BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480427
Length=1175
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15760.1 | Symbols: | Protein of unknown function (DUF1645)... 1659 0.0
> AT2G15760.1 | Symbols: | Protein of unknown function (DUF1645)
| chr2:6865610-6866877 REVERSE LENGTH=1268
Length=1268
Score = 1659 bits (898), Expect = 0.0
Identities = 1089/1179 (92%), Gaps = 22/1179 (2%)
Strand=Plus/Plus
Query 1 CTCTCTCTTCTT-TAATCTCTCTAAAGTCAAGCTTTTCTTCTGAAAGGGAACACCTTCCA 59
|||||||| ||| | | ||||||||||||||||||||| ||| |||||||||||||| ||
Sbjct 14 CTCTCTCTCCTTGT-ACCTCTCTAAAGTCAAGCTTTTCGTCTAAAAGGGAACACCTTACA 72
Query 60 AGAACCAAGAAAGGCAAAATAAGAACAGAGCATCCAAAGAACAACCCATTAATGGAGATA 119
| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 73 ACAACCAAGAAAGGCAAAAGAAGAACAGAGCATCCAAAGAACAAACCATTAATGGAGATA 132
Query 120 GAAGTGGC---AGTAGCATCAGCAGAACTCAATTTCGACAGCACAACTTCTTCTCCTTAC 176
|||||||| || |||| |||||||||||||||| |||||||||||||| |||||||||
Sbjct 133 GAAGTGGCAGAAGCAGCAGCAGCAGAACTCAATTTTGACAGCACAACTTCGTCTCCTTAC 192
Query 177 ATAACAGCTCCTTCAAGCCCAACTCGATTTGGTAACAACAATGTTTTCTTTTTCAGTGCA 236
|||||||||||||| ||||||||||||||||| |||||| |||||||||||||
Sbjct 193 ATAACAGCTCCTTCGAGCCCAACTCGATTTGG---CAACAA------CTTTTTCAGTGCA 243
Query 237 CCCACAAGCCCTTCTCCTTCCACTTCCTCTAACATACCTTTTGATTGGGATGACCAACCA 296
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CCAACAAGCCCTTCTCCTTCCACTTCCTCTAACATACCTTTTGATTGGGATGACCAACCA 303
Query 297 AGAACTCCCAAAAAGAGATCAGCCAGCGATTTCGAAGACGATTTTGAGTTCAATTTCAGT 356
||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 304 AGAACTCCCAAGAAGAGATCAGCCATCGGTTTCGAAGACGATTTTGAGTTCAATTTCAGT 363
Query 357 GGTCAATTGGAGAAAACTTCTTTCTCTGCCGCCGATGAGCTCTTTGATGGAGGAAAGATT 416
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 364 GGTCAGTTGGAGAAAACTTCTTTCTCTGCAGCTGATGAGCTCTTTGATGGAGGAAAGATT 423
Query 417 CGACCTTTAGGGCCACCACTCACTCCTACTGTTTCTTCTCCTAGATCTAGGGATCTTGAG 476
|| |||||| || |||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 424 CGTCCTTTAAGGACACCTCTCACTCCTACTGTTTCTTCTCCTAGATCTAGGGGTCTTGAG 483
Query 477 ATAGAAGTTTCCGATGATCAAAAAGATCGAGGAAGAGATCGGTCTCCGGGATCTTCTTCT 536
||||||| ||| |||||||| ||||||||||||||||| ||||| || ||||||||||||
Sbjct 484 ATAGAAGATTCGGATGATCAGAAAGATCGAGGAAGAGACCGGTCACCAGGATCTTCTTCT 543
Query 537 TCGCGTTATGATCGTAAAGGAAGCCGTTCTATGTCTCCGTTGAGAGTTTCAGACATTATG 596
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 544 TCGCGTTATGATCGTAAAGGAAGCCGTTCTATGTCTCCGTTAAGGGTTTCAGACATTATG 603
Query 597 GTTGGTGAAGAAGAAGAAGTACAATCAACAAAATTGGTTGCTTCCAACACAAGCAATCAA 656
|||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 604 GTTGATGAAGAAGAAGAAGTACAATCAACAAAAATGGTTGCTTCCAACACAAGTAATCAA 663
Query 657 AAATCCTCTGTTTTCTTGTCTGCTATTCTGTTCCCTGGTCGAGCATATAAGAAGTGGAAA 716
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 664 AAATCCTCTGTTTTCTTGTCAGCAATTCTGTTCCCTGGTCGTGCATATAAGAAGTGGAAA 723
Query 717 CTCAAAGATCTATTGCTGTTCAGGAGCGCATCGGATGGAAGACCGGTTCCGACCAAAGAG 776
||||||||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||
Sbjct 724 CTCAAAGATCTGTTGCTATTCAGGAGTGCATCGGATGGAAGACCGATTCCGACCAAAGAG 783
Query 777 TCATTGAATAGATACGATATACTTACAAAGAAAGAGGCCGAGGATGTGAAAAATTCGAGT 836
|| || ||||| ||||||||||||||||||||||| |||||||| |||| ||||||||||
Sbjct 784 TCTTTAAATAGGTACGATATACTTACAAAGAAAGATGCCGAGGAAGTGAGAAATTCGAGT 843
Query 837 ATCAGGTCGAGAGAGAGTTGTGAGTCGTCGGTGTCTAGGTCAAGGAGGAGGAACGGAGCC 896
||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 844 ATCAGATCGAGAGAGAGTTGTGAATCTTCGGTGTCTAGGTCAAGGAGGAGGAACGGAGCG 903
Query 897 GTGGTTTCGGCTCACGAGATGCATTACACTGAGAACAGAGCCGTGTCGGAGGAATTGAAG 956
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 904 GTGGTTTCGGCTCACGAGATGCATTACACTGAGAACAGAGCAGTATCGGAAGAATTGAAG 963
Query 957 AGGAAGACATTCTTGCCGTACAAGCAAGGCTGGTTAGGCTGCTTAGGGTTTAATCCTGCG 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 964 AGGAAGACATTCTTGCCGTACAAGCAAGGCTGGTTAGGCTGCTTAGGGTTTAACCCTGCG 1023
Query 1017 GTCAATGAAATTGCAAGAGTTGGGTCATTGTCACGTGCTTCCTCTTGATCCCTCTTGTAC 1076
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1024 GTCAATGAAATTGCTAGAGTTGGGTCATTGTCACGTGCTTCCTCTTGATCCCTCTCGCAC 1083
Query 1077 tttttttttGAACAAAGTTCTTATATATTATTTATTCGCtttttttGGTGGCTTTAAATG 1136
|||||||||| | || | || || |||| | |||| ||||||| ||||| ||||||||
Sbjct 1084 TTTTTTTTTGTCCTAA-T-CT-AT-TATT-T--ATTCACTTTTTT-GGTGGATTTAAATG 1135
Query 1137 TGGTGGTGAGGTTCCATCAAATTGATGGAAAAAGATGAT 1175
||||| |||||||||||||||||||||| |||| |||||
Sbjct 1136 TGGTGTTGAGGTTCCATCAAATTGATGGGAAAATATGAT 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57680426205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5