BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480434
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 195 2e-49
> AT5G06010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G41761.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:1809940-1810263
FORWARD LENGTH=324
Length=324
Score = 195 bits (105), Expect = 2e-49
Identities = 121/129 (94%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 108 CGAAGAGAAAATCGCTATGCTCTTAGAGACTTACGGAATCATGACAGTCCCTGGTGATTT 167
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 195 CGAAGAGACAATCGATATGCTCTTAGCGACTTACGGAATCATGACAGTCCCTGGCGATTT 254
Query 168 GGCTAACAAGAGAAACTTTGCTTTTGAAACCTTTCGTTGGGATCATAAGAACAATCACCC 227
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 AGCTGACAAGAGAAAGTTTGCTTTTGAAACCTTTCGTTGGGATCATAAGAACAATCACCC 314
Query 228 TAAAGCTTA 236
||||||||
Sbjct 315 CAAAGCTTA 323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10707030537
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5