BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480460
Length=1474
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20100.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2121 0.0
AT4G29100.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 189 7e-47
> AT2G20100.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:8678078-8682086 FORWARD LENGTH=1473
Length=1473
Score = 2121 bits (1148), Expect = 0.0
Identities = 1361/1460 (93%), Gaps = 29/1460 (2%)
Strand=Plus/Plus
Query 23 AAACTAAAGCATCGAGAAACAACAAATCTCAAAATCTTTTCATATTCT--TTTAGTAGAA 80
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 35 AAACTAAAGCATCGAGAAACAACAAATCTTAAAATCTTTTCATATTCTCGGTTAGTAGAA 94
Query 81 ACTAAGAGAGGCGATGAATAGAGGAGTGTTGGAGAGTTCGCCGGTTCAACACCTCACGGC 140
|||| || | | ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 95 ACTAGGAAAAGAGATGAATAGAGGAGTGTTGGAGAGTTCGCCGGTTCAACATCTCACGGC 154
Query 141 GGCTGGAAACCCTAATTGGTGGAATAACGTCAGCGGCGGCTTGAGGCCACCACCACCGTT 200
||||||||||||||||||||||||||| |||||| ||||||||||||||||| | |||||
Sbjct 155 GGCTGGAAACCCTAATTGGTGGAATAATGTCAGCCGCGGCTTGAGGCCACCAACGCCGTT 214
Query 201 TATGAGTCACCAGCCGCCGCCTACAActc-cttatcttccaagtctcttgccgaccttct 259
||||||||| |||||||| |||| || | ||| | |||||||||||||||| | |||||
Sbjct 215 GATGAGTCACGAGCCGCCGTCTACCAC-CGCTTTTATTCCAAGTCTCTTGCCAAACTTCT 273
Query 260 tctcttctccaacttcctcttcatcttcttcttcaccttctttgcctcttcctaatagta 319
|||||||||| |||||||||||| ||||||||||||||||| |||| |||||||||||
Sbjct 274 TCTCTTCTCCGACTTCCTCTTCA---TCTTCTTCACCTTCTTTCCCTCCTCCTAATAGTA 330
Query 320 actctaacttctcttcttGGCTTGAAATGAGTGATCTGCCTCTTGACCAGCCATGGAACC 379
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 331 ACCCTAACTTCTCTTCTTGGCTTGAAATGAGTGATCTGCCTCTTGATCAGCCATGGAGCC 390
Query 380 TTAGTCAACTCCTCTTGGGTGGATTGATGATGGGAGAGGAAGAGAAAATGGAGATGATGA 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 TTAGTCAACTCCTCTTGGGTGGATTGATGATGGGAGAGGAAGAGAAAATGGAGATGATGA 450
Query 440 ACcatcatcatcatcatcaAAATCAACCCCATAGTTACCAAGAGAAGAAGATACAGAATT 499
| | |||||||||||||||||||||| ||| |||||||||| ||||| |||||| ||||
Sbjct 451 A-C--CATCATCATCATCAAAATCAACACCAAAGTTACCAAGCGAAGAGGATACAAAATT 507
Query 500 GGGAAGAACAAGTTTTGAGGCACCAAGCTTCCATGAAACAAGAGAGTAACAATACTAATG 559
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 508 GGGAAGAACAAGTTTTGAGGCACCAAGCTTCCATGAAACAAGAGAGTAGTAATAATAATA 567
Query 560 GTTATAGAATAATGTCCTCACCAAACTCACCTCCAAACAAGTCTTGTGTTACAATTCA-C 618
||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| | |
Sbjct 568 GTTATGGAATAATGTCCTCACCAAACTCACCTCCAAACAAATCTTGTGCTACAATT-ATC 626
Query 619 AACACCAATGAAGAAAACAACAATAACATTCACAATGGTCCTAACTTGTCCGAGTGTAAT 678
|||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 627 AACACCAATGAAGACAACAACAATAACATTCACAGTGGTCTTAACTTGTCCGAGTGTAAT 686
Query 679 AGCTCAGAGATTATTGGGTCTTCTTTTGCAAATAAGAAACCAAAACTTCAAGTTCCTTCA 738
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 687 AGCTCAGAGATGATTGGGTCTTCTTTTGCTAATAAGAAACCAAAACTTCAAGTTCCTTCA 746
Query 739 TCACAATCGACTCTCAAGGTGAGAAAGGAGAAACTTGGAGGCAGAATTGCATCTCTTCAC 798
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 747 TCACAATCAACTCTCAAGGTGAGAAAGGAGAAACTTGGAGGCAGAATAGCATCTCTTCAC 806
Query 799 CAGCTAGTATCTCCCTTTGGCAAGACTGACACAGCCTCTGTCTTGTCGGAGGCTATTGGA 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 CAGCTAGTATCTCCCTTTGGCAAGACTGACACAGCCTCTGTCTTGTCGGAGGCTATTGGA 866
Query 859 TACATTAGATTCCTCCACAGTCAAATTGAGGCTTTAAGTCTACCATACTTTGCTACTCCC 918
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 867 TACATTAGATTCCTCCACAGTCAAATTGAGGCTTTAAGTCTACCATACTTTGGTACTCCC 926
Query 919 TCGAGGAATAATATGATGCACCACCAACATGCACAAGGAAATATGAACGGTATATTTCCT 978
|||||||| |||||||||||||| | ||||||||| |||||||||| ||||||||||||
Sbjct 927 TCGAGGAACAATATGATGCACCA--A-CATGCACAAAGAAATATGAATGGTATATTTCCT 983
Query 979 GAGGACCCTGGTCAGCTTGTGAATGAGTATTGCATGAAAAGAGGAGTTTCATTGTCATCG 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 GAGGACCCTGGTCAGCTTGTGAATGAGTATTGCATGAAAAGAGGAGTTTCATTGTCATCG 1043
Query 1039 ACGGACGATCAAAAATCAAATCCTAACGAAGAACCGATGAAAGACTTAAGAAGTAG-GGG 1097
|||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 1044 ACGGACAATCAAAAATCAAATCCTAACGAAGAACCGATGAAAGATTTGAGAAGTAGAGGG 1103
Query 1098 ACTTTGTCTTGTTCCAATCTCATGCACACTCCAAGTTGGCAGCGACAATGGCGCCGACTA 1157
|||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1104 -CTTTGTCTTGTTCCCATCTCATGCACACTACAAGTTGGCAGCGACAATGGTGCCGACTA 1162
Query 1158 TTGGGCTCCGGCGTTCGGATTCACTCTCCAGTGAACTATTCACTTTCCGTTATTTTATTT 1217
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1163 TTGGGCTCCGGCGTTCGGAACCACTCTCCAGTGAACTATTCACTTTCTGTTATTTTATTT 1222
Query 1218 TGGGTCAGCCaaaaaaaT-TAGTAGATGTTATAACATCATGAGCAACCAATCTATTGAGA 1276
| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1223 TTGGTCAGCCAAAAAAAAATAGTAGATGTTATAACATCATGAGCAACCAATCAATTGAGA 1282
Query 1277 AAACAACAAAATGAGTTTCCAAATTTGATTGCTCATGATGCTGTACCAACACATATTGGT 1336
||||| |||||||||||||||||||||||||||||||||||| ||| || || ||||||
Sbjct 1283 AAACATCAAAATGAGTTTCCAAATTTGATTGCTCATGATGCTATACTAAAACCGATTGGT 1342
Query 1337 TTTGGCGTTTGGCCTTTGAACATTTTCTGTTGACGAGTATGAGATGG-TATGTTGAATCA 1395
||||||||||||||||||| ||||||| ||||||||||||||||||| | ||||||||||
Sbjct 1343 TTTGGCGTTTGGCCTTTGAGCATTTTCAGTTGACGAGTATGAGATGGCT-TGTTGAATCA 1401
Query 1396 TGTTTT-CTTGCTTTAATAGGAAACTTTATTAATTCTCTTAAATGTATATGTGATATGAT 1454
|||||| ||| |||||||||||||||||||| |||||||||| ||||||||| | |
Sbjct 1402 TGTTTTTCTTACTTTAATAGGAAACTTTATTTATTCTCTTAA-TGTATATGT--T--G-- 1454
Query 1455 GCTTCTATTTTAATTTTATT 1474
| ||||||||||||||||||
Sbjct 1455 G-TTCTATTTTAATTTTATT 1473
Score = 52.8 bits (28), Expect = 9e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 CTTCTTCTTTCCTTTTCTCCAAAAACTA 28
||||||||||||||||||||||||||||
Sbjct 1 CTTCTTCTTTCCTTTTCTCCAAAAACTA 28
> AT4G29100.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14341000-14344930 FORWARD
LENGTH=1719
Length=1719
Score = 189 bits (102), Expect = 7e-47
Identities = 221/274 (81%), Gaps = 25/274 (9%)
Strand=Plus/Plus
Query 272 cttcctcttcatcttcttcttcaccttctttgcctcttcctaatagtaactctaact-tc 330
|||| ||||| |||||||||||||| |||||| ||| | | |||| |||| | ||
Sbjct 358 CTTCTTCTTCCTCTTCTTCTTCACCGTCTTTG------CCT-A-A-TAACCCTAA-TCTC 407
Query 331 tcttcttGGCTTGAAATG-AGTGATCTGCCTCTTGACCAGCCATGGAACCTTAGTCAACT 389
|||||||||||||||| | | |||||| |||| || || | |||| |||||| |||||
Sbjct 408 TCTTCTTGGCTTGAAA-GCAATGATCTCCCTCCTG---AGTCTTGGAGCCTTAGCCAACT 463
Query 390 CCTCTTGGGTGGATTGATGATGGGAGAGGAAGAGAAAATGGAGATGATGAACcatcatca 449
|| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct 464 TCTTTTGGGTGGATTGATGATGGGAGAGGAAGAGAGATTGGAGATGATGAACCATCATAA 523
Query 450 tcatcatca--AA-ATCAACCCCATAGTTACCAAGAGAAGA-A-GATAC-AGAATTGGGA 503
||||||| | || | |||| |||| ||| |||| ||||| | ||| ||||||||||
Sbjct 524 TCATCATGATGAACAACAACACCATGGTTTTCAAGGGAAGATAAGATTGGAGAATTGGGA 583
Query 504 AGAACAAGTTTTGAGGCACCAA---GCTTCCATG 534
||||||||| || || |||||| |||||||||
Sbjct 584 AGAACAAGTGTTAAGCCACCAACAAGCTTCCATG 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72690389160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5