BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480471
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19990.1 | Symbols: PR-1-LIKE | pathogenesis-related protein... 985 0.0
> AT2G19990.1 | Symbols: PR-1-LIKE | pathogenesis-related protein-1-like
| chr2:8629984-8630688 REVERSE LENGTH=705
Length=705
Score = 985 bits (533), Expect = 0.0
Identities = 599/631 (95%), Gaps = 3/631 (0%)
Strand=Plus/Plus
Query 1 CCACCAAAGAAACTTCTATAAATACGTTAGCCAAGAAAATGCTTTCTTTTACGACACAAT 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCACCAAAGCAACTTCTATAAATACGTTAGCCAAGAAAATGCTTTCTTTTACGACACAAT 60
Query 61 AAGTTCCAAAACAATTAACCACACAAATACAAAATGAATAAAATGTCCTTCTTTGGTTAT 120
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 61 AAGTTCCAAAACAATTAACCACACAAATACAAAATGAATGAAATGTCGTTCTTTGGTTAT 120
Query 121 AGTTTCATCGTAGTCGCATTATTCTCCGATTTAACTCAAGCCTATCGTCACACTCCCGCT 180
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 AGTTTCATCGTAGTAGCATTATTCTTCGATTTAACTCAAGCCTATCGTCACACTCCCGCT 180
Query 181 CAACCGCCAAAAGCAAACGCAAATGGTGATGTCAAACCGCAAGAAACGCTCGCGGTTCAT 240
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 181 CAACCGCCAAAAGCAAACGCAAACGGTGATGTCAAACCGCAAGAAACGCTCGTGGTTCAC 240
Query 241 AACAATGCCCGAGCCATGGTCGGAGTCGGACCAATGGTGTGGAACGAAACTCTTGCGACT 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AACAAGGCCCGAGCCATGGTCGGAGTCGGACCAATGGTGTGGAACGAAACTCTTGCGACC 300
Query 301 TATGCACAAAACTATGCACACGAAAGAGCCAGAGACTGTGCCATGAAGCATTCCTCGGGA 360
|||||||| | ||| ||||| ||| |||||||||||||||||||||||||||||| ||||
Sbjct 301 TATGCACAGAGCTACGCACATGAACGAGCCAGAGACTGTGCCATGAAGCATTCCTTGGGA 360
Query 361 CCATTCGGCGAAAATCTAGCCGCGGGTTGGGGAACAATGAGCGGTCCGGTTGCGACTGAG 420
||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 361 CCATTCGGCGAGAATCTAGCCGCGGGTTGGGGAACGATGAGCGGTCCGGTAGCAACTGAG 420
Query 421 TATTGGATGACGGAGAAGGAAAATTACGATTATGACAGTAACACGTGTGGCGGTGGTGAT 480
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 421 TATTGGATGACGGAGAAGGAAAATTACGATTATGATAGTAACACGTGTGG---TGGTGAT 477
Query 481 GGTGTGTGTGGACACTACACTCAGATCGTGTGGCGTGACTCGGTTCGAGTCGGTTGTGGC 540
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 478 GGTGTGTGTGGACACTACACTCAGATCGTGTGGCGTGACTCGGTTCGACTTGGTTGTGCC 537
Query 541 TCGGTGAGGTGTAAGAATGATGAGTATATTTGGGTGATTTGTAGCTATGATCCTCCGGGG 600
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCCGTGAGATGTAAGAATGATGAGTATATTTGGGTGATTTGTAGCTATGATCCTCCGGGG 597
Query 601 AATTACATAGGTCAACGTCCGTATTAATGAT 631
|||||||| ||||||||||| ||||| ||||
Sbjct 598 AATTACATCGGTCAACGTCCATATTAGTGAT 628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30441893082
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5