BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480428
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15780.1 | Symbols: | Cupredoxin superfamily protein | chr2... 1310 0.0
> AT2G15780.1 | Symbols: | Cupredoxin superfamily protein | chr2:6873545-6874741
REVERSE LENGTH=935
Length=935
Score = 1310 bits (709), Expect = 0.0
Identities = 881/959 (92%), Gaps = 32/959 (3%)
Strand=Plus/Plus
Query 1 AATCACTTATCAAATAGCTAACAATTCACAAGAAGAAGCAATGGCACACTCTCGTTTTTT 60
|||| ||||||||||| |||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1 AATCTCTTATCAAATAACTAACAATTCACAAGAAGAAACAATGGTACACTCTCGTTTTTT 60
Query 61 GAACGtttttttAGTCCTAGTGACCATTGCTTCCATATTCTCCACATTTGCTGAGGCCAA 120
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 AAACGTTGTTTTAGTCCTAGTGACCATTGCTTCCATATTCTCCACATTTGCCGAGGCCAA 120
Query 121 TAGGGGCTTTGGGTGGGGTTGGGGTGGGCACTCCAACAATTCAAGTGGTTCAGGTTCAAA 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 TAGGGGCTTTGGGTGGGGTTGGGGTGGACACTCCAACAATTCAAGTGGTTCAGGTTCAAA 180
Query 181 CTCAAGGTCCGGAtggggttggggttggggttggggtCATGGCTCCAACTATTCAAGTGG 240
||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 CTCGAGGTCCGGA------TGGGGTTGGGGTTGGGGTCAAGGCTCCAACTATTCAAGTGG 234
Query 241 TTCAGGTTCAACCCCAGGGTCAGGATGGGGTTGGGGCTCTAGCCGAAACGGCTCAGGCTG 300
||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 235 TTCAGCTTCAACCCCAGGGTCAGGATGGGGTTTCGGCTCTAGTCGAAACGGCTCAGGCTG 294
Query 301 GGGTTGGGGTTGGGGCGGGGTTCCCAACAATACACACAACTC-GGGATCTGGTGGCTCGG 359
|||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||
Sbjct 295 GGGTTGGGGTTGGGGCGGGGTTCCCAACAATACACACAGCTCAGGG-TCTGGCGGCTC-- 351
Query 360 GTTGGGGTTGGGGCATGGGTCCTAACAACAATTACAGCTCAGGATCTGGAGGCTCGGGTT 419
||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 352 ----GGGTTGGGGCATGGGGCCTAACAACAATTACAGCTCGGGATCTGGCGGCTCGGGTT 407
Query 420 CGGGCTGGGGATATGGAGGTCATTCAAAAAACTATAATGCCACCTACAATGGACCTAGAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 CGGGCTGGGGATATGGAGGTCATTCAAAAAACTATAATGCCACCTACAATGGACCTAGAA 467
Query 480 AGATTATAGTCGGTGGAGACAAAGAGTGGAATTATGG-TGTCAACTATGCCGAGTGGGCG 538
|||| ||||||||||||||||||||||||| |||||| | |||| || || || |||||
Sbjct 468 AGATCATAGTCGGTGGAGACAAAGAGTGGACTTATGGAT-TCAATTACGCTGACTGGGCT 526
Query 539 TCTAAGACTGCTCCATTCTTTCTCAATGACATACTTGTTTTCAAATACAACCCACCAGCC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 TCTAAGACTGCTCCATTCTTTCTCAATGACATACTTGTTTTCAAATACAACCCACCAGCC 586
Query 599 CCGTTCACGCACAGCGTCTACTTGCTTCCAAACCCATCGAGCTATGAAAAGTGTGACGTG 658
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 587 CCGTTCACGCACAGCGTTTACTTGCTTCCGAACCCATCGAGTTATGAAAAGTGTGACGTG 646
Query 659 AAGAAAGGCAAAATGATTGCATCCCCGAAGCAAGGTGCGGGAAAAGGCTTTGAGTTTGTT 718
|||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 647 AAGAAAGGCAAAATGATTGCGTCTCCGAAGCAAGGTGCTGGAAAAGGCTTTGAGTTTGTT 706
Query 719 CTAAAACAGATGA-GACCTTACTACATTTCGTGCGGGGAGCATGATGGTGCTCACTGCAA 777
||||||||||||| | ||||||||||||||||| || |||||||| |||||||| ||||
Sbjct 707 CTAAAACAGATGAAG-CCTTACTACATTTCGTGTGGCGAGCATGACGGTGCTCATTGCAG 765
Query 778 CAACGGTACCATGAAGTTCACCGTCATGCCCATGCTACCCCGTTGGTAATGATG-TGGTA 836
||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 766 CAATGGTACCATGAAGTTCACCGTCATGCCCATGCTACCCCGTTGGTAATT-TGGTGGTA 824
Query 837 TTAAATCCAATTTCAACGTTAAAGTATCAAACATT-GGATTTTCATTTCGTTATTGTGTC 895
||||||||||| | | ||||||||||||||| || |||| ||| ||| |||||||
Sbjct 825 TTAAATCCAATG-C----T-AAAGTATCAAACATTAGGTTTTTGTTTT-GTTTTTGTGTC 877
Query 896 GTCAATAAATGAGACTACCATTATTTATGTGTCGT-AT-C-ATATTCACATTTTGTTGG 951
|||||||||||||| |||||||||||| ||| ||| || | ||||||||||||||||||
Sbjct 878 GTCAATAAATGAGATTACCATTATTTACGTG-CGTTATACCATATTCACATTTTGTTGG 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5