTGTTCCTAATGACATCTCCTTCTGTTCTGTCATTGAAGCAA 1852
||||||||||||||||||| ||||||||||||| |||||| || ||||||||||| ||||
Sbjct 1790 AAATGAAAAGTGAAGGCATCGTTCCTAATGACAGCTCCTTTTGCTCTGTCATTGAGGCAA 1849
Query 1853 TGTC 1856
||||
Sbjct 1850 TGTC 1853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92670206070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5