BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480448
Length=2032
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20210.1 | Symbols: | RNI-like superfamily protein | chr2:8... 3077 0.0
> AT2G20210.1 | Symbols: | RNI-like superfamily protein | chr2:8721437-8725127
REVERSE LENGTH=2069
Length=2069
Score = 3077 bits (1666), Expect = 0.0
Identities = 1918/2040 (94%), Gaps = 16/2040 (1%)
Strand=Plus/Plus
Query 1 TGCAGCGGGAAGATTTGGGTTGCGTAGAGCGATTCACACTCTCTTCTCTTTGTTAGGATG 60
|||||||||||| ||| |||||||| |||||| |||||||||||||||||| |||||
Sbjct 32 TGCAGCGGGAAG-TTTTGGTTGCGT--TGCGATTGGCACTCTCTTCTCTTTGTTTGGATG 88
Query 61 ACGAAAGCTCCTTCTCTTGCGTTTCTCTGCATCCAATCTCTCAAACTTCAGCTCCTTCAA 120
|||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||
Sbjct 89 ACGAAAGCTCCTTCTCTTGCGTTTCTCTGCATCCAATCCCTCAAAATTCAGCTTCTAGAA 148
Query 121 AGCGATAATCCAATTCCAGATTTATACGAGCTTCCATCGGAGTTACTTGAT-GCTGTTAT 179
||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 149 AGCGATAATCCAATTCCAGATTTATACGAGCTTCCATCGGAGTTACTTGATGGC-ATTGT 207
Query 180 CGCTCACTTGCCTGCTCTTGCGTTGCAGAATTTTCAGACCAACATGCCGTTTAATTGCTT 239
||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||
Sbjct 208 CGCTCACTTGCCTGCTCTTGCTTTGCAGAAGTTTCAGACCAACATGCCGTTTCATTGCTT 267
Query 240 GGATAATTATGAATCTGGAGATGA-T--TGCTTGATTAATGGCAGAAAACGTTCAAGCAG 296
||||| |||||||||||||||||| | |||||||||| ||| ||||||||| | | ||
Sbjct 268 GGATAGTTATGAATCTGGAGATGATTGCTGCTTGATTACTGGGAGAAAACGTGC-A--AG 324
Query 297 AAATGATCCACTTGGTAGCTCTTGGAAGATGTTGTTTAAGCTGCGGTGGCCTGAGTTTGT 356
||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 325 AAATGATGTACTTGGTAGCTCTTGGAAGTTGTTGTTTAAGCTGCGGTGGCCTGATTTTGT 384
Query 357 TGACCGTGTGGAATCACCAGCTGATTGGCAACAGCTTTACTGGGAAAAGCATCTGCAAAA 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 385 TGACCGTGTGGAATCACCAGCTGATTGGCAACAGCTTTACTGGGAAAAGCATCTCCAAAA 444
Query 417 TTGTGTTGATGAAGCAGCTGAGGTTGCTCTGCGTCCGACATTTAGTGGTCGGATTTGTTC 476
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 445 TTGTGTTGATGAAGCAGCTGAGGTAGCTCTGCGTCCGACATTTAGTGGTCGGATTTGTTC 504
Query 477 TATTAATGTATCAGATAACATATTGAGATACATTTGCCATGAAGAG--CAT-ATGACTTG 533
||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 505 CATTAATGTATCTGATAACATATTGAGATACATTTGCCATGAAGAGCACATCATGACTTG 564
Query 534 TCAAAAATGTGTCTGCAAGGAACTATCTTTTCATTTCCAAACTTTTGGACCGTATCTTAG 593
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 565 TCAAAATTGTGTCTGCAAGGAACTATCTTTTCATTTCCAAACTTTTGGACCATATCTTAG 624
Query 594 GTGTCTGAGGCTTCTGAATGTGCTATGCGTTACAGAAACTTCTGAGTTATTGAGGACAAG 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 GTGTCTGAGGCTTCTGAATGTGCTATGCGTTACAGAAACTTCTGAGTTATTGAGGACAAG 684
Query 654 TAAATTGCAAAGTTTGGTTCTACGTTGGATCAGATCCGAGAAGCATGTTGAGCCCTTGTG 713
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 TAAATTGCGAAGTTTGGTTCTACGTTGGATCAGATCCGAGAAGCATGTTGAGCCCTTGTG 744
Query 714 CAAGCTCTTGATCCAGACCCGAGACACCTTAATTTCGCTTGAGTTTATTCACTGCAAGCT 773
|||||||||||| |||| |||||| || |||| ||||||||| ||||||||||||||||
Sbjct 745 CAAGCTCTTGATTCAGAGCCGAGAAACATTAACTTCGCTTGAACTTATTCACTGCAAGCT 804
Query 774 TTCTTCGAGTTCCATCAGTGCAATATGCGCTTCTCTTCATGAAAAGGGTATCCACACTAC 833
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 805 TTCTTTGAGTTCCATCAGTGCAATATGCACTTCTCTTCATGAAAAGGGTATCCACACAAC 864
Query 834 TGGGATGCAACGTTTCTGTATAAAGACATCTAGCATTGAGATAGATCCACTTGCTGCACC 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 865 TGGGATGCAACGTTTCTGTATAAAGACATCTAGCATTGAGATAGATCCACTTGCTGCGCC 924
Query 894 TTCTGCTTTCGTTTCATTCCTGATGTCGGTGAGGACCTTACATTCCTTACATTTTTGCGA 953
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 925 TTCCGCTTTCGTTTCATTCCTGATGTCGGTGAGGACCTTACATTCCTTACATTTTGGCGA 984
Query 954 TAGCAACCTTGATAGGCATATCGCGAGGATGGTTTTCTCTACACTTCTTGATTCTTCTTC 1013
||||||||| ||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 985 TAGCAACCTCGATAGATATTTTGCGAGGATGGTTTTCTCTACACTTCTTGATTCTTCTTC 1044
Query 1014 AAACCTTTCGTCCCTTGATCTCTCTGAAAACAATATTTCAGGATGGCTTTCTACGTTTAG 1073
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1045 CAACCTTTCATCCCTTGACCTCTCTGAAAACAATATTTCAGGATGGCTTTCTACTTTTAG 1104
Query 1074 CTGCAGATCTGTTGTTGGTTCTCTGTCATCCGGAAAGTCTTTACAGTCCCTGTGCAAGCT 1133
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1105 CTGCAAATCTGTTGTTGGTTCTCTGTCATCTGGAAAGTCTTTACAGTCCCTGTGCAAGCT 1164
Query 1134 CAACTTAAGGGGAAATGAACTCGACAGATACGATGCAGAGAATCTTGCACATGCTCTTCT 1193
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1165 CAACTTAAGGGGAAATGAACTTGACAGATACGATGCAGAGAATCTTGCACATGCTCTACT 1224
Query 1194 TCATATGCCCGGCTTGGAATCTCTTGACCTGAGCGGGAACCCCATTGAAGACAGTGGGAT 1253
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 TCATATGCCTGGCTTGGAATCTCTTGACCTGAGCGGGAACCCCATTGAAGACAGTGGGAT 1284
Query 1254 CAGAAGCTTAATATCTTACTTCACAAAGAATCCGGATTCTCGTTTAGCCGATTTGGATTT 1313
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1285 CAGAAGCTTAATATCTTACTTCACAAAGAATCCGGATTCTCGTTTAGCCGATCTGAATTT 1344
Query 1314 GGAAAACTGTGAGCTGTCATGTTGTGGAGTTATCGAGTTTCTTGATACCTTCTCAATGCT 1373
||| ||||||||||| ||||||||||||||||| ||||||||||||||| | || |||||
Sbjct 1345 GGAGAACTGTGAGCTATCATGTTGTGGAGTTATTGAGTTTCTTGATACCCTGTCGATGCT 1404
Query 1374 GGAGAAGCCTATAAAGTTCCTATCTGTTGCAGATAATGCCCTCGGAAGTGAGGTTGCGGA 1433
|||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 1405 GGAGAAACCTTTAAAGTTCCTGTCTGTTGCAGATAATGCCCTCGGAAGCGAGGTTGCAGA 1464
Query 1434 GGCTATAGTAAACTCTATCACAGTCTCCATTGAGTCTCTCAACATT-TCGGGTATAGGAC 1492
|||| ||||||||||| ||||| ||||||| ||||| ||||| ||| | |||||||||||
Sbjct 1465 GGCTGTAGTAAACTCTTTCACAATCTCCATCGAGTCGCTCAATATTAT-GGGTATAGGAC 1523
Query 1493 TAGGTCCTCTCGGGTTTCTTGCGCTAGGCAGAAAACTTGAAAAAGGGTTGAAGAAGCTCC 1552
|||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| |
Sbjct 1524 TAGGTCCTCTCGGGTTTCTTGCATTAGGCAGAAAACTTGAAAAAGTGTCGAAGAAGCTGC 1583
Query 1553 TGAGTATCAATATAAGCAAAAACCGTGGAGGACTAGAGACTGCTAGATTCCTGTCAAAGC 1612
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1584 TGAGTATTAATATAAGCAAAAACCGTGGAGGACTAGAGACCGCTAGATTCCTGTCAAAGC 1643
Query 1613 TCATACCCTTGGCACCAAAACTCATCTCAATCGACGCATCCTACAATCTTATGCCACCCG 1672
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1644 TCATACCCTTGGCACCAAAACTCATCTCAATCGACGCATCCTACAATCTTATGCCACCTG 1703
Query 1673 AAGCCTTGCTCATGCTATGTGAATCCCTGAGAACTGCAAAATGTGATCTCAAACATCTTG 1732
|||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||
Sbjct 1704 AAGCCTTGCTCATGCTATGTGATTCCCTGAGAACTGCAAAAGGTGATCTCAAACGTCTTG 1763
Query 1733 ACATGACCGGGAATAGCTGCATCAGCCATGAAGCTAACCATTCTTCTCTACACCGTGAAT 1792
||||||| |||||||| ||||||||||| |||||| ||||||||||||||| || |||||
Sbjct 1764 ACATGACTGGGAATAGTTGCATCAGCCACGAAGCTGACCATTCTTCTCTACTCCATGAAT 1823
Query 1793 TTCAACACAACGGAGAACCCATCTTCGTTTTACCTTCATCCTCGGTTTCACATGTTCCTT 1852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1824 TTCAACACAACGGAGAACCCATCTTCGTTTTACCTTCATCCTCGGTTTCACATGTTCCTT 1883
Query 1853 ACGATGATGACCCGTAGATAATTCCTCTAGACCTGTTTATCCTTTAGTCTGGTTCTGTTT 1912
|||||||||||||||||||| ||||| || ||| |||||||||| ||||||| ||||||
Sbjct 1884 ACGATGATGACCCGTAGATAGTTCCTATATACCGGTTTATCCTTCAGTCTGGAACTGTTT 1943
Query 1913 ACTGGTGAATTCATTGGTTATGTATGTGCATTAGGTTGGCTCAACGTTCACATGAAATAG 1972
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1944 ACTGGTGAATTCATTGGTTGTGTATGTGCATTAGGTTGGTTCAACGTTCACATGAAATAG 2003
Query 1973 CATCCCAAAACATCTAAAAGCGTCGCCCaaaaaaaTAGTCAGAGAGCAGTGATTTAAATC 2032
||||||||||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2004 CATCCCAAAACATCTTAAACCGTCGCCTAAAAAAATAGTCAGAGAGCAGTGGTTTAAATC 2063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100702293270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5