BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480439

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G15960.1 | Symbols:  | unknown protein; Has 14 Blast hits to...   470    5e-132


> AT2G15960.1 | Symbols:  | unknown protein; Has 14 Blast hits 
to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:6947309-6947688 FORWARD LENGTH=380
Length=380

 Score =  470 bits (254),  Expect = 5e-132
 Identities = 312/338 (92%), Gaps = 11/338 (3%)
 Strand=Plus/Plus

Query  1    CTCTCTCGCTCATAATTAGATATTAAGATCAACAAGAA-G-AAGAATGGCAAAAGCTATG  58
            |||||||| ||||||| |||||||||||||||||| || | |||||||||||||||||||
Sbjct  1    CTCTCTCGTTCATAATGAGATATTAAGATCAACAA-AAGGAAAGAATGGCAAAAGCTATG  59

Query  59   GAGCTTTGGGTGGGAGAGATGAAGAAGATGAGTGAGAAGATAAACACTAGAAACCCATTG  118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  60   GAGCTTTGGGTGGGAGAGATGAAGAAGATGAGTGAGAAGATAAACACTAGAAATCCATTG  119

Query  119  ATGCAAAGGAACAAGACATCCTCTGTTGTGTCcaaacaacaacaaggatcagaagaagaa  178
            ||||||||||| ||  || | |||||||||||||||||||||||||||||||||||||||
Sbjct  120  ATGCAAAGGAAGAATTCAACATCTGTTGTGTCCAAACAACAACAAGGATCAGAAGAAGAA  179

Query  179  agaggactta--aac-aaaagacaagagagaaagaTGAAGCTGCAACTATGTCTGAGGTC  235
            ||||||||||  ||| ||||||  ||||||||| ||||||||| ||||||||||||| ||
Sbjct  180  AGAGGACTTATTAACCAAAAGATTAGAGAGAAAAATGAAGCTGTAACTATGTCTGAGCTC  239

Query  236  ACTGTTTGTCTTCTCATGGACCGTTTTGTTCCTTGGTGATCTTTCAATACCCAACTACTT  295
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  240  ACTGTTTGTCTTCTCATGGACCGTTTTGTTCCTTGGTGATCTTTCCATACCCAACTACTT  299

Query  296  CTAGATCAATCTCCCTAATTGGTGATGTGTATATATAT  333
            |||||||  ||| | |  ||||||||||||||||||||
Sbjct  300  CTAGATC--TCTTC-T--TTGGTGATGTGTATATATAT  332



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15532734441


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5