BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480455
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20140.1 | Symbols: | AAA-type ATPase family protein | chr2... 2326 0.0
AT4G29040.1 | Symbols: RPT2a | regulatory particle AAA-ATPase 2... 1748 0.0
> AT2G20140.1 | Symbols: | AAA-type ATPase family protein | chr2:8692700-8695084
FORWARD LENGTH=1615
Length=1615
Score = 2326 bits (1259), Expect = 0.0
Identities = 1364/1415 (96%), Gaps = 6/1415 (0%)
Strand=Plus/Plus
Query 29 agagagaCGAAGCAAAAATGGGTCAAGGACCATCCGGCGGATTGAATCGGCAAGGAGATC 88
||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 21 AGAGAGACGAAGC-ACAATGGGTCAAGGACCTTCCGGCGGATTGAATCGGCAAGGAGATC 79
Query 89 GGAAACCAGATGGTGGTGACAAGAAAGAGAAGAAGTTCGAACCAGCCGCACCACCTGCTC 148
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 80 GGAAACCAGATGGTGGAGAGAAGAAGGAGAAGAAGTTCGAACCAGCCGCACCACCTGCTC 139
Query 149 GTGTAGGGAGGAAGCAACGGAAGCAAAAAGGACCTGAAGCGGCGGCGAGATTGCCGACGG 208
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 140 GTGTAGGGAGGAAGCAACGGAAGCAGAAAGGACCTGAAGCGGCGGCGAGATTGCCGACGG 199
Query 209 TGACTCCTTCTACTAAATGTAAGCTTCGATTGCTTAAACTGGAGCGAATCAAGGACTATT 268
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 200 TGACTCCTTCTACTAAATGTAAGCTTCGATTGCTGAAATTGGAGCGAATCAAGGACTATT 259
Query 269 TGCTTATGGAGGAAGAGTTTGTGGCGAATCAGGAGAGATTGAAACCTCAGGAAGAGAAAG 328
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 260 TGCTTATGGAGGAAGAGTTCGTAGCGAATCAGGAGAGATTGAAACCTCAGGAAGAGAAAG 319
Query 329 CTGAGGAAGATAGATCTAAAGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGCAATC 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 CTGAGGAAGATAGATCTAAAGTTGATGATCTTCGTGGTACACCTATGAGTGTTGGCAATC 379
Query 389 TTGAAGAGCTTATTGATGAGAATCACGCCATTGTTTCTTCTTCTGTTGGTCCTGAGTATT 448
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 380 TTGAAGAGCTTATTGATGAGAATCACGCCATTGTTTCTTCTTCGGTTGGTCCTGAGTACT 439
Query 449 ACGTTGGGATTTTGTCTTTCGTTGATAAGGATCAGCTTGAACCTGGTTGCTCCATTTTGA 508
||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 440 ACGTTGGCATTTTGTCTTTCGTTGATAAGGATCAGCTTGAACCTGGCTGCTCTATTTTGA 499
Query 509 TGCATAACAAGGTACTCTCTGTTGTTGGGATTCTTCAAGATGAAGTGGATCCAATGGTGT 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 TGCATAACAAGGTACTCTCTGTTGTTGGGATTCTTCAAGATGAAGTGGATCCAATGGTGT 559
Query 569 CTGTGATGAAAGTGGAGAAAGCTCCTTTGGAATCATATGCTGACATTGGAGGTTTAGAAG 628
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 560 CTGTGATGAAAGTGGAGAAGGCTCCTTTGGAGTCATATGCTGACATTGGAGGTTTAGAAG 619
Query 629 CTCAGATTCAGGAGATCAAGGAAGCTGTTGAGCTACCTTTAACACATCCCGAGTTGTATG 688
|||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 620 CTCAGATTCAGGAGATTAAGGAAGCTGTTGAGTTACCTTTAACACATCCCGAGCTGTATG 679
Query 689 AAGATATCGGTATTAAGCCACCAAAAGGTGTGATCTTGTATGGTGAGCCAGGCACTGGGA 748
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 AAGATATTGGAATTAAGCCACCAAAAGGTGTGATCTTGTATGGTGAGCCAGGCACTGGGA 739
Query 749 AGACATTGCTTGCTAAGGCAGTGGCGAATTCTACATCAGCTACTTTCTTGCGTGTTGTCG 808
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 740 AGACATTGCTTGCTAAGGCAGTGGCAAATTCTACTTCAGCTACTTTCTTGCGTGTTGTCG 799
Query 809 GTAGTGAACTGATTCAGAAGTATTTGGGAGATGGTCCCAAGCTTGTGAGGGAGCTTTTCA 868
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 800 GTAGTGAACTGATTCAGAAGTATTTAGGAGATGGTCCCAAGCTTGTGAGGGAACTTTTCA 859
Query 869 GGGTTGCCGATGACCTTTCACCATCTATTGTTTTCATAGACGAGATTGATGCTGTTGGCA 928
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 860 GGGTTGCTGATGACCTTTCTCCTTCTATTGTTTTCATAGACGAGATTGATGCTGTTGGCA 919
Query 929 CCAAGCGGTATGACGCAAACTCAGGTGGTGAACGTGAAATCCAAAGAACCATGTTGGAAC 988
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 920 CCAAGCGGTATGACGCAAACTCAGGTGGGGAACGTGAAATCCAAAGAACCATGTTGGAAC 979
Query 989 TACTGAACCAGCTTGATGGATTTGATTCAAGAGGAGATGTTAAGGTAATTCTCGCGACAA 1048
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 980 TACTGAACCAGCTTGATGGGTTTGATTCAAGAGGAGATGTTAAGGTTATTCTCGCGACAA 1039
Query 1049 ACAGAATCGAAAGTCTTGACCCGGCACTTCTTAGACCAGGCCGGATCGACAGGAAAATCG 1108
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 ACAGGATCGAGAGTCTTGACCCGGCACTTCTTAGACCAGGCCGGATCGACAGGAAAATCG 1099
Query 1109 AGTTCCCTCTTCCAGATATCAAAACAAGGAGACGTATCTTCCAGATACACACATCAAAGA 1168
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1100 AATTCCCTCTTCCAGATATCAAAACAAGAAGACGTATCTTCCAGATACACACATCAAAGA 1159
Query 1169 TGACTTTGGCCGAAGATGTGAACTTAGAAGAGTTTGTAATGACGAAAGACGAGTTCTCAG 1228
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1160 TGACTTTGGCTGAAGATGTGAACTTAGAAGAGTTTGTAATGACAAAAGACGAGTTCTCAG 1219
Query 1229 GAGCTGATATAAAGGCGATATGTACAGAAGCTGGTCTGCTTGCTCTTAGAGAGCGTCGAA 1288
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1220 GAGCTGATATAAAGGCAATATGCACAGAAGCTGGTCTGCTTGCTCTTAGAGAGCGTCGGA 1279
Query 1289 TGAAAGTGACGCATGTGGACTTCAAGAAGGCGAAGGAGAAGGTTATGTTCAAGAAGAAAG 1348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 TGAAAGTGACGCATGTGGACTTCAAGAAGGCGAAGGAGAAGGTTATGTTCAAGAAGAAAG 1339
Query 1349 AAGGAGTCCCTGAAGGTCTTTACATGTGAAAGAAGCACAAACGACTA-TTTCAAtctctt 1407
||||||| |||||||||||||||||||||| || |||||| ||||| ||||||||||||
Sbjct 1340 AAGGAGTTCCTGAAGGTCTTTACATGTGAATGATGCACAA-CGACTGGTTTCAATCTCTT 1398
Query 1408 ttt-cgagtttgctctctttttctc--tttttctG 1439
||| ||||||||||||||||||||| ||||||||
Sbjct 1399 TTTTCGAGTTTGCTCTCTTTTTCTCCGTTTTTCTG 1433
> AT4G29040.1 | Symbols: RPT2a | regulatory particle AAA-ATPase
2A | chr4:14312303-14314600 FORWARD LENGTH=1612
Length=1612
Score = 1748 bits (946), Expect = 0.0
Identities = 1225/1361 (90%), Gaps = 13/1361 (1%)
Strand=Plus/Plus
Query 24 gagagagagagaCGAAGCAAAAATGGGTCAAGGACCATCCGGCGGATTGAATCGGCAAGG 83
|||||| ||||| |||| || ||||| ||||||||||| || |||||||||||||||||
Sbjct 48 GAGAGA-AGAGA-GAAG-AATCATGGGACAAGGACCATCGGGAGGATTGAATCGGCAAGG 104
Query 84 AGATCGGAAACCAGATGGTGGTGACAAGAAAGAGAAGAAGTTCGAACCAGCCGCACCACC 143
|||||||||||| |||||||| || ||||||||||||||||| || || || ||||||||
Sbjct 105 AGATCGGAAACCTGATGGTGGAGATAAGAAAGAGAAGAAGTTTGAGCCGGCGGCACCACC 164
Query 144 TGCTCGTGTAGGGAGGAAGCAACGGAAGCAAAAAGGACCTGAAGCGGCGGCGAGA-TTGC 202
||||||||||||||||||||| ||||||| ||||| || || |||||||||||| || |
Sbjct 165 GGCTCGTGTAGGGAGGAAGCAAAGGAAGCAGAAAGGGCCAGAGGCGGCGGCGAGACTT-C 223
Query 203 CGACGGTGACTCCTTCTACTAAATGTAAGCTTCGATTGCTTAAACTGGAGCGAATCAAGG 262
||||||||||||| |||||||| |||||||| || || || ||| |||| || |||||||
Sbjct 224 CGACGGTGACTCCGTCTACTAAGTGTAAGCTCCGGTTACTGAAATTGGAACGGATCAAGG 283
Query 263 ACTATTTGCTT-ATGGAGGAAGAGTTTGTGGCGAATCAGGAGAGATTGAAACCTCAGGAA 321
| |||||| || |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 284 ATTATTTG-TTGATGGAGGAAGAGTTTGTGGCGAATCAAGAGAGGTTGAAACCTCAGGAA 342
Query 322 GAGAAAGCTGAGGAAGATAGATCTAAAGTTGATGATCTTCGTGGTACACCTATGAGTGTT 381
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 343 GAGAAAGCTGAGGAAGATAGATCTAAGGTTGATGATCTTCGTGGTACACCTATGAGTGTT 402
Query 382 GGCAATCTT-GAAGAGCTT-ATTGATGAGAATCACGCCATTGTTTCTTCTTCTGTTGGTC 439
|| ||| || |||||| || ||||||||||||||||| |||||||||||||||||||| |
Sbjct 403 GGGAAT-TTGGAAGAG-TTGATTGATGAGAATCACGCTATTGTTTCTTCTTCTGTTGGAC 460
Query 440 CTGAGTATTACGTTGGGATTTTGTCTTTCGTTGATAAGGATCAGCTTGAACCTGGTTGCT 499
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| || |
Sbjct 461 CTGAGTACTACGTTGGGATTTTGTCCTTCGTTGATAAAGATCAGCTTGAACCTGGATGTT 520
Query 500 CCATTTTGATGCATAACAAGGTACTCTCTGTTGTTGGGATTCTTCAAGATGAAGTGGATC 559
| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 521 CGATTTTGATGCATAATAAGGTTCTCTCTGTTGTTGGGATTCTACAAGATGAAGTGGATC 580
Query 560 CAATGGTGTCTGTGATGAAAGTGGAGAAAGCTCCTTTGGAATCATATGCTGACATTGGAG 619
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 581 CAATGGTGTCTGTGATGAAAGTTGAGAAAGCTCCTTTGGAGTCATATGCTGATATTGGAG 640
Query 620 GTTTAGAAGCTCAGATTCAGGAGATCAAGGAAGCTGTTGAGCTACCTTTAACACATCCCG 679
||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| |
Sbjct 641 GTTTAGAAGCTCAGATTCAGGAGATTAAGGAAGCTGTTGAGCTTCCTTTGACTCATCCTG 700
Query 680 AGTTGTATGAAGATATCGGTATTAAGCCACCAAAAGGTGTGATCTTGTATGGTGAGCCAG 739
|||||||||||||||| |||||||| |||||||| ||||| || |||||||||||||| |
Sbjct 701 AGTTGTATGAAGATATTGGTATTAAACCACCAAAGGGTGTAATTTTGTATGGTGAGCCTG 760
Query 740 GCACTGGGAAGACATTGCTTGCTAAGGCAGTGGCGAATTCTACATCAGCTACTTTCTTGC 799
| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 761 GAACTGGGAAGACATTGCTTGCTAAGGCGGTTGCGAATTCAACATCAGCTACTTTCTTGA 820
Query 800 GTGTTGTCGGTAGTGAACTGATTCAGAAGTATTTGGGAGATGGTCCCAAGCTTGTGAGGG 859
| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 821 GAGTTGTTGGTAGTGAGCTGATTCAGAAGTATTTGGGAGATGGTCCTAAGCTTGTGAGAG 880
Query 860 AGCTTTTCAGGGTTGCCGATGACCTTTCACCATCTATTGTTTTCATAGACGAGATTGATG 919
| |||||||| ||||| ||||||||||||||||| || || |||||||| ||||||||||
Sbjct 881 AACTTTTCAGAGTTGCTGATGACCTTTCACCATCAATCGTCTTCATAGATGAGATTGATG 940
Query 920 CTGTTGGCACCAAGCGGTATGACGCAAACTCAGGTGGTGAACGTGAAATCCAAAGAACCA 979
||||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||| |
Sbjct 941 CTGTTGGTACCAAGCGGTATGACGCTCACTCAGGAGGTGAACGTGAGATCCAAAGAACTA 1000
Query 980 TGTTGGAACTACTGAACCAGCTTGATGGATTTGATTCAAGAGGAGATGTTAAGGTAATTC 1039
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1001 TGTTGGAACTTCTGAACCAGCTTGATGGATTTGATTCAAGAGGAGATGTTAAGGTCATCC 1060
Query 1040 TCGCGACAAACAGAATCGAAAGTCTTGACCCGGCACTTCTTAGACCAGGCCGGATCGACA 1099
| || |||||||||||||| ||||||||||| ||||| ||| |||| || ||||| || |
Sbjct 1061 TTGCAACAAACAGAATCGAGAGTCTTGACCCAGCACTGCTTCGACCTGGACGGATTGATA 1120
Query 1100 GGAAAATCGAGTTCCCTCTTCCAGATATCAAAACAAGGAGACGTATCTTCCAGATACACA 1159
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1121 GGAAAATCGAGTTCCCTCTCCCAGATATCAAAACAAGAAGACGTATCTTCCAGATACACA 1180
Query 1160 CATCAAAGATGACTTTGGCCGAAGATGTGAACTTAGAAGAGTTTGTAATGACGAAAGACG 1219
|||| ||||||||| | | |||||||| ||| | ||||||||||| |||||||||||||
Sbjct 1181 CATCGAAGATGACTCTCTCGGAAGATGTAAACCTCGAAGAGTTTGTGATGACGAAAGACG 1240
Query 1220 AGTTCTCAGGAGCTGATATAAAGGCGATATGTACAGAAGCTGGTCTGCTTGCTCTTAGAG 1279
||||||||||||||||||||||||| ||||| || || |||||||| || ||||| || |
Sbjct 1241 AGTTCTCAGGAGCTGATATAAAGGCTATATGCACTGAGGCTGGTCTACTAGCTCTCAGGG 1300
Query 1280 AGCGTCGAATGAAAGTGACGCATG-TGGACTTCAAGAAGGCGAAGGAGAAGGTTATGTTC 1338
||||||| ||||| ||||| ||| || | |||||||| || ||||||||||||||||||
Sbjct 1301 AGCGTCGTATGAAGGTGACACATCCTG-ATTTCAAGAAAGCAAAGGAGAAGGTTATGTTC 1359
Query 1339 AAGAAGAAAGAAGGAGTCCCTGAAGGTCTTTACATGTGAAA 1379
|||||||||||||| ||||||||||| || ||||||| |||
Sbjct 1360 AAGAAGAAAGAAGGCGTCCCTGAAGGCCTCTACATGTAAAA 1400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77660243115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5