BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480472

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G72600.1 | Symbols:  | hydroxyproline-rich glycoprotein fami...   307    5e-83


> AT1G72600.1 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr1:27338125-27338891 FORWARD LENGTH=767
Length=767

 Score =  307 bits (166),  Expect = 5e-83
 Identities = 190/202 (94%), Gaps = 0/202 (0%)
 Strand=Plus/Plus

Query  246  TCACCACCGAAGaaaaaaaTGGCGACAGAGAAGACACCATAAACACCCACCACCGCCTCC  305
            ||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||
Sbjct  354  TCACCACCGAAGAAAGAAATGGAGACAGAGAAGACACCATAAACATCCACCACCGCCTCC  413

Query  306  TCGGAAGAAGCGGAAGGTTAACACGGGAAAGACGGTGGGGCTTTTCTTCGCCGGTGTAGC  365
            || |||||||| |||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct  414  TCCGAAGAAGCAGAAGGTGAACACAGGAAAGACGGTGGGGCTTTTCTTCGCCGGCGTAGC  473

Query  366  TGCAGCTTTGCAAGTAGTTGTAGCTGCTTTCTTGCTTTTCAAAAGAAGACAACTTCTCCT  425
            ||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||
Sbjct  474  TGCAGCTTTGCAAGTAGTTGTTGCTGCTTTCTTGATTTTCAAAAGAAGACAGCTTCTTCT  533

Query  426  TAAGATCAATGATAGACACTGA  447
            ||||||||||||||||||||||
Sbjct  534  TAAGATCAATGATAGACACTGA  555



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5