BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg480474

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G22880.1 | Symbols:  | VQ motif-containing protein | chr2:97...   460    3e-129


> AT2G22880.1 | Symbols:  | VQ motif-containing protein | chr2:9741119-9741463 
REVERSE LENGTH=345
Length=345

 Score =  460 bits (249),  Expect = 3e-129
 Identities = 318/351 (91%), Gaps = 6/351 (2%)
 Strand=Plus/Plus

Query  1    ATGGAAGCTACTTCTCAGCCATGTTTCTCTCAGAACTACCACTCCTCGCTTCATTCGACC  60
            |||||||||||||| || |||||||||||||   | ||  ||||||| ||||||||||||
Sbjct  1    ATGGAAGCTACTTCACAACCATGTTTCTCTC---A-TA--ACTCCTCACTTCATTCGACC  54

Query  61   CGAAAGCAACCGGCAAAGCCATGGAAAAAACCCGTATCGGGTTTGGCTCAGCGGATGCAT  120
            || ||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||
Sbjct  55   CGTAAGCAACCGGCAAAGCCATGGAAAAAACCCGTAACGGGCTTGCCTCAGAGGATGCAT  114

Query  121  CCTAAAGTTTACCGAGTCAAGCCTGTTAACTTTAAGGAGTTGGTTCAGAGGCTAACTGGT  180
            |||||||||||| ||||| ||||||||||||| |||||||| ||||||||||||||||||
Sbjct  115  CCTAAAGTTTACAGAGTCGAGCCTGTTAACTTCAAGGAGTTAGTTCAGAGGCTAACTGGT  174

Query  181  GCACATGACCATGAGCAAGAGGTGCATCAAGTTGAAGCTAAGCCAGTCAAGATTTCTGAT  240
            ||| | |||  |||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct  175  GCAGAAGACGTTGAGCAAGAGGTACATCAAGTTGAAGCTAAACCAGTCAAGATTTCTGAT  234

Query  241  GACACAACAACAGCTAAGGATAACCCGTTCGCGTTTGATCTTTCACCGTCATCATCTCGG  300
            || |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct  235  GATACAACAACAGCTAAGGATAATCCGTTCGCGTTTGATCTTTCACCTTCGTCATCTCGG  294

Query  301  TTTTGGGAAGCTTTCCCTCTTCTCAGTCCTGCAAATCTTTCAAGATGGTAG  351
            || ||||||||||||||||| || |||||||| ||||| ||||||||||||
Sbjct  295  TTCTGGGAAGCTTTCCCTCTGCTTAGTCCTGCTAATCTATCAAGATGGTAG  345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16437553923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5