BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480460 Length=1474 Score E Sequences producing significant alignments: (Bits) Value AT2G20100.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2121 0.0 AT4G29100.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 189 7e-47 > AT2G20100.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:8678078-8682086 FORWARD LENGTH=1473 Length=1473 Score = 2121 bits (1148), Expect = 0.0 Identities = 1361/1460 (93%), Gaps = 29/1460 (2%) Strand=Plus/Plus Query 23 AAACTAAAGCATCGAGAAACAACAAATCTCAAAATCTTTTCATATTCT--TTTAGTAGAA 80 ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 35 AAACTAAAGCATCGAGAAACAACAAATCTTAAAATCTTTTCATATTCTCGGTTAGTAGAA 94 Query 81 ACTAAGAGAGGCGATGAATAGAGGAGTGTTGGAGAGTTCGCCGGTTCAACACCTCACGGC 140 |||| || | | ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 95 ACTAGGAAAAGAGATGAATAGAGGAGTGTTGGAGAGTTCGCCGGTTCAACATCTCACGGC 154 Query 141 GGCTGGAAACCCTAATTGGTGGAATAACGTCAGCGGCGGCTTGAGGCCACCACCACCGTT 200 ||||||||||||||||||||||||||| |||||| ||||||||||||||||| | ||||| Sbjct 155 GGCTGGAAACCCTAATTGGTGGAATAATGTCAGCCGCGGCTTGAGGCCACCAACGCCGTT 214 Query 201 TATGAGTCACCAGCCGCCGCCTACAActc-cttatcttccaagtctcttgccgaccttct 259 ||||||||| |||||||| |||| || | ||| | |||||||||||||||| | ||||| Sbjct 215 GATGAGTCACGAGCCGCCGTCTACCAC-CGCTTTTATTCCAAGTCTCTTGCCAAACTTCT 273 Query 260 tctcttctccaacttcctcttcatcttcttcttcaccttctttgcctcttcctaatagta 319 |||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||||| Sbjct 274 TCTCTTCTCCGACTTCCTCTTCA---TCTTCTTCACCTTCTTTCCCTCCTCCTAATAGTA 330 Query 320 actctaacttctcttcttGGCTTGAAATGAGTGATCTGCCTCTTGACCAGCCATGGAACC 379 || ||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 331 ACCCTAACTTCTCTTCTTGGCTTGAAATGAGTGATCTGCCTCTTGATCAGCCATGGAGCC 390 Query 380 TTAGTCAACTCCTCTTGGGTGGATTGATGATGGGAGAGGAAGAGAAAATGGAGATGATGA 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 391 TTAGTCAACTCCTCTTGGGTGGATTGATGATGGGAGAGGAAGAGAAAATGGAGATGATGA 450 Query 440 ACcatcatcatcatcatcaAAATCAACCCCATAGTTACCAAGAGAAGAAGATACAGAATT 499 | | |||||||||||||||||||||| ||| |||||||||| ||||| |||||| |||| Sbjct 451 A-C--CATCATCATCATCAAAATCAACACCAAAGTTACCAAGCGAAGAGGATACAAAATT 507 Query 500 GGGAAGAACAAGTTTTGAGGCACCAAGCTTCCATGAAACAAGAGAGTAACAATACTAATG 559 |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 508 GGGAAGAACAAGTTTTGAGGCACCAAGCTTCCATGAAACAAGAGAGTAGTAATAATAATA 567 Query 560 GTTATAGAATAATGTCCTCACCAAACTCACCTCCAAACAAGTCTTGTGTTACAATTCA-C 618 ||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| | | Sbjct 568 GTTATGGAATAATGTCCTCACCAAACTCACCTCCAAACAAATCTTGTGCTACAATT-ATC 626 Query 619 AACACCAATGAAGAAAACAACAATAACATTCACAATGGTCCTAACTTGTCCGAGTGTAAT 678 |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 627 AACACCAATGAAGACAACAACAATAACATTCACAGTGGTCTTAACTTGTCCGAGTGTAAT 686 Query 679 AGCTCAGAGATTATTGGGTCTTCTTTTGCAAATAAGAAACCAAAACTTCAAGTTCCTTCA 738 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 687 AGCTCAGAGATGATTGGGTCTTCTTTTGCTAATAAGAAACCAAAACTTCAAGTTCCTTCA 746 Query 739 TCACAATCGACTCTCAAGGTGAGAAAGGAGAAACTTGGAGGCAGAATTGCATCTCTTCAC 798 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 747 TCACAATCAACTCTCAAGGTGAGAAAGGAGAAACTTGGAGGCAGAATAGCATCTCTTCAC 806 Query 799 CAGCTAGTATCTCCCTTTGGCAAGACTGACACAGCCTCTGTCTTGTCGGAGGCTATTGGA 858 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 807 CAGCTAGTATCTCCCTTTGGCAAGACTGACACAGCCTCTGTCTTGTCGGAGGCTATTGGA 866 Query 859 TACATTAGATTCCTCCACAGTCAAATTGAGGCTTTAAGTCTACCATACTTTGCTACTCCC 918 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 867 TACATTAGATTCCTCCACAGTCAAATTGAGGCTTTAAGTCTACCATACTTTGGTACTCCC 926 Query 919 TCGAGGAATAATATGATGCACCACCAACATGCACAAGGAAATATGAACGGTATATTTCCT 978 |||||||| |||||||||||||| | ||||||||| |||||||||| |||||||||||| Sbjct 927 TCGAGGAACAATATGATGCACCA--A-CATGCACAAAGAAATATGAATGGTATATTTCCT 983 Query 979 GAGGACCCTGGTCAGCTTGTGAATGAGTATTGCATGAAAAGAGGAGTTTCATTGTCATCG 1038 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 984 GAGGACCCTGGTCAGCTTGTGAATGAGTATTGCATGAAAAGAGGAGTTTCATTGTCATCG 1043 Query 1039 ACGGACGATCAAAAATCAAATCCTAACGAAGAACCGATGAAAGACTTAAGAAGTAG-GGG 1097 |||||| ||||||||||||||||||||||||||||||||||||| || |||||||| ||| Sbjct 1044 ACGGACAATCAAAAATCAAATCCTAACGAAGAACCGATGAAAGATTTGAGAAGTAGAGGG 1103 Query 1098 ACTTTGTCTTGTTCCAATCTCATGCACACTCCAAGTTGGCAGCGACAATGGCGCCGACTA 1157 |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1104 -CTTTGTCTTGTTCCCATCTCATGCACACTACAAGTTGGCAGCGACAATGGTGCCGACTA 1162 Query 1158 TTGGGCTCCGGCGTTCGGATTCACTCTCCAGTGAACTATTCACTTTCCGTTATTTTATTT 1217 ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 1163 TTGGGCTCCGGCGTTCGGAACCACTCTCCAGTGAACTATTCACTTTCTGTTATTTTATTT 1222 Query 1218 TGGGTCAGCCaaaaaaaT-TAGTAGATGTTATAACATCATGAGCAACCAATCTATTGAGA 1276 | ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 1223 TTGGTCAGCCAAAAAAAAATAGTAGATGTTATAACATCATGAGCAACCAATCAATTGAGA 1282 Query 1277 AAACAACAAAATGAGTTTCCAAATTTGATTGCTCATGATGCTGTACCAACACATATTGGT 1336 ||||| |||||||||||||||||||||||||||||||||||| ||| || || |||||| Sbjct 1283 AAACATCAAAATGAGTTTCCAAATTTGATTGCTCATGATGCTATACTAAAACCGATTGGT 1342 Query 1337 TTTGGCGTTTGGCCTTTGAACATTTTCTGTTGACGAGTATGAGATGG-TATGTTGAATCA 1395 ||||||||||||||||||| ||||||| ||||||||||||||||||| | |||||||||| Sbjct 1343 TTTGGCGTTTGGCCTTTGAGCATTTTCAGTTGACGAGTATGAGATGGCT-TGTTGAATCA 1401 Query 1396 TGTTTT-CTTGCTTTAATAGGAAACTTTATTAATTCTCTTAAATGTATATGTGATATGAT 1454 |||||| ||| |||||||||||||||||||| |||||||||| ||||||||| | | Sbjct 1402 TGTTTTTCTTACTTTAATAGGAAACTTTATTTATTCTCTTAA-TGTATATGT--T--G-- 1454 Query 1455 GCTTCTATTTTAATTTTATT 1474 | |||||||||||||||||| Sbjct 1455 G-TTCTATTTTAATTTTATT 1473 Score = 52.8 bits (28), Expect = 9e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 1 CTTCTTCTTTCCTTTTCTCCAAAAACTA 28 |||||||||||||||||||||||||||| Sbjct 1 CTTCTTCTTTCCTTTTCTCCAAAAACTA 28 > AT4G29100.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:14341000-14344930 FORWARD LENGTH=1719 Length=1719 Score = 189 bits (102), Expect = 7e-47 Identities = 221/274 (81%), Gaps = 25/274 (9%) Strand=Plus/Plus Query 272 cttcctcttcatcttcttcttcaccttctttgcctcttcctaatagtaactctaact-tc 330 |||| ||||| |||||||||||||| |||||| ||| | | |||| |||| | || Sbjct 358 CTTCTTCTTCCTCTTCTTCTTCACCGTCTTTG------CCT-A-A-TAACCCTAA-TCTC 407 Query 331 tcttcttGGCTTGAAATG-AGTGATCTGCCTCTTGACCAGCCATGGAACCTTAGTCAACT 389 |||||||||||||||| | | |||||| |||| || || | |||| |||||| ||||| Sbjct 408 TCTTCTTGGCTTGAAA-GCAATGATCTCCCTCCTG---AGTCTTGGAGCCTTAGCCAACT 463 Query 390 CCTCTTGGGTGGATTGATGATGGGAGAGGAAGAGAAAATGGAGATGATGAACcatcatca 449 || ||||||||||||||||||||||||||||||| | |||||||||||||||||||| | Sbjct 464 TCTTTTGGGTGGATTGATGATGGGAGAGGAAGAGAGATTGGAGATGATGAACCATCATAA 523 Query 450 tcatcatca--AA-ATCAACCCCATAGTTACCAAGAGAAGA-A-GATAC-AGAATTGGGA 503 ||||||| | || | |||| |||| ||| |||| ||||| | ||| |||||||||| Sbjct 524 TCATCATGATGAACAACAACACCATGGTTTTCAAGGGAAGATAAGATTGGAGAATTGGGA 583 Query 504 AGAACAAGTTTTGAGGCACCAA---GCTTCCATG 534 ||||||||| || || |||||| ||||||||| Sbjct 584 AGAACAAGTGTTAAGCCACCAACAAGCTTCCATG 617 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72690389160 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5