BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480448 Length=2032 Score E Sequences producing significant alignments: (Bits) Value AT2G20210.1 | Symbols: | RNI-like superfamily protein | chr2:8... 3077 0.0 > AT2G20210.1 | Symbols: | RNI-like superfamily protein | chr2:8721437-8725127 REVERSE LENGTH=2069 Length=2069 Score = 3077 bits (1666), Expect = 0.0 Identities = 1918/2040 (94%), Gaps = 16/2040 (1%) Strand=Plus/Plus Query 1 TGCAGCGGGAAGATTTGGGTTGCGTAGAGCGATTCACACTCTCTTCTCTTTGTTAGGATG 60 |||||||||||| ||| |||||||| |||||| |||||||||||||||||| ||||| Sbjct 32 TGCAGCGGGAAG-TTTTGGTTGCGT--TGCGATTGGCACTCTCTTCTCTTTGTTTGGATG 88 Query 61 ACGAAAGCTCCTTCTCTTGCGTTTCTCTGCATCCAATCTCTCAAACTTCAGCTCCTTCAA 120 |||||||||||||||||||||||||||||||||||||| |||||| ||||||| || || Sbjct 89 ACGAAAGCTCCTTCTCTTGCGTTTCTCTGCATCCAATCCCTCAAAATTCAGCTTCTAGAA 148 Query 121 AGCGATAATCCAATTCCAGATTTATACGAGCTTCCATCGGAGTTACTTGAT-GCTGTTAT 179 ||||||||||||||||||||||||||||||||||||||||||||||||||| || || | Sbjct 149 AGCGATAATCCAATTCCAGATTTATACGAGCTTCCATCGGAGTTACTTGATGGC-ATTGT 207 Query 180 CGCTCACTTGCCTGCTCTTGCGTTGCAGAATTTTCAGACCAACATGCCGTTTAATTGCTT 239 ||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| Sbjct 208 CGCTCACTTGCCTGCTCTTGCTTTGCAGAAGTTTCAGACCAACATGCCGTTTCATTGCTT 267 Query 240 GGATAATTATGAATCTGGAGATGA-T--TGCTTGATTAATGGCAGAAAACGTTCAAGCAG 296 ||||| |||||||||||||||||| | |||||||||| ||| ||||||||| | | || Sbjct 268 GGATAGTTATGAATCTGGAGATGATTGCTGCTTGATTACTGGGAGAAAACGTGC-A--AG 324 Query 297 AAATGATCCACTTGGTAGCTCTTGGAAGATGTTGTTTAAGCTGCGGTGGCCTGAGTTTGT 356 ||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 325 AAATGATGTACTTGGTAGCTCTTGGAAGTTGTTGTTTAAGCTGCGGTGGCCTGATTTTGT 384 Query 357 TGACCGTGTGGAATCACCAGCTGATTGGCAACAGCTTTACTGGGAAAAGCATCTGCAAAA 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 385 TGACCGTGTGGAATCACCAGCTGATTGGCAACAGCTTTACTGGGAAAAGCATCTCCAAAA 444 Query 417 TTGTGTTGATGAAGCAGCTGAGGTTGCTCTGCGTCCGACATTTAGTGGTCGGATTTGTTC 476 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 445 TTGTGTTGATGAAGCAGCTGAGGTAGCTCTGCGTCCGACATTTAGTGGTCGGATTTGTTC 504 Query 477 TATTAATGTATCAGATAACATATTGAGATACATTTGCCATGAAGAG--CAT-ATGACTTG 533 ||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 505 CATTAATGTATCTGATAACATATTGAGATACATTTGCCATGAAGAGCACATCATGACTTG 564 Query 534 TCAAAAATGTGTCTGCAAGGAACTATCTTTTCATTTCCAAACTTTTGGACCGTATCTTAG 593 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 565 TCAAAATTGTGTCTGCAAGGAACTATCTTTTCATTTCCAAACTTTTGGACCATATCTTAG 624 Query 594 GTGTCTGAGGCTTCTGAATGTGCTATGCGTTACAGAAACTTCTGAGTTATTGAGGACAAG 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 625 GTGTCTGAGGCTTCTGAATGTGCTATGCGTTACAGAAACTTCTGAGTTATTGAGGACAAG 684 Query 654 TAAATTGCAAAGTTTGGTTCTACGTTGGATCAGATCCGAGAAGCATGTTGAGCCCTTGTG 713 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 685 TAAATTGCGAAGTTTGGTTCTACGTTGGATCAGATCCGAGAAGCATGTTGAGCCCTTGTG 744 Query 714 CAAGCTCTTGATCCAGACCCGAGACACCTTAATTTCGCTTGAGTTTATTCACTGCAAGCT 773 |||||||||||| |||| |||||| || |||| ||||||||| |||||||||||||||| Sbjct 745 CAAGCTCTTGATTCAGAGCCGAGAAACATTAACTTCGCTTGAACTTATTCACTGCAAGCT 804 Query 774 TTCTTCGAGTTCCATCAGTGCAATATGCGCTTCTCTTCATGAAAAGGGTATCCACACTAC 833 ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 805 TTCTTTGAGTTCCATCAGTGCAATATGCACTTCTCTTCATGAAAAGGGTATCCACACAAC 864 Query 834 TGGGATGCAACGTTTCTGTATAAAGACATCTAGCATTGAGATAGATCCACTTGCTGCACC 893 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 865 TGGGATGCAACGTTTCTGTATAAAGACATCTAGCATTGAGATAGATCCACTTGCTGCGCC 924 Query 894 TTCTGCTTTCGTTTCATTCCTGATGTCGGTGAGGACCTTACATTCCTTACATTTTTGCGA 953 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 925 TTCCGCTTTCGTTTCATTCCTGATGTCGGTGAGGACCTTACATTCCTTACATTTTGGCGA 984 Query 954 TAGCAACCTTGATAGGCATATCGCGAGGATGGTTTTCTCTACACTTCTTGATTCTTCTTC 1013 ||||||||| ||||| || | |||||||||||||||||||||||||||||||||||||| Sbjct 985 TAGCAACCTCGATAGATATTTTGCGAGGATGGTTTTCTCTACACTTCTTGATTCTTCTTC 1044 Query 1014 AAACCTTTCGTCCCTTGATCTCTCTGAAAACAATATTTCAGGATGGCTTTCTACGTTTAG 1073 |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1045 CAACCTTTCATCCCTTGACCTCTCTGAAAACAATATTTCAGGATGGCTTTCTACTTTTAG 1104 Query 1074 CTGCAGATCTGTTGTTGGTTCTCTGTCATCCGGAAAGTCTTTACAGTCCCTGTGCAAGCT 1133 ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1105 CTGCAAATCTGTTGTTGGTTCTCTGTCATCTGGAAAGTCTTTACAGTCCCTGTGCAAGCT 1164 Query 1134 CAACTTAAGGGGAAATGAACTCGACAGATACGATGCAGAGAATCTTGCACATGCTCTTCT 1193 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1165 CAACTTAAGGGGAAATGAACTTGACAGATACGATGCAGAGAATCTTGCACATGCTCTACT 1224 Query 1194 TCATATGCCCGGCTTGGAATCTCTTGACCTGAGCGGGAACCCCATTGAAGACAGTGGGAT 1253 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1225 TCATATGCCTGGCTTGGAATCTCTTGACCTGAGCGGGAACCCCATTGAAGACAGTGGGAT 1284 Query 1254 CAGAAGCTTAATATCTTACTTCACAAAGAATCCGGATTCTCGTTTAGCCGATTTGGATTT 1313 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1285 CAGAAGCTTAATATCTTACTTCACAAAGAATCCGGATTCTCGTTTAGCCGATCTGAATTT 1344 Query 1314 GGAAAACTGTGAGCTGTCATGTTGTGGAGTTATCGAGTTTCTTGATACCTTCTCAATGCT 1373 ||| ||||||||||| ||||||||||||||||| ||||||||||||||| | || ||||| Sbjct 1345 GGAGAACTGTGAGCTATCATGTTGTGGAGTTATTGAGTTTCTTGATACCCTGTCGATGCT 1404 Query 1374 GGAGAAGCCTATAAAGTTCCTATCTGTTGCAGATAATGCCCTCGGAAGTGAGGTTGCGGA 1433 |||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||| || Sbjct 1405 GGAGAAACCTTTAAAGTTCCTGTCTGTTGCAGATAATGCCCTCGGAAGCGAGGTTGCAGA 1464 Query 1434 GGCTATAGTAAACTCTATCACAGTCTCCATTGAGTCTCTCAACATT-TCGGGTATAGGAC 1492 |||| ||||||||||| ||||| ||||||| ||||| ||||| ||| | ||||||||||| Sbjct 1465 GGCTGTAGTAAACTCTTTCACAATCTCCATCGAGTCGCTCAATATTAT-GGGTATAGGAC 1523 Query 1493 TAGGTCCTCTCGGGTTTCTTGCGCTAGGCAGAAAACTTGAAAAAGGGTTGAAGAAGCTCC 1552 |||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| | Sbjct 1524 TAGGTCCTCTCGGGTTTCTTGCATTAGGCAGAAAACTTGAAAAAGTGTCGAAGAAGCTGC 1583 Query 1553 TGAGTATCAATATAAGCAAAAACCGTGGAGGACTAGAGACTGCTAGATTCCTGTCAAAGC 1612 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1584 TGAGTATTAATATAAGCAAAAACCGTGGAGGACTAGAGACCGCTAGATTCCTGTCAAAGC 1643 Query 1613 TCATACCCTTGGCACCAAAACTCATCTCAATCGACGCATCCTACAATCTTATGCCACCCG 1672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1644 TCATACCCTTGGCACCAAAACTCATCTCAATCGACGCATCCTACAATCTTATGCCACCTG 1703 Query 1673 AAGCCTTGCTCATGCTATGTGAATCCCTGAGAACTGCAAAATGTGATCTCAAACATCTTG 1732 |||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| Sbjct 1704 AAGCCTTGCTCATGCTATGTGATTCCCTGAGAACTGCAAAAGGTGATCTCAAACGTCTTG 1763 Query 1733 ACATGACCGGGAATAGCTGCATCAGCCATGAAGCTAACCATTCTTCTCTACACCGTGAAT 1792 ||||||| |||||||| ||||||||||| |||||| ||||||||||||||| || ||||| Sbjct 1764 ACATGACTGGGAATAGTTGCATCAGCCACGAAGCTGACCATTCTTCTCTACTCCATGAAT 1823 Query 1793 TTCAACACAACGGAGAACCCATCTTCGTTTTACCTTCATCCTCGGTTTCACATGTTCCTT 1852 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1824 TTCAACACAACGGAGAACCCATCTTCGTTTTACCTTCATCCTCGGTTTCACATGTTCCTT 1883 Query 1853 ACGATGATGACCCGTAGATAATTCCTCTAGACCTGTTTATCCTTTAGTCTGGTTCTGTTT 1912 |||||||||||||||||||| ||||| || ||| |||||||||| ||||||| |||||| Sbjct 1884 ACGATGATGACCCGTAGATAGTTCCTATATACCGGTTTATCCTTCAGTCTGGAACTGTTT 1943 Query 1913 ACTGGTGAATTCATTGGTTATGTATGTGCATTAGGTTGGCTCAACGTTCACATGAAATAG 1972 ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 1944 ACTGGTGAATTCATTGGTTGTGTATGTGCATTAGGTTGGTTCAACGTTCACATGAAATAG 2003 Query 1973 CATCCCAAAACATCTAAAAGCGTCGCCCaaaaaaaTAGTCAGAGAGCAGTGATTTAAATC 2032 ||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||||| Sbjct 2004 CATCCCAAAACATCTTAAACCGTCGCCTAAAAAAATAGTCAGAGAGCAGTGGTTTAAATC 2063 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100702293270 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5