BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480435
Length=153
Score E
Sequences producing significant alignments: (Bits) Value
AT5G36904.1 | Symbols: | pseudogene of protein related to self... 206 6e-53
AT5G06020.1 | Symbols: | Plant self-incompatibility protein S1... 200 3e-51
AT5G36903.1 | Symbols: | pseudogene of protein related to self... 152 8e-37
> AT5G36904.1 | Symbols: | pseudogene of protein related to self-incompatibility
| chr5:14556141-14556625 FORWARD LENGTH=485
Length=485
Score = 206 bits (111), Expect = 6e-53
Identities = 140/153 (92%), Gaps = 5/153 (3%)
Strand=Plus/Plus
Query 2 GAGAACCATT-TCCAACT-AGAGGGCCTCTTACGACGATCACGGTACGAAACAATAATGA 59
||| |||||| | ||| | ||||| |||||||||||||||||||||| |||| |||||||
Sbjct 140 GAGTACCATTGT-CAA-TCAGAGGTCCTCTTACGACGATCACGGTACAAAACGATAATGA 197
Query 60 CTATTTGCTTGGAATCCACCGTAAATCTAAAGATGAT-ATCTCGGTTTCCACGTTCTCAA 118
||||||||||||||||||| ||||||||||||||||| |||| ||||||||| |||||||
Sbjct 198 CTATTTGCTTGGAATCCACTGTAAATCTAAAGATGATGATCTTGGTTTCCACATTCTCAA 257
Query 119 AAAAGGTGAATTATATGGTTGGAAATTTCATGT 151
| |||||||||||||||||||||||||||||||
Sbjct 258 ACAAGGTGAATTATATGGTTGGAAATTTCATGT 290
> AT5G06020.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr5:1811938-1812393 FORWARD LENGTH=456
Length=456
Score = 200 bits (108), Expect = 3e-51
Identities = 140/155 (90%), Gaps = 3/155 (2%)
Strand=Plus/Plus
Query 1 GGAGAACCATTTCCAACTAGAGGGCCTCTTACGACGATCACGG-TACGAAACAATAATGA 59
|||||||||||||||| |||||| |||||||||| |||||||| || ||||||||| ||
Sbjct 109 GGAGAACCATTTCCAATTAGAGGTCCTCTTACGAGGATCACGGTTA-AAAACAATAACGA 167
Query 60 CTATTTGCTTGGAATCCACCGTAAATCTAAAGATGAT-ATCTCGGTTTCCACGTTCTCAA 118
|||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| |||
Sbjct 168 TTATTTGCTTGGAATCCACTGTAAATCTAAAGATGATGATCTCGGTTTCCATATTCACAA 227
Query 119 AAAAGGTGAATTATATGGTTGGAAATTTCATGTAA 153
| | |||||||||||||||||||||||||||||||
Sbjct 228 AGAGGGTGAATTATATGGTTGGAAATTTCATGTAA 262
> AT5G36903.1 | Symbols: | pseudogene of protein related to self-incompatibility
| chr5:14555138-14555523 FORWARD LENGTH=386
Length=386
Score = 152 bits (82), Expect = 8e-37
Identities = 104/114 (91%), Gaps = 3/114 (3%)
Strand=Plus/Plus
Query 3 AGAACCATTTCCAACT-AGAGGGCCTCTTACGACGATCACGGTACGAAACAATAATGACT 61
|||||||||| ||| | ||||| ||||||||||| |||| ||||| ||||||||||||||
Sbjct 108 AGAACCATTTTCAA-TCAGAGGTCCTCTTACGACAATCAAGGTACAAAACAATAATGACT 166
Query 62 ATTTGCTTGGAATCCACCGTAAATCTAAAGATGAT-ATCTCGGTTTCCACGTTC 114
||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 167 ATTTGCTTGGAATCCACTGTAAATCTAAAGATGATGATCTCGGTTTCCACATTC 220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 6539175630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5