BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480466
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20030.1 | Symbols: | RING/U-box superfamily protein | chr2... 1685 0.0
> AT2G20030.1 | Symbols: | RING/U-box superfamily protein | chr2:8647813-8648985
FORWARD LENGTH=1173
Length=1173
Score = 1685 bits (912), Expect = 0.0
Identities = 1108/1199 (92%), Gaps = 28/1199 (2%)
Strand=Plus/Plus
Query 1 ATGAATTCACCACAAGAAATCTCCAttctcttcttcttcttcttcatcatcatcttcttA 60
||||||||||||||||||||||||| ||| |||||||| | ||||||||||||||
Sbjct 1 ATGAATTCACCACAAGAAATCTCCA-----TTC-TCTTCTTC-T--TCATCATCTTCTTA 51
Query 61 GACTATGTCTCTGCTCAATctcctcctcctcctcctcctGATATATACGCAACAAGCGAC 120
|||||||| ||||||||| | |||||||||||||| || |||||||||||||||||
Sbjct 52 GACTATGTATCTGCTCAA-----T-CTCCTCCTCCTCCTAATCTATACGCAACAAGCGAC 105
Query 121 CTCTTCAAGCCAAGCTTAGCCATCATCACCGGAGTTTTCTCCATCGTCTTCACTCTTACC 180
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 106 CTTTTCAAGCCAAGCTTAGCTATCATCACCGGAGTTTTCTCCATCGTCTTCACTCTCACC 165
Query 181 TTTGTTCTCCTTGTCTACGCCAAATGCTTCCACAACGATCTCCGATCAGAGACTGATGGT 240
||||||||||| |||||||| |||||||||||||| || |||||||||||||| || ||
Sbjct 166 TTTGTTCTCCTCGTCTACGCGAAATGCTTCCACAATGACCTCCGATCAGAGACCGACAGT 225
Query 241 GATGGAGAAACAAGACGACACGATCGTCTCTGGCAAGGACTCTTT-AATCGATCTTCAAG 299
|||||||||| || |||||| |||||||||||||||||||| ||| ||||| ||||||||
Sbjct 226 GATGGAGAAAGAATACGACATGATCGTCTCTGGCAAGGACT-TTTCAATCGGTCTTCAAG 284
Query 300 ATTCTCGGGTCTTGACAAGAAAGCAATTGAATCTCTTCCCTTTTTCAGATTCGCTGCTTT 359
|||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 285 ATTCTCTGGTCTTGACAAGAAAGCAATCGAATCTCTTCCCTTTTTCAGATTCTCTGCTTT 344
Query 360 GAAAGGATTGAAACAAGGGCTTGAATGTTCTGTTTGTTTGTCTAAATTTGAAGATGTTGA 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 345 GAAAGGATTGAAACAAGGGCTTGAATGTTCTGTTTGTTTGTCTAAATTCGAAGATGTTGA 404
Query 420 GATTCTTAGGCTTTTGCCTAAATGCAGACACGCTTTTCATATTGGTTGTATTGACCAGTG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GATTCTTAGGCTTTTGCCTAAATGCAGACACGCTTTTCATATTGGTTGTATTGACCAGTG 464
Query 480 GCTTGAGCAGCACGCTACGTGTCCTTTGTGTAGAAACAGAGTCAATGTTGAAGACGATCT 539
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 465 GCTTGAGCAGCACGCTACGTGTCCTTTGTGTAGAAACAGAGTCAATATTGAAGACGACCT 524
Query 540 CTCTGTTTTGGGTAATAGCAGCAGTAGTCTTAGGATCATGAACCAATCTGAGACAAGAGA 599
|||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 525 CTCTGTGTTGGGTAATAGCAGCACTAGTCTTAGGATCTTGAACCAATCTGAGACAAGAGA 584
Query 600 AGAAGACTCGAGGTTAGAGATATATATCGAACGCGAAGAAGGAACTAGTGACGGGTCTTC 659
||||||||||||||| ||||| || || ||||||||||||||||||| ||||||||| ||
Sbjct 585 AGAAGACTCGAGGTTGGAGATTTACATTGAACGCGAAGAAGGAACTAATGACGGGTCATC 644
Query 660 TAGATTCAGCAGTTTCCGGAAGATTCTAAAGAAATCGTTGTTGCTTGAGCGAGAAGGAAA 719
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AAGATTCAGCAGTTTCCGAAAGATTCTAAAGAAATCGTTGTTGCTTGAGCGAGAAGGAAA 704
Query 720 CGAGAACATCGATGAGAAGAAACTTATGCACAAGTTCAATCACAGGATCGTTGTTTCGGA 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TGAGAACATCGATGAGAAGAAACTTATGCACAAGTTCAATCACAGGATCGTTGTTTCGGA 764
Query 780 TG-TCGTGTTTAAGAACCGTTGGAGTAATGTCACTTCATCTGATTTGACGTTTTTGACAT 838
|| | |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 765 TGCT-GTGTTTAAGAACCGCTGGAGTAATATCACTTCATCTGATTTGACGTTTTTGACAT 823
Query 839 CTGAAATGCTGAATTCGTTGTCAAGCGACAGATTCTCGTCGATGGATCGAGTACATAGAG 898
| ||||||||||||||| |||||||||||||||| |||||| |||||||||| |||||||
Sbjct 824 CAGAAATGCTGAATTCGGTGTCAAGCGACAGATTTTCGTCGGTGGATCGAGTGCATAGAG 883
Query 899 GTAACTTGCGGGACAAGGAAGATATGGAAATGAAGAGAATGTTGAAGAAGAACAAAGACA 958
|||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||
Sbjct 884 GTAACTTGCGGGACAAGGAAGATATGGAAATGAAAAGAATGTTGATTAAGCACAAAGACT 943
Query 959 CATCCAGAAGAACGGTGTCTGAGATCATGACTGTTTCAAGAGAAAACGCGGTTGGAGGAA 1018
|||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||
Sbjct 944 CATCCAGAAGAACGGTTTCTGAGATCACGACTGTTTCAAGAGAAAAGGCGGTTGGAGGAA 1003
Query 1019 GCTACAGCGGTTCAACCGCTGCTACCGCATCCACGTCCCAGAATTATGCTATTACTGCGA 1078
||||||| ||||||||||| | | || | || | | |||||||||| |||||||||
Sbjct 1004 GCTACAGAGGTTCAACCGC-G-T-CCACTTC---G-C--AGAATTATGCCGTTACTGCGA 1054
Query 1079 CGACGGAGGAAAGAAGACGGCGGTTATGGTTGCCGATTGCTAGAAGAACGGCTCAGTGGT 1138
| ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1055 CCACGGAAGAAAGAAGACGGCGGTTATGGCTGCCGATCGCTAGAAGAACGGCTCAGTGGT 1114
Query 1139 TTGTTAACCGAGAGAAAAGGAATGAACTCAACACGACACGCCAAAATCTTAATGTATAG 1197
|||||||| |||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 1115 TTGTTAACAGAGAGAAAAGTAATGACCTAAACACGACACGCCAAAATCTTAATGTATAG 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5