BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480442
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20280.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 2113 0.0
> AT2G20280.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr2:8739911-8742349 REVERSE LENGTH=1259
Length=1259
Score = 2113 bits (1144), Expect = 0.0
Identities = 1224/1262 (97%), Gaps = 7/1262 (1%)
Strand=Plus/Plus
Query 1 ATGCCTCCAAAGCAACAACCAAAGGCTGATTTGGCGAAGAAGCAGAAACAAGTGGAAGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCTCCAAAGCAACAACCAAAGGCTGATTTGGCGAAGAAGCAGAAACAAGTGGAAGAC 60
Query 61 AAAACTTTCGGATTGAAAAACAAGAACAAGAGCAAGAATGTTCAGAAGTATGTTCAGAGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAACTTTCGGATTGAAAAACAAGAACAAGAGCAAGAATGTTCAGAAGTATGTTCAGAGT 120
Query 121 CTCAAGCAATCTGTGCAGCCTAAACCCGATGCAACTAAAGCTGCAGCTAAGAAAAAGAAA 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCAAGCAATCTGTTCAGCCTAAACCCGATGCAACTAAAGCTGCAGCTAAGAAAAAGAAA 180
Query 181 GAGGAAGAGAAAGCGAGAGAACAGGAATTGAATGAGTTGTTCAAGGTAGCTATTAGTCAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGGAAGAGAAAGCGAGAGAACAGGAATTGAATGAGTTGTTCAAGGTAGCTATTAGTCAG 240
Query 241 CCGAAAGTTCCTGTAGGTGTGGATCCTAAGTCTATACTGTGTGAGTTTTTCAAGGCAGGG 300
|| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 241 CCCAAAGTTCCTGTAGGTGTGGATCCAAAGTCTATACTCTGTGAGTTTTTCAAGGCCGGG 300
Query 301 CAGTGTCAGAAGGGTTTCAAGTGCAAATTTTCTCACGATTTGAACATTCAAAGGAAGGGT 360
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 301 CAGTGTCAAAAGGGTTTCAAGTGCAAATTCTCTCATGATTTGAACATTCAAAGGAAGGGT 360
Query 361 GAGAAGATTGATATTTACAGCGATACGCGTGATGAAGATGGAGATATGGATGAGTGGGAT 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGAAGATTGATATTTACAGTGATACGCGTGATGAAGATGGAGATATGGATGAGTGGGAT 420
Query 421 CAAGAGACCCTTGAAAAGGTTGTGGAATTAAAGAAAAATGAATATAATCAGAATAAGCCA 480
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 421 CAAGAGACCCTTGAAAAGGTTGTTGAATCAAAGAAAAATGAATATAATCAGAATAAGCCA 480
Query 481 ACAGATATCGTTTGCAAGTATTTTCTGGATGCTGTGGAAAAGAAACAGTATGGGTGGTTC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACAGATATCGTTTGCAAGTATTTTCTGGATGCTGTGGAAAAGAAACAGTATGGGTGGTTC 540
Query 541 TGGTCGTGCCCCAATGGTGGCAACGAGTGTCATTACAGACACGCGCTTCCTCCTGGATAT 600
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 TGGTCATGCCCCAATGGTGGCAAAGAGTGTCATTACAGACACGCGCTTCCTCCTGGATAT 600
Query 601 GTCCTTAAATCTCAAATGAAAGCCCTCTTGGAAGAGGAGTCATCGAAGAAGCTGGCAGTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTCCTTAAATCTCAAATGAAAGCCCTCTTGGAAGAGGAGTCATCGAAGAAGCTGGCAGTT 660
Query 661 GAGGACGAAATTGAAAACGAGCGTGCAAAACTGCAAACCGCAACACAAATGACCCCTGCA 720
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 GAGGACGAAATCGAAAACGAGCGTGCAAAACTGCAAACCGCAACACAAATGACTCCTGCA 720
Query 721 CTATTTATGGAATGGAAGAGGAAGAAAATAGCTGAGAGAGATGCCGGTTTGGCTGCTTCT 780
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 CTATTTATGGAATGGAAGAGGAAGAAAATTGCTGAGAGAGATGCCGGTTTGGCTGCTTCT 780
Query 781 CAAGCAGAGAGAGCTAAGAACGACCGTATGAGTGGTCGGGAGCTGTTTCTGTCCAATGCA 840
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CAAGCGGAGAGAGCTAAGAACGACCGTATGAGTGGTCGGGAGCTGTTTCTGTCCAATGCA 840
Query 841 AGCTTGTTTGTGGATGATGCTGAGGCTTGTGAAGAATACGAGAGGGAAAGAGAGCAGGAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGCTTGTTTGTGGATGATGCTGAGGCTTGTGAAGAATACGAGAGGGAAAGAGAGCAGGAA 900
Query 901 GAGACTGAACAAAAGGCAAAGAACAAAGAAACAGAGGCAGGGACAAGCAAGAGTAGTGGT 960
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 901 GAGACTGAACAAAAGGCAAAGAACAAAGAAGCAGAGGCAGGGACAAGCAAGAGTAGTGGT 960
Query 961 GATGCTGAACAGAGTTCgaaagaagtcgatgaagaagaagaagaagatgaagacgatgat 1020
||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||
Sbjct 961 GATGCTGAACAGAGTTCGAAAGAAGTCAATGAAGAAGAAGAAGA---TGACGATGATGAT 1017
Query 1021 gatgatgacctagacatggatgagctggatgaaTTGGAAGCAAGCTTGTCGAAAACATCG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GATGATGACCTAGACATGGATGAGCTGGATGAATTGGAAGCAAGCTTGTCGAAAACATCG 1077
Query 1081 ATCCAGATTCGTGAGCCAAACAATGAAGGGTCATCTTGAGATGAAAAATGGTCTAAGAGA 1140
||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 1078 ATCCAGATTCGTGAGCCAAACGACGAAGGGTCATCTTGAAATGAAAAATGGTCTAAGAGG 1137
Query 1141 AAGAGGTGGAGGAGGAGAGAAAGCACATGTTTTGTTTT-GTGTACTTTCAATAGATTGGA 1199
|||||||||||||| ||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 1138 AAGAGGTGGAGGAG-AGA-AA-GCACATGTTTTGTTTTTGTGTACTTTCAATAGATTGGA 1194
Query 1200 TTTTGCAGACACAAATCCCATTTTGGAATGTTGAATAATCTCTGTTATTGTTTTAAAGTC 1259
||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||| ||||
Sbjct 1195 TTTTGCAGACACAAACCCCATTTTGGGGTGTTGAATAATTTCTGTTACTGTTTTACAGTC 1254
Query 1260 TT 1261
||
Sbjct 1255 TT 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5