BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480424
Length=2660
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15690.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3164 0.0
AT2G15680.1 | Symbols: | Calcium-binding EF-hand family protei... 902 0.0
> AT2G15690.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:6830995-6833777 REVERSE LENGTH=2783
Length=2783
Score = 3164 bits (1713), Expect = 0.0
Identities = 2056/2217 (93%), Gaps = 41/2217 (2%)
Strand=Plus/Plus
Query 468 TCCTCAATACGGTGGTCAAAAT-CCTCAACACGGTGGTCA-AAGGCCTCAATACGGTGGT 525
||||||| | ||||||| |||| ||||| |||||||||| || |||||| ||||||||
Sbjct 564 TCCTCAACAAGGTGGTC-AAATGTCTCAATACGGTGGTCACAA-TCCTCAACACGGTGGT 621
Query 526 CAAC-GGCCTCAATACGGTGGTCAGAGGCCTCAATACGGTGGAGCTGGTAACAATTATCA 584
| || ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 622 C-ACAGGCCTCAGTACGGTGGTCAGAGGCCTCAATACGGTGGACCTGGTAACAATTATCA 680
Query 585 GAATCAGAATGGTCAACAAAGTCATCAGAGTCAGTATTACACTCCgcagcagcagcagca 644
||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||| ||
Sbjct 681 GAATCAGAATGTTCAACAAAGTAATCAGAGTCAGTACTACACTCCGCAGCAGCAGCAACA 740
Query 645 gcagcaACCACCGCGAAGCTCGAATCAAATCTCTAATCAGATCAATGAGGTAG-T--TCC 701
| ||||||||| |||||||||||||||| | |||||||||| |||||||||| | |||
Sbjct 741 ACCGCAACCACCACGAAGCTCGAATCAAAGCCCTAATCAGATGAATGAGGTAGCTCCTCC 800
Query 702 TCCTAGTGTTGAAGAGGTGATGAGGTTATGTCAGCGTAGGCTTTATAAAGATGCTATTGA 761
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 801 TCCTAGTGTTGAAGAGGTGATGAGGTTATGTCAGCGTAGGCTATATAAAGATGCTATTGA 860
Query 762 ATTGCTTGATAAAGGAGCTATGCCTGATAGAGAATGTTTCGTTTTGTTGTTTGAGTCGTG 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 861 ATTGCTTGATAAAGGAGCTATGCCTGATAGAGAATGTTTCGTTTTGTTGTTTGAGTCTTG 920
Query 822 TGCGAATTTGAAGTCACTTGAGCATTCTAAGAAGGTACATGATCATTTCCTGCAGTCTAA 881
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 921 TGCGAATTTGAAGTCGCTTGAGCATTCTAAGAAGGTACATGATCATTTCCTTCAGTCTAA 980
Query 882 GTTTAGAGGTGATCCGAAACTGAACAATATGGTGATTAGTATGTTTGGGGAATGTAGGAG 941
||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct 981 GTTTAGAGGTGATCCAAAACTTAACAATATGGTGATTAGTATGTTTGGAGAGTGTAGTAG 1040
Query 942 TGTTACTGATGCTAAGAGAGTTTTTGATCATATGGTTGATAAAGATATGGATTCTTGGCA 1001
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1041 TATTACTGATGCTAAGAGAGTGTTTGATCATATGGTTGATAAAGATATGGATTCTTGGCA 1100
Query 1002 TTTGATGATGCGTGCGTATAGTGATAACGGAATGGGAGATGATGCGTTGCATTTGTTTGA 1061
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1101 TTTGATGATGTGTGCGTATAGTGATAACGGAATGGGAGATGATGCGTTGCATTTGTTCGA 1160
Query 1062 GGAGATGACGAAACAAGGGTTGAAGCCGAACGAGGAGACTTTCCTTACGGTTTTCTTGGC 1121
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1161 AGAGATGACGAAACATGGGTTGAAGCCGAACGAGGAGACTTTCCTTACGGTCTTCTTGGC 1220
Query 1122 TTGTGCTACTGTTGGTGGTATTA-AAGAAGCGTTTTTGCATTTTGATTCGATGA-GAAAC 1179
||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||| |
Sbjct 1221 TTGTGCTACTGTTGGTGGTAT-AGAAGAAGCGTTTTTGCATTTTGATTCGATGAAGAA-C 1278
Query 1180 GAGCATGGGATCAGTCCGAAGACAGAACATTATTTGGGTGTTTTAGGTGTTCTTGGAAAA 1239
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1279 GAGCATGGGATTAGTCCGAAGACAGAGCATTATTTGGGTGTTTTAGGTGTTCTTGGGAAA 1338
Query 1240 TGTGGACATCTTGTTGAGGCTGAGCAATACATTCGTGATCTTCCGTTTGAACCCACAGCT 1299
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1339 TGTGGACATCTTGTTGAGGCTGAGCAATATATCCGTGATCTTCCGTTTGAACCCACAGCT 1398
Query 1300 GATTTCTGGGAAGCTATGAGGAACTATGCTCGGTTACATGGAGATATCGATTTAGAGGAT 1359
||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1399 GATTTCTGGGAGGCTATGCGGAACTATGCTCGGTTACATGGTGATATCGATTTAGAGGAT 1458
Query 1360 TACATGGAAGAATTGATGGTTGATGTTGACCCTTCAAAGGCGGTAACCAACAAAATTCCT 1419
|||||||| |||||||||||||||||||| ||||||||||| |||| |||||||||||||
Sbjct 1459 TACATGGAGGAATTGATGGTTGATGTTGATCCTTCAAAGGCTGTAATCAACAAAATTCCT 1518
Query 1420 ACCCCTCAACCTAAATCATTCAAGGAAACAAATATGGTTACTAGTAAGAGTAGGATTCTC 1479
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1519 ACTCCTCCACCTAAATCATTCAAGGAAACAAATATGGTTACTAGTAAGAGTAGGATCCTT 1578
Query 1480 GAGTTTCGAAATCTGACTTTCTACAAGGATGAAGCAAAGGAGATGGCTGCAAAGAAAGGA 1539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 GAGTTTCGAAATCTGACTTTCTACAAGGATGAAGCAAAGGAGATGGCTGCAAAGAAAGGA 1638
Query 1540 GTGGTTTATGTTCCGGACACACGATTTGTTCTGCATGATATCGATCAAGAGGCCAAAGAA 1599
|||||||||||||| |||||||| ||||| || |||||||||||||||||||| ||||||
Sbjct 1639 GTGGTTTATGTTCCTGACACACGGTTTGTGCTTCATGATATCGATCAAGAGGCTAAAGAA 1698
Query 1600 CAGGCACTACTCTATCACAGTGAGAGGTTAGCGATTGCTTATGGTATCATATGCACCCCA 1659
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699 CAGGCACTACTCTACCACAGTGAGAGGTTAGCGATTGCTTATGGTATCATATGCACCCCA 1758
Query 1660 CCGAGGAAGACGCTCACAATCATTAAGAATCTCCGTGTGTGTGGGGACTGTCACAA-TTT 1718
|| |||||||| || |||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 1759 CCAAGGAAGACCCTAACAATCATCAAGAATCTCCGTGTGTGTGGGGATTGTCACAACTTT 1818
Query 1719 CATCAAGATCATGTCCAAAATCATTGGTAGGGAGTTGATCGTGAGAGACAACAAACGTTT 1778
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1819 -ATCAAGATCATGTCCAAAATCATTGGTAGGGTGTTGATCGTGAGAGACAACAAACGTTT 1877
Query 1779 CCATCACTTCAAAGACGGTAAATGTTCTTGTGGTGATTACTGGTAGAGCGGCGTTTTTCT 1838
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1878 CCATCACTTCAAAGACGGTAAATGTTCTTGCGGGGATTACTGGTAGAGCGGCGTTTT-CT 1936
Query 1839 GTGCCTTTGTTTCGCATCATGTATAGCGC--TCTAAGCTCTTGCCAGAACTCTGCTAGCA 1896
||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||
Sbjct 1937 GTGACTTTGTTTCGCATCATGTATAGCGCGCTCTAAGCTCTCGCCAGAACTTTGCTAGCA 1996
Query 1897 GTTGGGAAATCGAATAGTATTTGCTACGCTGTAACAAATTTCATCTGCTTT-GAACCCTT 1955
|||||||||| |||||||||||||||||||||||||| ||||||||||| | || |||||
Sbjct 1997 GTTGGGAAATGGAATAGTATTTGCTACGCTGTAACAAGTTTCATCTGCTCTAGA-CCCTT 2055
Query 1956 TTACATGAGTTATTAAATAAGTT-ATTGCTTTATATCTA-T-T-ATTGGTCTTATTCTGG 2011
||||||||| |||| ||||| ||||||||||||||| | | |||||||| ||||| |
Sbjct 2056 TTACATGAGGAATTATC-AAGTTTATTGCTTTATATCTACTATTATTGGTCTCATTCTCG 2114
Query 2012 AAGAACATTGGAGATCATGTCGATTCAAAGTTACAA-G-ATT--TCATGT--TTTGAGAT 2065
|||||| | | | | |||| || ||| ||| | | || | ||| ||||| |
Sbjct 2115 AAGAACGT-G-ACTTAATGTT--TTGAAA-TTAGATCGTATGAATAATGAACTTTGAT-T 2168
Query 2066 ACAAT-AACAGAGACTGATCTG-TTCAGACATTGTTGGTGGACATCATCCTCATGAATTC 2123
||| | |||||||| ||| || || |||||||||||| |||||||| | ||||| ||
Sbjct 2169 ACA-TCAACAGAGAGAGATATGGTT-AGACATTGTTGGAAGACATCATTTTGATGAACTC 2226
Query 2124 TTCCATATTAACCAATCCATCACCATCTGCATCAACAGCTCTCACCATCCTCTTGCAGTC 2183
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 2227 TTCCATATTAACCAATCCATCACCATCTGCATCAACAGCTCTAACCATCCTGTTGCAGTC 2286
Query 2184 CTCTAAGCTACATCTCTCCCCAAGCTTCCTCAGAACCGACATAACTTCCTCTGCGCTTAT 2243
|||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||
Sbjct 2287 CTCTAAGCTACATCTCTCACCAAGCTTCCACAGAACCGACATCACTTCCTCTGCGCTTAT 2346
Query 2244 CTTCCCATCCCCGTTCAAATCGAAAGTCCAGAAAGCGTTTCGTATATCAGATGACCTAAT 2303
||||||||| ||||||||||| ||||||||||||| ||||||||||| || ||||||||
Sbjct 2347 CTTCCCATCGCCGTTCAAATCAAAAGTCCAGAAAGAATTTCGTATATCCGAAGACCTAAT 2406
Query 2304 CCCTCCACTTCTCTTGTATGCATCAATAAACTCCCTGAAATCAATAAACCCATCACCGTC 2363
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2407 CCCACCACTTCTCTTGTATGCATCAATAAACTCCCTGAAATCAATAAACCCATCACCGTC 2466
Query 2364 CAGATCCACAGCCTTGAAGATCTTAGGCACATCATCGATCGTCCGCTCTTGTCCTAGCGC 2423
||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 2467 CAGATCCACAGCCTTAAAGATCTTAGGCACATCCTCGATCGCCCGCTCTTGTCCTAGCGC 2526
Query 2424 TCTCAGCACCACCTTGTACTCTGTCTGAGAGATTTTCCCGTCTTTATCCGAATCAAACCT 2483
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 2527 TCTCAGCACCACCTTGTACTCAGTCTGAGAGATTTTCCCGTCTTTATCCAAATCAAACCT 2586
Query 2484 GCTAAAAACACGTCTCATCTCATTCACAGAAGGCTGAGAGAAACCTCTTGATCCAGGTGA 2543
||| |||||||||||||||||||||||||||||||||||||| |||| || |||||||||
Sbjct 2587 GCTGAAAACACGTCTCATCTCATTCACAGAAGGCTGAGAGAAGCCTCCTGGTCCAGGTGA 2646
Query 2544 AGACAGCCCTGAGGATTGTCTATCTCTAGAGAACATCCTTGAAGGCTTCCTCAACATCTT 2603
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2647 AGATAGCCCTGAGGATTGTCTATCTCTAGAGAACATCCTTGAAGGCTTCCTCAACATCTT 2706
Query 2604 GTTCTTGGAGAGCTTATACTGCAACTCAAGAAAACTCACGTTTGACATGTCTGATTT 2660
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2707 GTTCTTGGAGAGCTTGTACTGCAACTCAAGAAAACTCACGTTTGACATGTCTGATTT 2763
Score = 682 bits (369), Expect = 0.0
Identities = 514/581 (88%), Gaps = 21/581 (4%)
Strand=Plus/Plus
Query 1 TTAGCCCAACTCGGCCC--ATCATAAATTAATTAACAGGCCTAACAAACCCAAAAGTGAA 58
||| ||||||||||||| || |||| ||||| |||||||||||||| ||||||||||||
Sbjct 4 TTAACCCAACTCGGCCCAAAT-ATAATTTAATCAACAGGCCTAACAAGCCCAAAAGTGAA 62
Query 59 TCTTATCATAATTTCATTTCCTGCGAATATTCTCATCCCCAATCTT-TTAATTCACAGA- 116
|||||||||||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct 63 ACTTATCATAATTTCATTTCCTGGGAATATTCTCATCCCCAATCTTATT--TTCACAGAC 120
Query 117 -CTCACTAGGGTTTTGGTTTCT-CTCT-AGGGTTTTAATCTTTCTCCATTTCTCTCAGAG 173
||||||||||||||||||||| || | |||||||||||| ||| |||||||||||||||
Sbjct 121 TCTCACTAGGGTTTTGGTTTCTCCTATCAGGGTTTTAATCGTTCACCATTTCTCTCAGAG 180
Query 174 AAAAATGTCTTCTCTAATGGCGATTCGTTGCGCACGAACCCCGAAAATCGTCACAATAGG 233
|||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||
Sbjct 181 -AAAATGTCTTCTCTAATGGCCATTCGTTGCGCACGAACCCAGAATATCGTCACAATCGG 239
Query 234 TTCTCTCCTTCATTTACGTTCTTCATTTCCCCGACTCTCCTCTCAATTCCACTCCTCC-G 292
||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||| |
Sbjct 240 CTCTCTCCTTCAGTTACGTTCTTCATTTCCCAGACTCTCCTCTCAATTCCACTTCTCCGG 299
Query 293 TGACCCTAAACTCAATTCCGATCAAAAACCTAAGCACATCCGCCGCCACTAACGATTACT 352
| |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct 300 T-ACCCTAAACTCAATTCCGATCAAACACCTAAGCACATCCGCCGCCGCAAACGATTACC 358
Query 353 ACCAGAATCCTCAATCTGGATCACCGTCTCAACAACAACGCCCGTATCCACCTCAAAGCT 412
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 359 ACCAGAATCCTCAATCTGGATCACCGTCTCAGCATCAACGCCCATATCCACCTCAAAGCT 418
Query 413 TTGATTCTCAGA----G-CTATCAG-AATCAAAGAGTTCCACAAAACCCTAACCAATGGA 466
| |||||||||| | | | || |||||| |||||||||||| |||||| ||||||
Sbjct 419 TCGATTCTCAGAATCAGACCAACACTAATCAACGAGTTCCACAAAGCCCTAATCAATGGT 478
Query 467 CTCCTCAATACGGTGGTCAAA-ATCCTCAACACGGTGGTCAAAGGCCTCAATACGGTGGT 525
|| ||||| |||||||||||| | |||||| |||||||||||| |||||| |||| |||
Sbjct 479 CTACTCAACACGGTGGTCAAATA-CCTCAATACGGTGGTCAAAATCCTCAACACGGGGGT 537
Query 526 CAACGGCCTCAATACGGTGGTCAGAGGCCTCAATACGGTGG 566
||| |||||| |||||||||||| | |||||| | |||||
Sbjct 538 CAAAGGCCTCCATACGGTGGTCAAAATCCTCAACAAGGTGG 578
> AT2G15680.1 | Symbols: | Calcium-binding EF-hand family protein
| chr2:6830995-6831641 FORWARD LENGTH=647
Length=647
Score = 902 bits (488), Expect = 0.0
Identities = 567/605 (94%), Gaps = 5/605 (1%)
Strand=Plus/Minus
Query 2058 TTTGAGATACAAT-AACAGAGACTGATCT-GTTCAGACATTGTTGGTGGACATCATCCTC 2115
||||| ||| || |||||||| ||| | ||| |||||||||||| |||||||| |
Sbjct 622 TTTGA-TTAC-ATCAACAGAGAGAGATATGGTT-AGACATTGTTGGAAGACATCATTTTG 566
Query 2116 ATGAATTCTTCCATATTAACCAATCCATCACCATCTGCATCAACAGCTCTCACCATCCTC 2175
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 565 ATGAACTCTTCCATATTAACCAATCCATCACCATCTGCATCAACAGCTCTAACCATCCTG 506
Query 2176 TTGCAGTCCTCTAAGCTACATCTCTCCCCAAGCTTCCTCAGAACCGACATAACTTCCTCT 2235
|||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||
Sbjct 505 TTGCAGTCCTCTAAGCTACATCTCTCACCAAGCTTCCACAGAACCGACATCACTTCCTCT 446
Query 2236 GCGCTTATCTTCCCATCCCCGTTCAAATCGAAAGTCCAGAAAGCGTTTCGTATATCAGAT 2295
||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||
Sbjct 445 GCGCTTATCTTCCCATCGCCGTTCAAATCAAAAGTCCAGAAAGAATTTCGTATATCCGAA 386
Query 2296 GACCTAATCCCTCCACTTCTCTTGTATGCATCAATAAACTCCCTGAAATCAATAAACCCA 2355
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 GACCTAATCCCACCACTTCTCTTGTATGCATCAATAAACTCCCTGAAATCAATAAACCCA 326
Query 2356 TCACCGTCCAGATCCACAGCCTTGAAGATCTTAGGCACATCATCGATCGTCCGCTCTTGT 2415
||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||
Sbjct 325 TCACCGTCCAGATCCACAGCCTTAAAGATCTTAGGCACATCCTCGATCGCCCGCTCTTGT 266
Query 2416 CCTAGCGCTCTCAGCACCACCTTGTACTCTGTCTGAGAGATTTTCCCGTCTTTATCCGAA 2475
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 265 CCTAGCGCTCTCAGCACCACCTTGTACTCAGTCTGAGAGATTTTCCCGTCTTTATCCAAA 206
Query 2476 TCAAACCTGCTAAAAACACGTCTCATCTCATTCACAGAAGGCTGAGAGAAACCTCTTGAT 2535
||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 205 TCAAACCTGCTGAAAACACGTCTCATCTCATTCACAGAAGGCTGAGAGAAGCCTCCTGGT 146
Query 2536 CCAGGTGAAGACAGCCCTGAGGATTGTCTATCTCTAGAGAACATCCTTGAAGGCTTCCTC 2595
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 CCAGGTGAAGATAGCCCTGAGGATTGTCTATCTCTAGAGAACATCCTTGAAGGCTTCCTC 86
Query 2596 AACATCTTGTTCTTGGAGAGCTTATACTGCAACTCAAGAAAACTCACGTTTGACATGTCT 2655
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 85 AACATCTTGTTCTTGGAGAGCTTGTACTGCAACTCAAGAAAACTCACGTTTGACATGTCT 26
Query 2656 GATTT 2660
|||||
Sbjct 25 GATTT 21
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132089560919
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5