BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480452
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20170.1 | Symbols: | Protein of Unknown Function (DUF239) ... 2015 0.0
AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-... 78.7 1e-13
> AT2G20170.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:8701013-8704357 FORWARD LENGTH=1460
Length=1460
Score = 2015 bits (1091), Expect = 0.0
Identities = 1349/1472 (92%), Gaps = 24/1472 (2%)
Strand=Plus/Plus
Query 1 ATGAGGTCATGCACTAATAAGCTTATCCTTCTGACTTTTTAT-ACAATAACTCTCATTTT 59
|||||||||||||| |||||||||||| |||| ||||| | |||||||||||||| ||
Sbjct 1 ATGAGGTCATGCAC---TAAGCTTATCCTACTGAATTTTT-TCACAATAACTCTCATCTT 56
Query 60 AGTTACAGAGAGTCGAAGAACAATACCATTGAAAAAGGAGAAACAAGAGCTCGAGAAACT 119
|||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 57 AGTTACGGAGAGTCGAAGAACAATACCATTGAAAAATGAGAAACAAGAGCTCAAGAAACT 116
Query 120 ACTCAACCATATTAATAAACCAGCAATAAAAAGTTTCCAAACGAAACATGGTTATATATT 179
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 117 ACTCAACCATATTAATAAACCCGCAATAAAAAGTTTCCAAACGAAACATGGTTATATATT 176
Query 180 AGACTGCATCGACATTCAAAAGCAGCTAGCCTTTGATCATCCTTCGCTCAAAAACCATTC 239
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 177 GGACTGCATCGACATTCAAAAGCAGCTCGCCTTTGATCATCCTTTGCTCAAAAACCATTC 236
Query 240 TATTCAGTTGAAGCCTACAACCATACCTAAATGGACAAGAGATAAAATCACTTCTCAAAA 299
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 237 TATTCAGTTGAAGCCTACAATCATACCTAAATGGACAAGAGATAAAA--AC-ACTCAAAA 293
Query 300 ATCAAGTTCTCTACCATTTCGACAAGATGAAGACATAAGTTGTCCGCTTGGAACAGTGAT 359
|||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 294 ATCAAGTTCTCTGCCATTTCGACAAGATGAAGACATAAGTTGTCCACATGGAACAGTGAT 353
Query 360 TATTAAAAGAACTACACTTGAAGAACTTATACAAATTCAACGTATGAAATCTTTAGGGTT 419
|||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| |
Sbjct 354 TATTAAAAGAACTACACTTGAAGATCTTATACAAATTCAACGTTTGAAATATTTAGGGGT 413
Query 420 TAAGTATACAACTTCAGAAGACAATAACGTCCTCAATATGACCAGCCGTCATTTTGCGAT 479
|||||||||||||||| ||||||| | |||||||||||||| | ||||||||||| ||
Sbjct 414 TAAGTATACAACTTCAAAAGACAAGGATTTCCTCAATATGACCGGTCGTCATTTTGCTAT 473
Query 480 AGCTGAATACTATAAAGACAATTATGGAGCAACGGGAAACATAAATATATGGGATCCGCC 539
|||||||||||||| |||||| |||||||||||||||||||||||| |||||||||| ||
Sbjct 474 AGCTGAATACTATAGAGACAACTATGGAGCAACGGGAAACATAAATTTATGGGATCCACC 533
Query 540 TGTCGAA-CCTGATCAATTTAGTCTTGCAAGTATATATGTCGAGAACGGCCTTAGAAACA 598
|||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 534 TGTC-AACCCTGATCAATTTAGTCTTGCAAGTATATATGTCGAGAACGGTTTTAGAGACA 592
Query 599 ATTTACAAAGCATTTCAGCTGGATGGATAGTGTCCCCGAAACTAAATCAAAATCATAGTG 658
|||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 593 GTTTACAGAGCATTTCAGCTGGATGGATAGTGTCCCCGAAACTAAATCAGAATAATAGTG 652
Query 659 GCTTATTTACATATTGGACGGCAGATGGGCATGAGAAGACAGGTTGCTACAATACAGTAT 718
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 653 GCTTATTTACATATTGGACCGCAGATGGACATGAGAAGACAGGTTGCTACAATACAGTAT 712
Query 719 GTCCCGGATTTGTACAAGTGAGTAGCAAG-TCGGCACTTGGAACTCTTGCCAAACCAGTT 777
|||| || ||||||||||||||||||||| ||| |||||||||||||||||| |||| |
Sbjct 713 GTCCAGGGTTTGTACAAGTGAGTAGCAAGCTCG-CACTTGGAACTCTTGCCAGACCAACT 771
Query 778 TCCACTTATGGTGGTGAACAATATTATTTAGAAGCCATCATTTATCAGGATAATGTTACA 837
|||||||||| ||| |||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct 772 TCCACTTATGATGGCGAACAATACTATTTACAAGCCATCATTTATCAGGATAATATTACA 831
Query 838 GGAAACTGGTGGTTTTTGCTAAAGAACGAGCCAGTTGGGTATTGGCCAAGATCATTGTTT 897
|||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||
Sbjct 832 GGAAACTGGTGGTTTTTGATAAAGAACGAGCCAATTGGGTATTGGCCAAAATCATTGTTT 891
Query 898 CATGTTGATGGTTTAGCTAATGGAGCAAGTCGGGTGTTTTGGGGAGGAGAAGTTTTCAAT 957
|||||| | ||||||||| ||||||||||||| ||||||||||||||||||||||||| |
Sbjct 892 CATGTTCAAGGTTTAGCTTATGGAGCAAGTCGTGTGTTTTGGGGAGGAGAAGTTTTCAGT 951
Query 958 GCAGTGAGACAGAGCACAAACCCAATCATGGGAAGTGGACATTTCCCACAAGAAGGTTTC 1017
||| |||||||||| |||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 952 GCACTGAGACAGAGTACAAGCCCACTCATGGGAAGTGGACATTTCCCAAAAGAAGGTTTC 1011
Query 1018 AAAAAGGCAGCTTTTGTGAATGGTCTTAAAGTGATCGATCGTGAAGTAGAAAAAATTAGA 1077
|||||||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||
Sbjct 1012 AAAAAGGCAGCTTTTGTGAACGGCCTTAAAGTGATAGATCGTGAAATAGAAAAAATTAGA 1071
Query 1078 AGTCCACCAACTAAAGATTTAATATTATTCGCAAACA-CTCCAAAATGTTATAAAGTCGA 1136
||||||||| ||||||||||| |||||||||||||| | ||||||||||||||||||||
Sbjct 1072 AGTCCACCAGTTAAAGATTTAAGATTATTCGCAAACAGC-CCAAAATGTTATAAAGTCGA 1130
Query 1137 AACAAAATCAGGGGTTGGTGAGGAGTGGTCTAGTGCAATTTACTATGGAGGACCAGGAGG 1196
||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1131 AACAAAAACAGGGGTCGGTGAGGAGTGGTCTAGTGCAATTTTCTATGGAGGACCAGGAGG 1190
Query 1197 ATGCATAATTACTTAACAAATCTTCAAGTTTTTGG-ATATTGGGAGTGGAATATATGTGT 1255
||||| ||||||||||||||||| |||| ||||| | |||||||||||| || |||
Sbjct 1191 ATGCACCATTACTTAACAAATCTTTAAGTCTTTGGGAC-TTGGGAGTGGAACATTTGTAA 1249
Query 1256 ATATTAACTGATATTGATTCCTTAGGATTTGCTTT-GTCAAAAGTAATAATAAGAGACGA 1314
||||| |||| || | || | | || ||||||| ||||||||||||||||| ||||||
Sbjct 1250 ATATTCACTGTTAA-GCTTAATCAAGAATTGCTTTCGTCAAAAGTAATAATAATAGACGA 1308
Query 1315 GAAA-GAATAATGATCGGCTCTCTAAGTATAACAACCTGAGAAGAGAGAACaaaacaaaa 1373
|||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1309 GAAAAGAATAATGATCGGCTCTCTAAGTATA-CAACCTGAGAAGAGAGGACAAAACAAAC 1367
Query 1374 caaaaaaaaaCAAGAAACAGATGGC-A-ATATA--CATGTTAGATTCCTTGGTACTACTT 1429
|||| |||||||||||||||||||| | ||||| ||||||||||||||| |||||||
Sbjct 1368 CAAAGAAAAACAAGAAACAGATGGCGATATATATACATGTTAGATTCCTTACTACTACTC 1427
Query 1430 ACCCTGCTCGAACTTGGGTACGATGTTGCTTG 1461
||||||||||||||||| ||||||||||||||
Sbjct 1428 ACCCTGCTCGAACTTGGATACGATGTTGCTTG 1459
> AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor
3-like 5 | chr2:8704024-8706547 REVERSE LENGTH=1867
Length=1867
Score = 78.7 bits (42), Expect = 1e-13
Identities = 48/51 (94%), Gaps = 0/51 (0%)
Strand=Plus/Minus
Query 1411 AGATTCCTTGGTACTACTTACCCTGCTCGAACTTGGGTACGATGTTGCTTG 1461
||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1416 AGATTCCTTACTACTACTCACCCTGCTCGAACTTGGGTACGATGTTGCTTG 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72037782075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5