BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480473

Length=497
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G19980.1 | Symbols:  | CAP (Cysteine-rich secretory proteins...   774    0.0  


> AT2G19980.1 | Symbols:  | CAP (Cysteine-rich secretory proteins, 
Antigen 5, and Pathogenesis-related 1 protein) superfamily 
protein | chr2:8627699-8628220 REVERSE LENGTH=498
Length=498

 Score =  774 bits (419),  Expect = 0.0
 Identities = 471/497 (95%), Gaps = 0/497 (0%)
 Strand=Plus/Plus

Query  1    ATGTCTTTTTCTGGTTATAGCTTCGTGGTAATAACATTATCCTCCATCGTCTTAACTCAA  60
            ||||||||||| |||||||||||| | ||| |||||||||  ||||||||||||||||||
Sbjct  1    ATGTCTTTTTCAGGTTATAGCTTCATCGTACTAACATTATTGTCCATCGTCTTAACTCAA  60

Query  61   ATCTATGGTTTGAGAAACTTTAACCGAATGGACGATCTCCAACCGGAAGAAACACTAGCG  120
            |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct  61   ATCTATGGTTTGAGAAGCTTTAGCCGAATGGACGATCTCCAACCGGCAGAAACACTAGCG  120

Query  121  ATTCACAACCAGATTCGAGCCGCGGACGAAAAACTTGCTGCCCATGCACAGAGGTACGCT  180
             ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct  121  GTTCACAACCAGATTCGAGCTGCGGACCAAAAACTTGCTGCCCATGCACAGAGGTACGCT  180

Query  181  AACGTACGATCCCAAGACTGCGCCATGAAACATTCCACCGATGGAATGTACGGCGAGAAT  240
            |||||||| ||||||||||||||||||||| |||||||||| |||| |||||| ||||||
Sbjct  181  AACGTACGTTCCCAAGACTGCGCCATGAAATATTCCACCGACGGAACGTACGGAGAGAAT  240

Query  241  ATAGCCGCTGGGTGGGTCCAACCTATGGACACCATGAGCGGTCCGATCGCGACAAAATTT  300
            |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  241  ATAGCCGCCGGGTGGGTCCAACCTATGGACACCATGAGCGGTCCGATCGCAACAAAGTTT  300

Query  301  TGGTTGACGGAGAAGCCTTATTACAATTATGCCACCAACAGATGTAGTGAACCGTGTGGG  360
            ||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct  301  TGGTTTACGGAGAAGCCTTATTACAATTATGCCACCAACAAATGCAGTGAACCGTGTGGG  360

Query  361  CATTACACTCAGATTGTGGCTAATCAATCGACACACCTTGGTTGTGGTACGGTTAGGTGT  420
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  CATTATACTCAGATTGTGGCTAATCAATCGACACACCTTGGTTGTGGTACGGTTAGGTGT  420

Query  421  TTTAAGAATGAGTATGTTTGGGTTGTATGTAACTATGCTCCTAGGCCGATGGGTGATGCC  480
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct  421  TTTAAGAATGAGTATGTTTGGGTCGTATGTAACTATGCTCCTAGGCCGATGGGTGATGCT  480

Query  481  AATACTCGTCCGTACTG  497
            |||||||||||||||||
Sbjct  481  AATACTCGTCCGTACTG  497



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23710517384


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5