BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480467
Length=2237
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20020.1 | Symbols: CAF1, ATCAF1 | RNA-binding CRS1 / YhbY (... 3452 0.0
> AT2G20020.1 | Symbols: CAF1, ATCAF1 | RNA-binding CRS1 / YhbY
(CRM) domain-containing protein | chr2:8644386-8647191 FORWARD
LENGTH=2285
Length=2285
Score = 3452 bits (1869), Expect = 0.0
Identities = 2119/2241 (95%), Gaps = 12/2241 (1%)
Strand=Plus/Plus
Query 1 CTGTGGATGAGTCTCTCTAAAACCTTGGCTTCCTCCGACTTCTTCTGTTTTCTCCGGCAA 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 20 CTGTGGATGAGTCTCTCTAAAACCTTGGCTTCCTTCGACTTCTTCTGTTTTCTCCGGCAA 79
Query 61 TGTCGTTGAAACTCAACACTCCTTTTCCAATTTTCGCGCCATCTCTATTTCCTAATCATA 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 TGTCGTTAAAACTCAACACTCCTTTTCCAATTTTCGCGCCATCTCTATTTCCTAATCATA 139
Query 121 ACCCAAGAGCGCCCAGCGAGATCCGATTCTCTAGATGGGGCAACGCTAATGCAGAACGGT 180
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 140 ACCCAAGAGCACCCAGCGAGATCCGATTCTCTAGATGGGGCAACGCTAATGCCGAACGGT 199
Query 181 TCGAGCAGCGTCGCCGGAGCCAAGAAGAGCTCGAGGCTGAGATCCGTCGCGACCGCCGAT 240
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 200 TCGAGCAGCGTCGCCGGAGCCAAGAAGAACTCGAGGCTGAGATCCGTCGGGACCGCCGAT 259
Query 241 TCGACGCCGCTACTAAAATCGTCCATACACACGATTCCGATGCCGCAGCTTCTGAGCCTA 300
|||||||||||||||||||||||||||| || |||||||| || |||||| |||||||||
Sbjct 260 TCGACGCCGCTACTAAAATCGTCCATACCCATGATTCCGAAGCAGCAGCTGCTGAGCCTA 319
Query 301 AAACGTCGCCGTTTAGATCAAGAGGCACTCCTTCACTTCCCTCTGCTCGTTCGATTCCGG 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 AAACGTCACCGTTTAGATCAAGAGGCACTCCTTCACTTCCCTCTGCTCGTTCGATTCCGG 379
Query 361 GTCGGAGATCCAAATACTCCAAACCCGATTCAGGACCCAATAAACCCAAGAACAAACCTA 420
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 380 GTCGAAGATCCAAATACTCCAAACCCGATTCAGGACCCAATAGACCCAAGAACAAACCTA 439
Query 421 GAGTACCCGATTCGCCGCCGCAATTAGATGCAAAGCCTGAGGTCAAGCTAAGTGAAGACG 480
||||||||||||||||||||||| |||| || ||||||||||| |||||||| ||||| |
Sbjct 440 GAGTACCCGATTCGCCGCCGCAACTAGACGCTAAGCCTGAGGTTAAGCTAAGCGAAGATG 499
Query 481 GATTATCTTACGTCATCAATGGAGCTCCTTTCGAATTCAAGTACAGTTACACGGAGACGC 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 GATTAACTTACGTCATCAATGGAGCTCCTTTCGAATTCAAGTACAGTTACACGGAGACGC 559
Query 541 CAAAGGTTAAGCCATTGAAGCTTCGTGAGCCTGCTTACGCGCCTTTTGGTCCTACGACGA 600
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 560 CAAAGGTTAAGCCTTTGAAGCTTCGTGAGCCTGCTTACGCGCCTTTTGGACCTACGACTA 619
Query 601 TGGGAAGGCCATGGACTGGTCGTGCTCCGCTTCCTCAGTCGCAGAAGACGCCGAGAGAAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TGGGAAGGCCATGGACTGGTCGTGCTCCGCTTCCTCAGTCGCAGAAGACGCCGAGAGAAT 679
Query 661 TCGATTCTTTTCGATTGCCTCCGGAAGGGAAGAAAGGTG-TGAAACCGGTGCAGAAACCG 719
|||||||||||||||||||||| | ||||||||||| | |||| |||||||||||||||
Sbjct 680 TCGATTCTTTTCGATTGCCTCCTGTGGGGAAGAAAGG-GCTGAAGCCGGTGCAGAAACCG 738
Query 720 GGTCCTTTTCGACCCGGGTTGGGTCCAAGGTATGTTTACACGAAGGAGGAGATTTTAGGA 779
|||||||||||||||||| | |||||||||||||||||| | ||||||||||||||||||
Sbjct 739 GGTCCTTTTCGACCCGGGGTAGGTCCAAGGTATGTTTACTCCAAGGAGGAGATTTTAGGA 798
Query 780 GAGCCATTGACTAAGGAAGAGATTAGAGAGCTGGTTACTTCTTGCCTAAAGACAACAAGG 839
||||||||||| ||||||||| | ||||||||||||||||||||| | ||||||||||||
Sbjct 799 GAGCCATTGACAAAGGAAGAGGTCAGAGAGCTGGTTACTTCTTGCTTGAAGACAACAAGG 858
Query 840 CAATTGAATATGGGCAGAGATGGCTTGACGCATAACATGTTGAACAACATACATGATCTA 899
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 859 CAATTGAATATGGGCAGAGATGGTTTGACGCATAACATGTTGAACAACATACATGATCTA 918
Query 900 TGGAAGCGGCGAAGGGTGTGTAAGATTAAATGCAAGGGAGTTTGTACAGTTGACATGGAT 959
||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||
Sbjct 919 TGGAAGCGGCGAAGGGTTTGTAAGATTAAATGCAAAGGAGTTTGTACAGTCGATATGGAT 978
Query 960 AATGTTTGCGAACAATTAGAGGAGAAAATTGGTGGGAAGGTGATATATAGAAGAGGAGGT 1019
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 AATGTTTGCGAGCAGTTAGAGGAGAAAATTGGTGGGAAGGTGATATATAGAAGAGGAGGT 1038
Query 1020 GTGCTTTTCCTATTTCGTGGGAGAAACTATAACCACAGGACAAGACCGCGGTTCCCTCTT 1079
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1039 GTGCTTTTCCTATTCCGTGGCAGAAACTATAACCACAGGACAAGACCGCGGTTCCCTCTT 1098
Query 1080 ATGTTGTGGAAGCCTGTAGCACCTGTTTATCCAAGGCTGATTCAACAAATGCCTGAGGGT 1139
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1099 ATGTTGTGGAAGCCTGTAGCACCTGTTTATCCAAGGCTAATTCAACAAGTGCCTGAGGGT 1158
Query 1140 TTAACTCTTCAGGAAGCTACCGAGATGCGGAGGAAAGGACGAGACCTCATGCCCATATGC 1199
||||||| ||||||||||||| | |||||||||||||||||||| ||||||||||| |||
Sbjct 1159 TTAACTCGTCAGGAAGCTACCAATATGCGGAGGAAAGGACGAGAGCTCATGCCCATTTGC 1218
Query 1200 AAGCTAGGGAAGAATGGTGTGTATTGTGACCTTGTGAAAAATGTTAAAGAAGCATTTGAA 1259
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1219 AAGCTAGGGAAGAATGGTGTGTATTGTGATCTTGTGAAAAATGTTAAAGAAGCATTTGAA 1278
Query 1260 GTTTGTGAATTGGTTCGGATCGATTGTCAAGGGATGAAAGGCAGTGATTTTAGGAAAATC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 GTTTGTGAATTGGTTCGGATCGATTGTCAAGGGATGAAAGGCAGTGATTTTAGGAAAATC 1338
Query 1320 GGTGCTAAACTCAAGGATCTTGTTCCATGTGTGCTCATATCTTTTGAAAACGAGCAAATT 1379
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1339 GGTGCCAAACTCAAGGATCTTGTTCCATGTGTGCTCGTATCTTTTGAAAACGAGCAGATT 1398
Query 1380 CTTATCTGGAGAGGACGGGAATGGAAATCGTCTCTCACAACTCCAGATAAAAAGGATGAT 1439
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1399 CTTATCTGGAGAGGACGAGAATGGAAATCGTCTCTCACAACTCCAGATAAAAAGGGTGAT 1458
Query 1440 ATCCTTGAAGATATCGAAGTTGATACTGCCTTGCCGGAAGATGATGAACCATCGGTGTCA 1499
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1459 ATCCTTGAAGATATCGAAGTTGATACTGCCTTGCCAGAAGATGACGAACCATCGGTGTCA 1518
Query 1500 CCAAATCAGACTCAAACTGTGACCCAGAGCCCTCCTCTGGATTCTATGGAATTGCAAAAT 1559
|||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1519 CCAAATCAGAGTCAAACTATGACCCAGAACCCTCCTCTGGATTCTATGGAACTGCAAAAT 1578
Query 1560 GATCCAGATGGTCCCGATTTGAGCTCTTCAACTGTAGATTTCTCGGCAATGGAGGGCACA 1619
||||||||||||| |||||||||| ||||||||||||||| ||||| |||||| ||||||
Sbjct 1579 GATCCAGATGGTCACGATTTGAGCCCTTCAACTGTAGATTCCTCGGAAATGGAAGGCACA 1638
Query 1620 AGCAATTCTTTAAAGAGCCCGTCTACAAAAGATCTAACTGAGCCAACGGCAGATAGTTCT 1679
| |||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||| |
Sbjct 1639 ATCAATTCTTTACAGAGCTGGTCTACAAAAGATGTAACTGAGCCAACGGTAGATAGTTTT 1698
Query 1680 ATTCGAGACCATGAAGAACCTGAACACGAACCAGAAACATCTGAAGAAATCAGCAAACAA 1739
||||||||| ||||||||||||| |||||||||||||||| ||||| ||||||||||||
Sbjct 1699 CTTCGAGACCTTGAAGAACCTGAAGACGAACCAGAAACATCGGAAGAGATCAGCAAACAA 1758
Query 1740 AGCATAGAGAGAGTTCTGAATCTGATGAAACAAGCTGTGGAGAGCGGGACTGCGCTTGTG 1799
||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct 1759 AGCATAGAGAGAGTTCTGATTTTGATGAAACAAGCTGTGGAGAGCGGGACTGCACTTGTG 1818
Query 1800 TTAGATGCTACTGATCTGGACGCAGACACAGTCTTCGCAAAAGCTGTCGCCTTTTCGACT 1859
||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| |
Sbjct 1819 TTAGATGCTGCTGATCTGGACGCAGACACAGTCTTTTCAAAAGCTGTTGCCTTTTCGAGT 1878
Query 1860 GTAGCTTCACCGGGACCAGTTTTCCAGCATGGCCTGAGAAAACAACCAACGGTTAAGAAG 1919
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1879 GTAGCTTCACCAGGACCAGTTTTCCAGCATGGCTTGAGAAAACAACCAACGGTTAAGAAG 1938
Query 1920 CAGGAAAGTCGAGAATTCGGGTACCGAAACTTGGAGGCAAAATCAAGTAATGTAGTGGTT 1979
|||||||| | ||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1939 CAGGAAAGCCAAGAATTCGGGTACGGAGACTTGGAGGCAAAATCAAGTAATGTAGTGGTT 1998
Query 1980 TCTAGGAATGCCTCCAAATCAAGTAATGTTGTGGTTTCTGGGAAAAGAGAAGTTGCAGTG 2039
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1999 TCTAGGAATGCTTCCAAATCAAGTAATGTTGTGGTTTTTGGGAAAAGAGAAGTTGCAGAG 2058
Query 2040 AGTGGGGAAAGAGAGGAG--G-AGGAGGGATTGAAGAAGAAAATGGACGAGTTTGCTGAA 2096
|| ||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||
Sbjct 2059 AGGGGGGAAAGAGAGGAGAAGGAGGAGGGATCGAAGAAGAAAATGGACGAGTTTGCTGAA 2118
Query 2097 GATTATAAAGAAGTAATACCACATGGAACATTGAAGCTAGATGAACTAGCTAAACTACTT 2156
||||| | |||||| || || ||||||||||||||| |||||||||||||||||||||||
Sbjct 2119 GATTACAGAGAAGTGATGCCGCATGGAACATTGAAGGTAGATGAACTAGCTAAACTACTT 2178
Query 2157 GCATAATGAGATTATCTGTATGTTATCTGTATTTGTTGAGTAGTGTATAATGTAGTCTAA 2216
||||||||| ||| | ||| || || ||||||||||| ||||||||||||||||||||
Sbjct 2179 GCATAATGAAATT-T-TGT--GT-AT--GTATTTGTTGACTAGTGTATAATGTAGTCTAA 2231
Query 2217 TCATCATTATCAAAAGTGTAA 2237
|||||||| ||||||||||||
Sbjct 2232 TCATCATTGTCAAAAGTGTAA 2252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110993404995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5