BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480462
Length=943
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20080.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1110 0.0
> AT2G20080.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G28840.1); Has 35333
Blast hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr2:8662941-8665026 REVERSE LENGTH=1002
Length=1002
Score = 1110 bits (601), Expect = 0.0
Identities = 809/902 (90%), Gaps = 43/902 (5%)
Strand=Plus/Plus
Query 1 GGCGTATCTATTGAAATCTGGACACAATCTGATCCAGCGATGCAGTAGTTAT--ACTAAG 58
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1 GGCGTATCTATTGAAATCTGGAAACAATCTGATCCAGCGATGCAGTAGTTATACACTAAG 60
Query 59 Gtttt-t-t--ttA-T--aaa--aa--ct----aa-a--a-aaaaaaGAGATCACCAATT 99
||||| | | | | ||| || | || | | |||||||||||||||||||
Sbjct 61 GTTTTCTATAAAAACTCAAAATGAATTGTAAAAAAGATTATAAAAAAGAGATCACCAATT 120
Query 100 CACCATGAAAGAGATCTCT--AATTTCTTAGCTCAAAGCAAAATAATAAAA---A--TCA 152
||||||||||||||||||| ||||||||||||||||||||||||| |||| | ||
Sbjct 121 CACCATGAAAGAGATCTCTCCAATTTCTTAGCTCAAAGCAAAATAAGAAAATTCATTTCT 180
Query 153 TAtctctctctccctctctttctgtctagagaagactttctctctctag-ttctTGCCGG 211
| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 181 TCTCTCTCTCTCCCTCTCTTTCTCTCTAGAGAAGACTTTCTCTCTCTAGTTTCTTG--AA 238
Query 212 TATACC-TTA-AAATTACAAGATCGCAAGTGAAAA-TTAAAGCCGAGCAAAGAAACATGG 268
| | || || | |||| |||||||||| |||| |||| ||||| |||||||||||||
Sbjct 239 TTTTCCGGTATACCTTAC--GATCGCAAGT-AAAATTTAAGGCCGATCAAAGAAACATGG 295
Query 269 GAAGTAGTTTCTTTGGTAGACCAAACATGG-GAGGATCTTCGCCGTCC-TCATCATCTCC 326
|||||| ||||||||||||||||||| ||| | |||||||||||| || ||||| |||||
Sbjct 296 GAAGTACTTTCTTTGGTAGACCAAACGTGGTG-GGATCTTCGCCG-CCTTCATCGTCTCC 353
Query 327 GACGTCTTCCTCTTCTTCTCCGGCGACAAGAAGAGGGAAGAAGAATGGGTCCGATAAGCC 386
|||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 354 GACGTCATCCTCTTCTTCTCCAGCGACAAGAAGAGGGAAGAAGAATGGCTCCGAGAAGCC 413
Query 387 GAAGCAGCCACAAAGAGGTCTCGGAGTAGCACAATTGGAGAAGATTAGGTTACACGGCGA 446
|||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 414 GAAGCAGCCACAGAGAGGTCTTGGAGTAGCACAATTGGAGAAGATTAGATTACATGGCGA 473
Query 447 AATGAGTTGCAATAGCTTCAACAATTATAACCCTTCTTTGTATCCTCAGGAGGATGTCAG 506
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 474 AATGAGTTGCAATAGCTTCAACAGTTATAACCCTTCTTTGTATCCTCAGGAGGATGTGAG 533
Query 507 GATGCAAGGAGGATATTCATCCATACCATCACAATCTTCGTCTCCTTACGGTTTCTATCC 566
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 534 GATGCAAGGAGGATATTCATCCATACCATCACAATCTTCGGCTCCTTATGGTTTCTATCC 593
Query 567 AAACATGATGATGGGAGTACATAGAGATCAATACGAAAGAGCAACCATGAGTTGGAATCC 626
||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 594 AAATATGATGATGGGAGTACATAGAGATCAATACGACAGAGCAACCATGAGCTGGAATCC 653
Query 627 AAGCTACGGCATCTTAGAGAGCCAACATTCTTTGGAACCAAACATCACAAGACATGTCTT 686
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 654 AAGCTACGGCATCTTAGAGAGCCAACATTCTTTGGAACCAAACATCACCAGACATTTCTT 713
Query 687 ACACGAGGTTCTTA-CTCTCTCAACAAGGCGGAGTAAATCTTTGGGATCGGGAAACCAAC 745
| |||||| || | ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 714 AAACGAGGATCCAAGCTCGA-CAACAAGGCGGAGTAAATCTTTGGGATCGGGAATCCAAC 772
Query 746 ACTCGGGATCGAGTGAAAATCAAGAGCTGGACTTGGAATTGAGATTGTCACTTTGATCAT 805
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||
Sbjct 773 ACTCGGGATCGAGTGAAAATCAAGAGGTGGACTTGGAGTTGAGATTGTCACTTTGACCAT 832
Query 806 TACTTTGTAATGGTTTGGTCCTTATGAAATTGAAAAGAAGTCCTATCATTTCAATATTGT 865
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 833 TACTTTGTAATGGTTTGGTCTTTATGAAATTGAAAAGAAGTCGTATCATTTCAATATGGT 892
Query 866 AT 867
||
Sbjct 893 AT 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46114946946
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5