BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480436
Length=3142
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15900.1 | Symbols: | Phox-associated domain;Phox-like;Sort... 4929 0.0
AT2G15910.1 | Symbols: | CSL zinc finger domain-containing pro... 444 3e-123
> AT2G15900.1 | Symbols: | Phox-associated domain;Phox-like;Sorting
nexin, C-terminal | chr2:6927390-6932791 FORWARD LENGTH=3241
Length=3241
Score = 4929 bits (2669), Expect = 0.0
Identities = 2996/3153 (95%), Gaps = 26/3153 (1%)
Strand=Plus/Plus
Query 1 ATGAAGGCGATGGAGACTATACAAGATCTGATCGAAGAAGCTAAAGTACGGGCCGTATGG 60
|||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGAAGGCCATGGAGACTATACAGGATCTGATCGAAGAAGCTAAAGTACGAGCCGTATGG 60
Query 61 TGG-GCCTTGTGCATCTTCTCCGTCACCTATTTCTTGTCCCATACAAGTAAGAATAT-GT 118
||| | ||||||||||||||||||||||||||||||| |||||||||||| || | ||
Sbjct 61 TGGTG-CTTGTGCATCTTCTCCGTCACCTATTTCTTGACCCATACAAGTATCTAT-TGGT 118
Query 119 TGATGAATTTGCCAATCGCAATCGTTGGTCTTGT--CGGTGTGCGGGTTTTTCTTAATCA 176
| ||||||||||||| |||||| | | |||| ||||| |||| ||||| |||| ||
Sbjct 119 GGCTGAATTTGCCAATTGCAATC-CTCAT-TTGTGGCGGTGCGCGGTTTTTTTTTAACCA 176
Query 177 TGTTGAGTTCACATGGAAAGTTGTGTCGACTCCTAGAAAAAGTCAGTTGTCTTATCTTGA 236
| ||||||||| |||||||||| | |||||||||| | ||||||||||||||||||||
Sbjct 177 TTTTGAGTTCAGATGGAAAGTTCCGGCGACTCCTAGGCAGAGTCAGTTGTCTTATCTTGA 236
Query 237 GAAGAAGCAGTTGTCTGTGAATGATGCACGTCTTTCTGGTATCCCACCTCCTCCAAGGTG 296
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 237 GAAGAAGCAGTTGTCTGTGAATGATCCACGTCTTTCTGGTATCCCACCTCCTCCAAGGTG 296
Query 297 GAAGAAGAAAATCGACTCTCCTGTAGTGGAAGCTGCGATTAATGATTTTATTGACAAGAT 356
|||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 297 GAAGAAGAAAATAGATTCTCCTGTTGTGGAAGCTGCGATTAATGATTTTATTGACAAGAT 356
Query 357 CCTTAATGATTTCGTGGTGAATTTGTGGTACTCTTTGATTACGCCTGATAAAGAAGCGCC 416
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 357 CCTTAATGATTTCGTGGTGAATTTGTGGTACTCTTTGATTACTCCTGATAAAGAAGCGCC 416
Query 417 TGAACTCATACGTGCAGTAATCATGGATGCTCTTGGTGAAATTTCAGTGAGGGTAAAAGA 476
|||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| |||||
Sbjct 417 TGAACTTATACGTGCAGTGATCATGGATGCTCTTGGTGAGATTTCAGTTAGGGTGAAAGA 476
Query 477 GATCAATATCGTTGATTTGCTGACGAGGGATATAGTTGATCTGATAGGTGATCATTTGGA 536
||||||||| ||||| ||| | || |||||||||||||||||||||||||||||||||||
Sbjct 477 GATCAATATTGTTGACTTGTTAACCAGGGATATAGTTGATCTGATAGGTGATCATTTGGA 536
Query 537 AAGTTTTAGAAGAAACCAAGCTGCTATAGGTATTGATGTTATGAAGACATTGTCATCTGA 596
|||||||||||||||||||||||||||||||| |||||| ||||| || |||||||||||
Sbjct 537 AAGTTTTAGAAGAAACCAAGCTGCTATAGGTACTGATGTGATGAAAACTTTGTCATCTGA 596
Query 597 GGAGAGAGATGAAAGATTGAAATACAATCTTATGGCTTCTGGGGAACTCTATCCTGCACT 656
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 597 GGAGAGAGATGAAAGATTGAAATACCATCTTATGGCTTCTGGGGAACTCTATCCTGCACT 656
Query 657 CGTTTCACCTGAGAGTGAGTACAAGGTTCTTCAGAAAATAGTTGCTGGCATATTATCTGT 716
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CGTGTCACCTGAGAGTGAATACAAGGTTCTTCAGAAAATAGTTGCTGGCATATTATCTGT 716
Query 717 GGTTCTCAGACCACGAGAAGCTCAGTGCCCTCTTGTTCGAACAATAGCTAGAGAGATTGT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GGTTCTCAGACCACGAGAAGCTCAGTGCCCTCTTGTTCGAACAATAGCTAGAGAGATTGT 776
Query 777 TACTTCCTTAGTAATTCAACCTCTTTTGAATTTAGCATGCCCCGAGCGTATCAATGAGGT 836
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 777 TACTTGCTTGGTAATTCAACCTCTTTTGAATTTAGCATGCCCCGAGCGTATCAATGAAGT 836
Query 837 GATTGAGATCATTATCAATCTTATCAAAGAGGGAAACTTTGAGCAGTTCACTGG-GGAAG 895
| |||||||||||||||||||||| ||||| ||||||||||||||||| || || |||||
Sbjct 837 GTTTGAGATCATTATCAATCTTATTAAAGAAGGAAACTTTGAGCAGTTTAC-GGCGGAAG 895
Query 896 AGCAGAATGTCAATTCTGCCCCATTGTCAGCCTTCGATAGTCAAGCAAAAAGTATGAATT 955
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 896 AGCAGAATGTAAATTCTGCCCCATTGTCAGCCTTCGATAGTCAAGCAAAAAATATGAATT 955
Query 956 TCACAAAAGCTACTGAGCAGAAATCACCAAACACAAATGACAGACACCCAGATCTACACG 1015
| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 956 TGACAAAAGCTATTGAGCAGAAATCACCAAACATAAATGACAGACACCCAGATCTACACG 1015
Query 1016 TTCAACAGCACTCTGCTGATTGGGCTCGGAT-GCTAGAGGTTGCGACGCAAAGGAGAACA 1074
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1016 TTCAACAGCACTCTGCTGATTGGGCTCGG-TCGCTAGAGGTTGCGACGCAAAGGAGAACA 1074
Query 1075 GAGGTTCTGACTCCTGAAAACCTTGAAAACATGTGGACGAAAGGAAGGAATTATCAAAAG 1134
|||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1075 GAGGTTCTTAGACCTGAAAACCTTGAAAACATGTGGACGAAAGGAAGGAACTATCAAAAG 1134
Query 1135 AAGGAGTACAAAAAATCTCTGAAAAAGGGTTCTTCTACTGGAGCAAAAGAAAATGCAGTG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1135 AAGGAGTACAAAAAATCTCTGAAAAAGGGTTCTTCTACTGGAGCAAAAGAAAACGCAGTG 1194
Query 1195 GCGCAATTGCCCCCTAAAGTGAGCGTTGATAAGCAGTCACAAGCACAGATGGCTGAGGAA 1254
||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1195 GCGCAGTTACCCCCTAAAGTGAGCACTGATAAGCAGTCACAAGCACAGATGGCTGAGGAA 1254
Query 1255 TTAAGTATATCATCTTTACATGATGGAGGGCACCAGATTTATGAGGCTGATGTTAGAAAG 1314
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TTTAGTAAATCATCTTTACATGATGGAGGGCACCAGATTTATGAGGCTGATGTTAGAAAG 1314
Query 1315 GAATCTCGTTCAGATGGAAATAAAAATAGGCTTAAAAGATCCAATAGTACATCAGATCTT 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GAATCTCGTTCAGATGGAAATAAAAATAGGCTTAAAAGATCCAATAGTACATCAGATCTT 1374
Query 1375 AATCTACGTCCTGAAACGAGTCTAGCACTATTAGGAGTCAGTGAAGGCCCTCTAATCACA 1434
||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||
Sbjct 1375 AATCTACGTCCTGAAACGAGTCTAGCACTCTTAGGAGTCAGTGAGGGGCCGCTAATCACA 1434
Query 1435 GAATTTTACACCACAGATTTTATCAAGCACAATGATAACTACATTAGTGATAATAAATCC 1494
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1435 GAATTTTACACCACAGATTTTATCAAGCACAATGATAACTACATAAGTGATAATAAATCC 1494
Query 1495 CAAAGCATTGTTCTTCACAAAGAGGGTCAGCACTGCCTAAAGCTCAAATGTCGAGTTCTT 1554
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1495 CAAAGCATTGTTCTTCACAAAGAGGGTCAGCACTGCCTGAAGCTCAAATGTCGCGTTCTT 1554
Query 1555 GGAGCTTATTTTGAGAAGCTTGGATCAAAATCATTTGCCGTGTATTCTATTGCGGTGACA 1614
||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 1555 GGAGCTTATTTTGAGAAGCAAGGATCAAAATCATTTGCAGTATATTCTATTGCGGTGACA 1614
Query 1615 GATGTGGAAAACAAAACTTGGTTTGTTAAGAGAAGATACAGTAATTTCGAGCGATTACAT 1674
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1615 GATGTGGAAAACAAAACTTGGTTTGTTAAGAGAAGATACAGTAATTTTGAGCGATTACAT 1674
Query 1675 CGTCAACTCAAAGAAATCCCGAACTACAATTTACAGTTGCCTCCCAAGCGTATTTTCTCA 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 CGTCAACTCAAAGAAATCCCGAACTACAATTTACAGTTGCCTCCCAAGCGTATTTTCTCA 1734
Query 1735 TCAAGCACCGAAGATGCTTTTGTTCATCGCCGCTGTATTCAGCTGGACAAGTATCTACAA 1794
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1735 TCAAGCACCGAAGATGCTTTTGTTCATCGTCGCTGTATTCAGCTGGACAAGTATCTACAA 1794
Query 1795 GATCTCTTGTGTATAGCTAATGTTGCTGAACAGCATGAAGTTTGGGATTTTCTAAGCGCA 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 GATCTCTTGTGTATAGCTAATGTTGCTGAACAGCATGAAGTTTGGGATTTTCTAAGCGCA 1854
Query 1855 GCCTCTAAGAATTATTCTTTTGGAAAGTCTTCATCAGTGATGAAAACTCTTGCAGTTAAT 1914
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1855 GCCTCTAAGAATTATTCTTTTGGAAAGTCTTCATCAGTGATGAAAACTCTTGCAGTCAAT 1914
Query 1915 GTTGATGATGCCATGGACGATATTGTACGT-AGTTTCAAAGGTGTCTCAGATGGCCTTAT 1973
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1915 GTTGATGATGCCATGGACGATATTGTACGTCAGTT-CAAAGGTGTCTCAGATGGCCTTAT 1973
Query 1974 GCGCAAAGTTGTAGGATCCCCACTAGAAGAGCATGATCATGCTCCTGCCCGCCACCTCTC 2033
|||||| ||||||||||| ||||| || || ||||||||||||||| |||||||||||||
Sbjct 1974 GCGCAAGGTTGTAGGATCTCCACTTGATGAACATGATCATGCTCCTACCCGCCACCTCTC 2033
Query 2034 CTGGAGTGTAAATGAAATAAGCACTCAGCTCTCTAGGGAAAGCGCAACTGAGTCTATGCA 2093
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2034 CTGGAGTGTAAATGAAATAAGCACTCAGCTCTCTAGGGAAAGCGCAACTGAATCTATGCA 2093
Query 2094 CAGCAGCATTTCTGATACTGAAGACATCGACAAACTTGGAGAGAACACCCAAGGGGAAGG 2153
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2094 CAGCAGCATTTCTGATACTGAAGACATCGACAAACTTGGAGAGAACACTCAAGGGGAAGG 2153
Query 2154 TAGATTTGATTCAGAAGCCAATGGGTGGCACTCAGATAATGAATTGGACTCAAAGTATGT 2213
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2154 TAGATTTGATTCAGAAGCCAATGGGTGGCACTCAGATAATGAATTGGACTCTAAGTATGT 2213
Query 2214 TCCACCGAGAGTGGTTAGGCATCTTGGAGAGCCTGAGAGTTCGCCCTCGGAGAAGGAAAA 2273
|||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||
Sbjct 2214 TCCACCGAGAGTGGTTAGACGTCTTGGAGAGCCTGAGAGTTCGCCCTCAGAGAAGGAAAA 2273
Query 2274 TGATTTTAAGGCAAAATCTCAAGTTAGGGGGTTCACTGATTTGCAGCATGCTGATCCATT 2333
|||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||
Sbjct 2274 TGATTTTAAGGCAAAATCTCAAGTTAGGGGGTCCACCGATTTTCAGCATGCTGATCCATT 2333
Query 2334 GACAGCTTTAGTCCAAAATCCCCATGGCATGCCACCCGAGTGGATGCCGCCCAATGTCAG 2393
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 2334 GACAGCTTTAGTCCAAAATCCCCATGGCAT---ACCCGAGTGGATGCCACCCAATGTCAG 2390
Query 2394 TGTACCAATTTTGAACTTAGTTGATAAAGTGTTTCAGTTAAATAGAAGAGGTTGGTTAAG 2453
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2391 TGTGCCAATTTTGAACTTAGTTGATAAAGTGTTTCAGTTAAATAGAAGAGGTTGGTTAAG 2450
Query 2454 GAGACAAGTCTTCTGGATATCAAAGCAAATATTACAATTAGTTATGGAAGATGCTGTGGA 2513
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2451 GAGGCAAGTTTTCTGGATATCAAAGCAAATATTACAATTAGTTATGGAAGATGCTGTGGA 2510
Query 2514 TGACTTACTCCTGAGGGAGATATGTTGGCTGCGGAATGAAGACACAGTCGCTCAAGGAAT 2573
|||||| ||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 2511 TGACTTGCTCATGAGGGAGATATGTTGGCTGCGGAATGAAGACACAATTGCTCAAGGAAT 2570
Query 2574 TCGTTGGGCTCAAGATATTCTATGGCCAAATGGTGTATTCTTTACCAGAGTGAATGACAG 2633
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 2571 TCGTTGGGCTCAAGATATTCTATGGCCAAATGGTGTATTCTTTACCAGATTGAATGATAG 2630
Query 2634 TCAAGAGGAATTGGATGAGACCGACCCTAGTGAAAAAACTTTCCAAATAGCAGGCCAACT 2693
|||||||| || |||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 2631 TCAAGAGGCATCAGATGAGACCGACCCTAGTGAAAAAACTTACCAAATGGCAGGCCAACT 2690
Query 2694 CGGTGGCATGAAGGTGGCTAAACCCAGTTCCTTTGAGCAGCAACTCGAGGCTGCACGCAG 2753
||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 2691 TGGTGGCATGAAGGTGACTAAACCCAGTTCCTTTGAGCAGCAACTCGAGGCTTTTCGTAG 2750
Query 2754 AGCTAGAGAAATaaaaaaaTTCCTTTTCGATGGCGCCCCAACAGCCTTAGTGGGCTTGGT 2813
|||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 2751 AGCTAGTGAAATAAAAAAATTCCTTTTCGATGGCGCCCCAACAGCCTTAGTGAGTTTGGT 2810
Query 2814 AGGGCACAACCAGTACAGGAGATGTGCGAGAGACATTTTCTACTTT-ACTCAGTCAAACA 2872
||||||||| ||||||||||||||||| |||||||||||||| ||| |||||||||||||
Sbjct 2811 AGGGCACAATCAGTACAGGAGATGTGCAAGAGACATTTTCTA-TTTCACTCAGTCAAACA 2869
Query 2873 TATGCATAAAGCAACTCACATTTGCAATACTAGAGCTGCTACTCCGATCGGTGTTCCCCG 2932
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2870 TATGCATAAAGCAACTCACATTTGCAATACTGGAGCTGCTACTCCGATCGGTATTCCCCG 2929
Query 2933 AGCTGCAAGATCTGT-TAAGAGACATAAGGGAGAATCCGCACGGTCGGTCAGAGTAATAA 2991
||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2930 AGCTGCAAGATCT-TCTAAGAGACATAAGGGAGAATCCGCAAGGTCGGTCAGAGTAATAA 2988
Query 2992 CACATGTTTATATGGAGGAGGTAGCCTATGATTG-ACTTGAACCAGtttt-atctttctc 3049
|||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||
Sbjct 2989 CACATGTTTATATGGAGGAGGTAGCCTATGATTGGA-TTGAACCAGTTTTTATCTTTCTC 3047
Query 3050 tatgttaatttttgatctttttgtttcttggggattttttgGGGTCCTTCTTAGTATTCA 3109
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 3048 TATGTTAATTTTTGATCTTTC-GTTTCTTGGGGATTTTTTGGGGTCCTTCTTAATATTCT 3106
Query 3110 TCCATGTGTATAAAAACAAGTGCTAGTATCAAT 3142
|| ||||||||||||||||||||||||||||||
Sbjct 3107 TC-ATGTGTATAAAAACAAGTGCTAGTATCAAT 3138
> AT2G15910.1 | Symbols: | CSL zinc finger domain-containing protein
| chr2:6932406-6935424 REVERSE LENGTH=1706
Length=1706
Score = 444 bits (240), Expect = 3e-123
Identities = 270/283 (95%), Gaps = 7/283 (2%)
Strand=Plus/Minus
Query 2863 CAGTCAAACATATGCATAAAGCAACTCACATTTGCAATACTAGAGCTGCTACTCCGATCG 2922
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1702 CAGTCAAACATATGCATAAAGCAACTCACATTTGCAATACTGGAGCTGCTACTCCGATCG 1643
Query 2923 GTGTTCCCCGAGCTGCAAGATCTGT-TAAGAGACATAAGGGAGAATCCGCACGGTCGGTC 2981
|| |||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||
Sbjct 1642 GTATTCCCCGAGCTGCAAGATCT-TCTAAGAGACATAAGGGAGAATCCGCAAGGTCGGTC 1584
Query 2982 AGAGTAATAACACATGTTTATATGGAGGAGGTAGCCTATGATTG-ACTTGAACCAGtttt 3040
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1583 AGAGTAATAACACATGTTTATATGGAGGAGGTAGCCTATGATTGGA-TTGAACCAGTTTT 1525
Query 3041 -atctttctctatgttaatttttgatctttttgtttcttggggattttttgGGGTCCTTC 3099
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1524 TATCTTTCTCTATGTTAATTTTTGATCTTTC-GTTTCTTGGGGATTTTTTGGGGTCCTTC 1466
Query 3100 TTAGTATTCATCCATGTGTATAAAAACAAGTGCTAGTATCAAT 3142
||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 1465 TTAATATTCTTC-ATGTGTATAAAAACAAGTGCTAGTATCAAT 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 156270027445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5