BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480456
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20120.1 | Symbols: COV1 | Protein of unknown function (DUF5... 1677 0.0
AT2G20130.1 | Symbols: LCV1 | like COV 1 | chr2:8690368-8692420... 1251 0.0
> AT2G20120.1 | Symbols: COV1 | Protein of unknown function (DUF502)
| chr2:8687354-8689476 REVERSE LENGTH=1176
Length=1176
Score = 1677 bits (908), Expect = 0.0
Identities = 1079/1156 (93%), Gaps = 33/1156 (3%)
Strand=Plus/Plus
Query 1 TCAAGTTGGAGTTAGCTAGCTAGCTT-GCTTTATGCACAGAAGAACAGTCGCCGGCAAAA 59
|||||||||||||||||| ||||| || || || | ||||||||||||||||||||
Sbjct 5 TCAAGTTGGAGTTAGCTA---AGCTTAGC--TA--CA-A-AAGAACAGTCGCCGGCAAAA 55
Query 60 GTCTCAACCTTTTTCCTCTCCGCCGTTCACA-TTCACCTGCATTTCTCCCTTCTTTCTTC 118
|||||| |||||||||||||||||||||||| |||||| ||||||||| ||||||||||
Sbjct 56 GTCTCAGCCTTTTTCCTCTCCGCCGTTCACAGTTCACCGGCATTTCTCTCTTCTTTCTTT 115
Query 119 TTCTCCGGCTAGATTTCATTGTCGC-CTGAGTTTCTCGGCGATGGGAGACGAGAAGCCGG 177
||||||| ||||||||| ||||| | || |||||| |||||||||||||||||||||||
Sbjct 116 TTCTCCGACTAGATTTCCTTGTCTCTTTG-GTTTCTTGGCGATGGGAGACGAGAAGCCGG 174
Query 178 CGATTGTGATGGCCAATCGTGAAAGAGATCGAGAGCTTCTGATTCCCGTCGCTGATTCCG 237
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TGATTGTTATGGCCAATCGAGAAAGAGATCGAGAGCTTCTGATTCCCGTCGCTGATTCCG 234
Query 238 GCGACAAAGACGATGGTCcttcttcaaagccttcttcttctt-ct-t-c--c-tcttctt 291
||||||||||||| ||| ||||||| |||||||||||||||| || | | | |||||||
Sbjct 235 GCGACAAAGACGACGGTTCTTCTTCGAAGCCTTCTTCTTCTTCCTCTGCTTCTTCTTCTT 294
Query 292 cGCATCAATCCAGCCACGAGACTTTTAGCTTGTTCATTAGGGGTTGGGCGTCAAAGAAGT 351
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 295 CGCATCAATCCAGCCACGAGACTTTAAGCTTGTTCATTAGGGGCTGGGCGTCAAAGAAGT 354
Query 352 TCATGACAGGCTGTGTTATCCTACTTCCTATTGCAATTACTTTCTATATAACATGGTGGT 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TCATGACAGGCTGTGTTATCCTACTTCCTATTGCAATTACTTTCTATATAACATGGTGGT 414
Query 412 TTATTCACTTTGTTGATGGATTCTTCTCTCCAATATATGCACAACTTGGAATCAACGTAT 471
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TTATTCACTTTGTCGATGGATTCTTCTCTCCAATATATGCACAACTTGGAATCAACGTAT 474
Query 472 TTGGTTTCGGTTTTTTGACTTCCATTGCATTCATCTTCTTGGTCGGGGTGTTCATGTCTT 531
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 475 TTGGTTTCGGTTTTTTGACTTCCATTGCATTCATCTTCTTGGTTGGGGTGTTCATGTCTT 534
Query 532 CGTGGTTGGGGGCATCGGTTCTGAACTTGGGAGAGTGGTTTATCAAGCGGATGCCATTTG 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 535 CGTGGTTGGGGGCATCGGTTCTGAACTTGGGAGAGTGGTTTATCAAGCGGATGCCGTTTG 594
Query 592 TTCGTCACATCTACAACGCCTCCAAGCAAATCAGCACGGCCATATCGCCTGATCAAAATA 651
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 595 TTCGTCACATCTACAACGCCTCCAAGCAAATCAGCACTGCCATATCGCCTGATCAAAATA 654
Query 652 CACAAGCATTCAAGGAAGTTGCAATCATCAGGCATCCCCGTGTAGGTGAATACGCATTTG 711
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CACAAGCTTTCAAGGAAGTTGCAATCATCAGGCATCCCCGTGTAGGTGAATACGCATTTG 714
Query 712 GCTTCATTACATCAACTGTTGTTCTCCAGAACTACCCAACCGAGGAGGAACTTTGCTGTG 771
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 715 GCTTCATTACATCAACTGTTGTTCTCCAGAACTATCCAACCGAGGAGGAACTTTGCTGTG 774
Query 772 TATACGTTCCCACGAACCACCTTTACATTGGAGATATACTACTTGTCAACAGTAATGACG 831
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 775 TATACGTTCCCACGAACCACCTTTACATTGGAGATCTACTACTTGTCAACAGTAATGACG 834
Query 832 TTATCAGGCCAAATCTCTCTGTCCGGGAAGGAATAGAGATTGTTGTCTCGGGTGGAATGT 891
||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 835 TTATCAGGCCAAACCTCTCGGTCCGGGAAGGAATTGAGATTGTTGTTTCGGGTGGAATGT 894
Query 892 CAATGCCGCAGATTCTATCAACTCTTGATAAACCTTCGTCCTCGATTGATAGAGCTACAA 951
||||||| |||||||| || ||| |||||||||||| | |||||||||||||||||||||
Sbjct 895 CAATGCCACAGATTCTGTCCACTGTTGATAAACCTTTGGCCTCGATTGATAGAGCTACAA 954
Query 952 GCTTATAGTTTCAACCAGAAGA-TTA-TCTTTTTGTTAGGATTTGTTGATGAGTGTGTGT 1009
||||||||||| || ||||||| || |||||||||| |||||||||||||||||| |||
Sbjct 955 GCTTATAGTTTAAAGCAGAAGAATTTCTCTTTTTGTTGGGATTTGTTGATGAGTGTTTGT 1014
Query 1010 CTGTCTCTGGAGTCTCTTCAATATTGTTGTAATATTTCATTTGTGTTCACAAAAGTGTAT 1069
||||||||||||||||||||||||||||||||||||||| ||| || |||| ||||||
Sbjct 1015 GTGTCTCTGGAGTCTCTTCAATATTGTTGTAATATTTCATGTGT-TT-ACAA--GTGTAT 1070
Query 1070 AATGTAAGATAGGTCTCTCTCT---TCT-T----AGATATGAATCTTTCTCCTGAAAATA 1121
|||||||| ||||||||||||| ||| | |||||||||||||| |||||||||||
Sbjct 1071 AATGTAAGGTAGGTCTCTCTCTCCCTCTCTTCTTAGATATGAATCTTTTTCCTGAAAATA 1130
Query 1122 TTATTTTTCTTGAAAA 1137
||||| ||||||||||
Sbjct 1131 TTATTCTTCTTGAAAA 1146
> AT2G20130.1 | Symbols: LCV1 | like COV 1 | chr2:8690368-8692420
REVERSE LENGTH=1203
Length=1203
Score = 1251 bits (677), Expect = 0.0
Identities = 736/764 (96%), Gaps = 5/764 (1%)
Strand=Plus/Plus
Query 180 ATTGTGATGGCCAATCGTGAAAGAGATCGAGAGCTTCTGATTCCCGTCGCTGATTCCGGC 239
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 ATTGTTATGGCCAATCGAGAAAGAGATCGAGAGCTTCTGATTCCCGTCGCTGATTTCGGC 240
Query 240 GACAAAGACGATGGTCcttcttcaaagccttcttcttctt-ct-t-cctcttcttcGCAT 296
||||||||||||||| ||||||| |||||||||||||||| || | | ||||||||||||
Sbjct 241 GACAAAGACGATGGTTCTTCTTCGAAGCCTTCTTCTTCTTCCTCTGCTTCTTCTTCGCAT 300
Query 297 CAATCCAGCCACGAGACTTTTAGCTTGTTCATTAGGGGTTGGGCGTCAAAGAAGTTCATG 356
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAATCCGGCCACGAGACTTTAAGCTTGTTCATTAGGGGTTGGGCGTCAAAGAAGTTCATG 360
Query 357 ACAGGCTGTGTTATCCTACTTCCTATTGCAATTACTTTCTATATAACATGGTGGTTTATT 416
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 361 ACAGGCTGTGTTATCCTACTTCCTATTGCAGTTACTTTCTATACAACATGGTGGTTTATT 420
Query 417 CACTTTGTTGATGGATTCTTCTCTCCAATATATGCACAACTTGGAATCAACGTATTTGGT 476
|||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 421 CACTTTGTCGATGGATTCTTCTCTCCAATATATGCACTACTTGGAATCAACATATTTGGT 480
Query 477 TTCGGTTTTTTGACTTCCATTGCATTCATCTTCTTGGTCGGGGTGTTCATGTCTTCGTGG 536
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 TTCGGTTTTTTGACTTCCATTGCATTCATCTTCTTGGTTGGGGTGTTCATGTCTTCGTGG 540
Query 537 TTGGGGGCATCGGTTCTGAACTTGGGAGAGTGGTTTATCAAGCGGATGCCATTTGTTCGT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTGGGGGCATCGGTTCTGAACTTGGGAGAGTGGTTTATCAAGCGGATGCCATTTGTTCGT 600
Query 597 CACATCTACAACGCCTCCAAGCAAATCAGCACGGCCATATCGCCTGATCAAAATACACAA 656
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 CACATCTACAACGCCTCCAAGCAAATCAGCACTGCCATATCGCCTGATCAAAATACACAA 660
Query 657 GCATTCAAGGAAGTTGCAATCATCAGGCATCCCCGTGTAGGTGAATACGCATTTGGCTTC 716
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 GCTTTCAAGGAAGTTGCAATCATCAGGCATCCCCGTGTAGGTGAATATGCATTTGGCTTC 720
Query 717 ATTACATCAACTGTTGTTCTCCAGAACTACCCAACCGAGGAGGAACTTTGCTGTGTATAC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATTACATCAACTGTTGTTCTCCAGAACTACCCAACCGAGGAGGAACTTTGCTGTGTATAC 780
Query 777 GTTCCCACGAACCACCTTTACATTGGAGATATACTACTTGTCAACAGTAATGACGTTATC 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTTCCCACGAACCACCTTTACATTGGAGATATACTACTTGTCAACAGTAATGACGTTATC 840
Query 837 AGGCCAAATCTCTCTGTCCGGGAAGGAATAGAGATTGTTGTCTC-GGGTGGAATGTCAAT 895
|||||||| |||||||||||||||||||| ||||||||||| || ||| |||||||||||
Sbjct 841 AGGCCAAACCTCTCTGTCCGGGAAGGAATTGAGATTGTTGTTTCCGGG-GGAATGTCAAT 899
Query 896 GCCGCAGATTCTATCAACTCTTGATAAACCTTCGTCCTCGATTG 939
||||||||||||||| |||||||||||||||| | |||||||||
Sbjct 900 GCCGCAGATTCTATCGACTCTTGATAAACCTTTGGCCTCGATTG 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5