BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480434 Length=237 Score E Sequences producing significant alignments: (Bits) Value AT5G06010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 195 2e-49 > AT5G06010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:1809940-1810263 FORWARD LENGTH=324 Length=324 Score = 195 bits (105), Expect = 2e-49 Identities = 121/129 (94%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 108 CGAAGAGAAAATCGCTATGCTCTTAGAGACTTACGGAATCATGACAGTCCCTGGTGATTT 167 |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 195 CGAAGAGACAATCGATATGCTCTTAGCGACTTACGGAATCATGACAGTCCCTGGCGATTT 254 Query 168 GGCTAACAAGAGAAACTTTGCTTTTGAAACCTTTCGTTGGGATCATAAGAACAATCACCC 227 ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 255 AGCTGACAAGAGAAAGTTTGCTTTTGAAACCTTTCGTTGGGATCATAAGAACAATCACCC 314 Query 228 TAAAGCTTA 236 |||||||| Sbjct 315 CAAAGCTTA 323 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10707030537 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5