BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480432
Length=1936
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15860.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2218 0.0
> AT2G15860.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages; Has
110 Blast hits to 109 proteins in 51 species: Archae - 0; Bacteria
- 4; Metazoa - 37; Fungi - 10; Plants - 37; Viruses -
3; Other Eukaryotes - 19 (source: NCBI BLink). | chr2:6905388-6909429
REVERSE LENGTH=2046
Length=2046
Score = 2218 bits (1201), Expect = 0.0
Identities = 1333/1398 (95%), Gaps = 4/1398 (0%)
Strand=Plus/Plus
Query 531 GGGTTTGAAGGTTTTCGATGATTCAGTTGAGAGTTTCACTTCTGGTGCTTGGCAGGCATT 590
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 588 GGGTTTGAAGGTTTTCGATGATTCAGTTGAGAGTTTCACTTCTGGAGCTTGGCAAGCATT 647
Query 591 TGGAAATGCGTTAAAAGGGGGCACAAGTTTGGTGCAAAAGCTTGAAAACAGTGTCCAGCA 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TGGAAATGCGTTAAAAGGGGGCACAAGTTTGGTGCAAAAGCTTGAAAACAGTGTCCAGCA 707
Query 651 AGGTTCTTCTCCTAGGGAAGCTGGATCTGGTGCACCGTCTCTACTGGAGACAGGAAAAGC 710
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 708 AGGTTCTTCGCCTAGGGAAGCTGGATCTGGTGCACCGTCTCTACTAGAGACAGGAAAAGC 767
Query 711 ATTAACTGCTAAAGGAATGCAAGTACTTGAATTTGTGGGCAAGGAAACCATGGATTTACT 770
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 768 ATTAACTGCGAAAGGAATGCAAGTACTTGAATTTGTGGGCAAGGAAACTATGGATTTACT 827
Query 771 GATTACAGAGACTGGTCTTGGAGCTGAGCAGAATAGGGTAGACTTTAAGGATCAAATACC 830
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||
Sbjct 828 GATTACAGAGACTGGTATTGGAGCTGAGAAGGATAGGGTAGACTTTAAGGATCAAGTACT 887
Query 831 TGAGGAAGTTACATTTGATCGATGCTTTTACATTTATGGTGGTCCTGAGCAGCTTGAGGA 890
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TGAGGAGGTTACATTTGATCGATGCTTTTACATTTATGGTGGTCCTGAGCAGCTTGAGGA 947
Query 891 ATTGGAAGCATTGGCGAGCCACTATACTCTGTTGTTCAACAGGAGAAAGGGGAAATTGTC 950
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 ATTGGAAGCATTGGCTAGCCACTATACTCTGTTGTTCAACAGGAGAAAGGGGAAATTGTC 1007
Query 951 ACCAGATCAAAAATCGTTGTCTGACGGGAAGCTCAAACAAATCCAGCAACTGTTT-AGCT 1009
|||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| ||||
Sbjct 1008 ACCAGATCAAAAATCGCTGTATGACGGGAAGCTCAAACAAATCCAGCAACT-TTTCAGCT 1066
Query 1010 TCGCTGATGAAATGAGTGGAAGTAAAGCAGAGTCTGACAAAGGGAAGAAAATTGATATCA 1069
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1067 TTGCTGATGAAATGAGTGGAAGTAAAGCAGAGTCTGACAAAGGGAAGAAAATAGATATCA 1126
Query 1070 AAACTGAAGGCAATGATGATGACATGAAGAATCTGCATAACTCGAGTGTCAGCAAAGCTG 1129
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1127 AAACTGAAGGCAATGATGATGACATGAAGAATCTGCATAACTCAAGTGTCAGCAAAGCTG 1186
Query 1130 CTGATATGGCTGCTGGGTTCACAAATGCTTTAGCGGGACTAAACGTAAACGATATGATCC 1189
||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1187 CTGATATGGCTACTGGGTTCACAAATGCTTTAGCGGGACTACACGTAAATGATATGATCC 1246
Query 1190 AGCGGACCGGTGGCAGGCTTGAATCTCTTCACTCAGAAGGAGTTCATAGACTTTCAGAGA 1249
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 AGCGAACCGGTGGCAGGCTTGAATCTCTTCACTCAGAAGGAGTTCATAGACTTTCAGAGA 1306
Query 1250 TGTGCTGTTTTGCAGTCACTCATCTGCTTATTCTCGGTAAGTCCATGATATCTCATGCCA 1309
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1307 TGTGCTGTTTTGCAGTCACACATCTGCTTATCCTCGGTAAGTCCATGATATCTCATGCCA 1366
Query 1310 ACAAAGTTCAGGAAGAAGACACTGAGGCGTTGAAAATCGAATGGCCAGAGGATCCTACGG 1369
||||||||||||| |||||||||||||| ||||||||||| ||| ||||||||||||| |
Sbjct 1367 ACAAAGTTCAGGATGAAGACACTGAGGCATTGAAAATCGAGTGGGCAGAGGATCCTACAG 1426
Query 1370 AGAAAGCTAAGCTGATTAAAGGCAAGGCAGAATCGATGGCTGGATATGTTGAAGCAGTTT 1429
|||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||
Sbjct 1427 AGAAAGCTAAGCTGATTAGAGGCAAGGCAGAAACAATGGCTGGATATGTTGAAGCAGTTT 1486
Query 1430 CCAACAGTTTTATAACAGGTATATCAGACGTATCTGAAACATACTCGGCTGCGATTAAAG 1489
|||| || ||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 1487 CCAATAGCTTTATAACAGGAATATCAGATGTATCTGAAACATACTCAGCTGCGATTAAAG 1546
Query 1490 GAGTTGCTGCTGCTGATTCCAAAGATGATCTTCTGAAAACATCAACCATGCAGGAAAAAG 1549
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1547 GAGTTGCAGCTGCTGATTCCAAAGATGATCTTCTGAAAACATCGACCATGCAGGAAAAAG 1606
Query 1550 CAAGCACCTTCAACGATAGTCTTCGGTCTGACCAAACCACAGCTATCACAAAGATCCAGG 1609
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1607 CAAGCACCTTCAACGATAGTCTTCGCTCTGACCAAACCACAGCTATCACAAAGATCCAGG 1666
Query 1610 AAGGGCTTCAGTACCTGTCCTACGTTGTGATATCTACCTCAATGCCCTCTTCCTGATATA 1669
|||||||||||||||||||||| || ||||| |||||||| ||||||||| ||| |||||
Sbjct 1667 AAGGGCTTCAGTACCTGTCCTATGTCGTGATTTCTACCTCGATGCCCTCTGCCTAATATA 1726
Query 1670 ATAAGAGTCAGATTGGTCTTGTTTGTGGTTTACATGACTCAGGATTCGATTTAGTTTTCT 1729
|||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||
Sbjct 1727 ATAAGAGTCAGATTGGTCTTATTTGTGGTTTACATGACTT-GGATTTGATTTAGTTTTCT 1785
Query 1730 TTGTAATTGTAGATATATCTCTTTCGCTAGATGCTCTTATGGTAAGTTTTTCACACTTGT 1789
|| || |||||||||||||||||||||||| |||||||||||||||| |||| |||||||
Sbjct 1786 TTCTAGTTGTAGATATATCTCTTTCGCTAGCTGCTCTTATGGTAAGTCTTTCCCACTTGT 1845
Query 1790 GCTCTGCTTCTCTGTTGTCTGGATCTTGAAAGTTTTATTAAATCTAGAAACCAAAGATTG 1849
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1846 GCTCTACTTCTTTGTTGTCTGGATCTTGAAAGTTTTATTAAATCTAGGAACCAAAGATTG 1905
Query 1850 AAAGCAGGGAAGAGATTAGTAATTTCATCGAACTTTTGTTAGAAATATATTGTTGCTTCC 1909
|||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1906 AAAGCAGGGAAGCGATTAGTACTTT-ATCGAACTTTTGTTAGAAATATATTGTTGCTTCC 1964
Query 1910 AAATTTTTTACTTGGAAG 1927
| | ||||||||||||||
Sbjct 1965 AGAGTTTTTACTTGGAAG 1982
Score = 728 bits (394), Expect = 0.0
Identities = 501/549 (91%), Gaps = 21/549 (4%)
Strand=Plus/Plus
Query 1 GCTAACTGAATTACAGTTTTCGATTCGAAATTCTTAATC-CCATTTTCATTCCTTCGACA 59
||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||||
Sbjct 9 GCTAACTGATTTACAGTTTTCGATTCGAAAATCTTAATCTCCA-TTTCATTCCTTCGAC- 66
Query 60 AATCTTCACAC-AATCCTAATCTCATTTCTGGTAAATCCGATTTTGGTGAAACCCTAATT 118
|||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 67 -ATCTTCACACAAACCCTAATCTCATTTCTGGTAAATCCGATTTTGG-GAAACTCTAATT 124
Query 119 TGATCTCCAGATCGCTATCGACGATGGAGGAAGACAAGCAAATGCACGAGGAGAAATCAT 178
||||||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 125 TGATCTCGAGATCGCTAACAACGATGGAAGAAGACAAGCAAATGCACGAGGAGAAATCAT 184
Query 179 CCCCGGTT-------AA-------G-GGAGAAGAGCCTGAGATTGAGAAATTGACAGTGG 223
| | |||| || | ||||||||||| ||||||||||||||||||||||
Sbjct 185 CTCTGGTTAAAGAAGAACCGGTTCGTGGAGAAGAGCCCGAGATTGAGAAATTGACAGTGG 244
Query 224 CAGATACCGATGCGCCGCCGAAGAGTACCGGTGGTTGGGGTTGGGGTTTCTCTGGCTTCT 283
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 CAGATGTGGACGCGCCACCGAAGAGTACCGGTGGTTGGGGTTGGGGTTTCTCTGGCTTCT 304
Query 284 CTGTACTTTCCGATCTTCAAAAAGCTGCGGAAGAGATTTCTCGTAATGCTGCAGCGGTGG 343
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 305 CTGTGCTTTCCGATCTCCAAAAAGCTGCGGAAGATATTTCTCGTAATGCTGCAGCGGTGG 364
Query 344 CGGAGAAAGCGGCGAAAAGTATTGCAGATATGGGAGAAGTGGATGAAGACTCTGAATCTT 403
| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 365 CAGAGAAAGCAGCGAAAAGCATTGCAGAGATGGGAGAAGTGGATGAAGACTCTGAATCTT 424
Query 404 CTGCTAAGGAAGAAGAGAAAACTGAAGAAGCTGATACAGAGCAGGATAGTGATGATGAGA 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 CTGCTAAGGAAGAAGAGAAAACTGAAGAAGCTGATACAGAGCAGGATAGTGATGATGAGA 484
Query 464 ATGCAAAGTTAAAGAAGTCAGCTCTTGCGAGATTGGAGGGGGCAAGTGAAGAGTCGCTTC 523
|||| |||||||||||||||||||||| |||||||||||| |||||||||||||| ||||
Sbjct 485 ATGCGAAGTTAAAGAAGTCAGCTCTTGAGAGATTGGAGGGTGCAAGTGAAGAGTCACTTC 544
Query 524 TTAGCCAGG 532
|||||||||
Sbjct 545 TTAGCCAGG 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95883040950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5